Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004903

Physical Location & Seq

Genomic Coordinates Forward (+)

21427850 .. 21431366

Gene Structure 3517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G208100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGCATACTTATACACTCCATGGCTCTTGTTGACTCAAATCCTACTGCAAGTAGCAAAGTATGAGGCTAAAGTTCCAGCTATTATTGTGTTTGGAGACTCATCTGTGGACTCAGGAAACAACAACAGGATCTCTACGCCTCTGAAGAGCAATTTCAAGCCATATGGGCGTGACTTTGCTGGTGGCCAGCCCACAGGAAGGTTCTCGAATGGTCGAGTTCCTCCAGATTTCATCTCTGAGGCTTTTGGGCTCAAACCATCTGTTCCTGCCTACTTGGACCCCAAATATGGGATATCAGATTTTGCCACTGGTGTTTGCTTTGCTTCTGCTGGAACTGGCTATGACACTGCAACTTCTGATGTACTAAATGTGATACCTCTGTGGAAAGAAGTGGAGTACTATAAGGAGTACCAGAACAAATTGAGAGCCTATCTTGGCGAGGCCAAGGCAAAGAGAATTTTGACAGAGGCTTTATATTTGATAAGCTTAGGAACAAATGACTTCCTGGAAAACTACTACACAATACCCACCCGGCAAATGGAATTCACAGTCCAACAGTATGAGGATTTCCTTATTGGACTTTCTGAAAATTTCATCAGGGAAATCTACAGTCTTGGGGTCAGAAAAATATCTCTAACTGGGCTTCCTCCAATGGGGTGTCTGCCATTAGAGAGAGCCAGAAATTTCATGGCAAATCATGATTGTGTGCAGGAACATAACAATGTGGCTGTGGAATTTAATGGGAAGTTGAGCAATATGGTGGCAAAGCTGAATCAAGAACTTCCAGGCCTTAGAATTCTGTTTACAGACAAAATATATCAGCTGTTCTATCAAATCATTAAAAGGCCTTCCTCATATGGATTTGAGGTTACTGAGGTGGCATGCTGTGCTACTGGGACATTCGAAATGAGCTACCTCTGCAATGAGAATAACCCATATACATGCAAAGATGCAAATAAGTACGTATTCTGGGATGCCTTCCATCCTACGGACAAAACAAATAAGATTCTTGCAGCCTCTTTGATTGGCATTCTTCGAGAAACCTTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

351

Amino Acids

39.53

Weight (kDa)

6.36

Isoelectric Point (pI)

26.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004903)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g41871 FvH4_6g41871 FvH4_6g41873
malus_domestica	MD09G1116600.v1.1
prunus_persica	Prupe.3G208100_v2.0.a1 Prupe.3G208100_v2.0.a1
pyrus_communis	pycom09g04090
rosa_chinensis	RchiOBHm_Chr2g0157731 RchiOBHm_Chr2g0157741
rosa_laevigata	RLG00000021014 RLG00000021015
rosa_multiflora	Rmu_sc0001275.1_g000015 Rmu_sc0001275.1_g000016 Rmu_sc0016846.1_g000001 Rmu_sc0019633.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091990 Rroxscaffold_2G00092000
rosa_rugosa	Rorug02G0463200 Rorug02G0463300
rosa_samantha	Rh2AG527900 Rh2AG528000 Rh2AG528100 Rh2BG542300 Rh2BG542400 Rh2CG512300 Rh2CG512400 Rh2DG551200 Rh2DG551300
rosa_wichuraiana	Rw2G043680 Rw2G043690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	137
AcoI	YGGCCR	1 cut(s)	184
AcsI	RAATTY	6 cut(s)	456, 542, 589, 682, 734, 795
AcuI	CTGAAG	1 cut(s)	164
AfaI	GTAC	4 cut(s)	363, 398, 410, 962
AfiI	CCNNNNNNNGG	6 cut(s)	198, 287, 288, 538, 653, 988
AgsI	TTSAA	2 cut(s)	157, 1048
AjnI	CCWGG	2 cut(s)	504, 784
AluBI	AGCT	5 cut(s)	80, 486, 769, 823, 912
AluI	AGCT	5 cut(s)	80, 486, 769, 823, 912
Alw26I	GTCTC	1 cut(s)	90
AlwI	GGATC	1 cut(s)	137
AoxI	GGCC	4 cut(s)	184, 441, 787, 845
ApeKI	GCWGC	1 cut(s)	1013
ApoI	RAATTY	6 cut(s)	456, 542, 589, 682, 734, 795
AspS9I	GGNCC	1 cut(s)	277
AsuC2I	CCSGG	1 cut(s)	532
AsuII	TTCGAA	1 cut(s)	903
AvaII	GGWCC	1 cut(s)	277
BaeI	ACNNNNGTAYC	2 cut(s)	365, 398
BalI	TGGCCA	1 cut(s)	186
BanII	GRGCYC	1 cut(s)	252
BbvI	GCAGC	1 cut(s)	1025
BccI	CCATC	2 cut(s)	265, 990
BciT130I	CCWGG	2 cut(s)	506, 786
BcnI	CCSGG	1 cut(s)	532
BcoDI	GTCTC	1 cut(s)	90
BfmI	CTRYAG	1 cut(s)	607
BglI	GCCNNNNNGGC	1 cut(s)	166
BisI	GCNGC	1 cut(s)	1014
BlsI	GCNGC	1 cut(s)	1015
BmcAI	AGTACT	1 cut(s)	398
Bme1390I	CCNGG	3 cut(s)	506, 532, 786
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	3 cut(s)	506, 532, 786
BmrI	ACTGGG	2 cut(s)	648, 903
BmsI	GCATC	2 cut(s)	940, 964
BmuI	ACTGGG	2 cut(s)	648, 903
BpmI	CTGGAG	1 cut(s)	207
Bpu10I	CCTNAGC	1 cut(s)	487
Bpu14I	TTCGAA	1 cut(s)	903
BpuMI	CCSGG	1 cut(s)	532
BsaAI	YACGTR	1 cut(s)	964
BsaJI	CCNNGG	2 cut(s)	20, 444
Bsc4I	CCNNNNNNNGG	6 cut(s)	198, 287, 288, 538, 653, 988
Bse1I	ACTGG	4 cut(s)	313, 340, 643, 898
Bse3DI	GCAATG	1 cut(s)	928
BseBI	CCWGG	2 cut(s)	506, 786
BseDI	CCNNGG	2 cut(s)	20, 444
BseGI	GGATG	2 cut(s)	979, 982
BseLI	CCNNNNNNNGG	6 cut(s)	198, 287, 288, 538, 653, 988
BseMI	GCAATG	1 cut(s)	928
BseMII	CTCAG	3 cut(s)	126, 228, 864
BseNI	ACTGG	4 cut(s)	313, 340, 643, 898
BseXI	GCAGC	1 cut(s)	1025
BsgI	GTGCAG	1 cut(s)	728
BshFI	GGCC	4 cut(s)	186, 443, 789, 847
BsiSI	CCGG	1 cut(s)	532
BslFI	GGGAC	1 cut(s)	910
BslI	CCNNNNNNNGG	6 cut(s)	198, 287, 288, 538, 653, 988
BsmAI	GTCTC	1 cut(s)	90
BsmFI	GGGAC	1 cut(s)	910
BsmI	GAATGC	1 cut(s)	1029
BsnI	GGCC	4 cut(s)	186, 443, 789, 847
Bsp119I	TTCGAA	1 cut(s)	903
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	1 cut(s)	129
Bsp19I	CCATGG	1 cut(s)	20
BspANI	GGCC	4 cut(s)	186, 443, 789, 847
BspCNI	CTCAG	3 cut(s)	125, 229, 865
BspHI	TCATGA	1 cut(s)	697
BspLI	GGNNCC	1 cut(s)	279
BspPI	GGATC	1 cut(s)	137
BspQI	GCTCTTC	1 cut(s)	140
BspT104I	TTCGAA	1 cut(s)	903
BsrDI	GCAATG	1 cut(s)	928
BsrI	ACTGG	4 cut(s)	313, 340, 643, 898
BssECI	CCNNGG	2 cut(s)	20, 444
BssMI	GATC	1 cut(s)	129
BssT1I	CCWWGG	2 cut(s)	20, 444
Bst2UI	CCWGG	2 cut(s)	506, 786
Bst4CI	ACNGT	3 cut(s)	550, 558, 611
Bst6I	CTCTTC	1 cut(s)	140
BstAPI	GCANNNNNTGC	1 cut(s)	887
BstBAI	YACGTR	1 cut(s)	964
BstBI	TTCGAA	1 cut(s)	903
BstC8I	GCNNGC	2 cut(s)	188, 883
BstDEI	CTNAG	5 cut(s)	112, 237, 487, 791, 873
BstDSI	CCRYGG	1 cut(s)	20
BstF5I	GGATG	2 cut(s)	979, 982
BstKTI	GATC	1 cut(s)	132
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	1 cut(s)	129
BstMWI	GCNNNNNNNGC	3 cut(s)	166, 887, 918
BstNI	CCWGG	2 cut(s)	506, 786
BstNSI	RCATGY	2 cut(s)	885, 945
BstSCI	CCNGG	3 cut(s)	504, 530, 784
BstSFI	CTRYAG	1 cut(s)	607
BstSNI	TACGTA	1 cut(s)	964
BstV1I	GCAGC	1 cut(s)	1025
BstX2I	RGATCY	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	129
BsuRI	GGCC	4 cut(s)	186, 443, 789, 847
BtgI	CCRYGG	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	979, 982
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	2 cut(s)	306, 345
Cac8I	GCNNGC	2 cut(s)	188, 883
CciI	TCATGA	1 cut(s)	697
Cfr13I	GGNCC	1 cut(s)	277
Csp6I	GTAC	4 cut(s)	362, 397, 409, 961
CviAII	CATG	5 cut(s)	21, 688, 698, 882, 942
CviQI	GTAC	4 cut(s)	362, 397, 409, 961
DdeI	CTNAG	5 cut(s)	112, 237, 487, 791, 873
DpnI	GATC	1 cut(s)	131
DpnII	GATC	1 cut(s)	129
EaeI	YGGCCR	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
Eco105I	TACGTA	1 cut(s)	964
Eco130I	CCWWGG	2 cut(s)	20, 444
Eco147I	AGGCCT	2 cut(s)	789, 847
Eco24I	GRGCYC	1 cut(s)	252
Eco32I	GATATC	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	164
EcoRI	GAATTC	2 cut(s)	542, 795
EcoRII	CCWGG	2 cut(s)	504, 784
EcoRV	GATATC	1 cut(s)	294
EcoT14I	CCWWGG	2 cut(s)	20, 444
EcoT38I	GRGCYC	1 cut(s)	252
ErhI	CCWWGG	2 cut(s)	20, 444
FaeI	CATG	5 cut(s)	24, 691, 701, 885, 945
FaqI	GGGAC	1 cut(s)	910
FatI	CATG	5 cut(s)	20, 687, 697, 881, 941
FauNDI	CATATG	2 cut(s)	163, 856
Fnu4HI	GCNGC	1 cut(s)	1014
FokI	GGATG	2 cut(s)	969, 986
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	1 cut(s)	1014
GluI	GCNGC	1 cut(s)	1014
GsuI	CTGGAG	1 cut(s)	207
HaeIII	GGCC	4 cut(s)	186, 443, 789, 847
HapII	CCGG	1 cut(s)	532
Hin1II	CATG	5 cut(s)	24, 691, 701, 885, 945
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HindIII	AAGCTT	1 cut(s)	484
HinfI	GANTC	5 cut(s)	34, 98, 110, 772, 1006
HpaII	CCGG	1 cut(s)	532
Hpy166II	GTNNAC	3 cut(s)	33, 109, 804
Hpy188I	TCNGA	6 cut(s)	144, 238, 298, 358, 586, 623
Hpy188III	TCNNGA	6 cut(s)	114, 205, 224, 698, 776, 1037
Hpy8I	GTNNAC	3 cut(s)	33, 109, 804
HpyAV	CCTTC	3 cut(s)	192, 858, 988
HpyCH4III	ACNGT	3 cut(s)	550, 558, 611
HpyCH4IV	ACGT	1 cut(s)	963
HpyCH4V	TGCA	7 cut(s)	49, 350, 709, 921, 945, 953, 1013
HpyF10VI	GCNNNNNNNGC	3 cut(s)	166, 887, 918
HpyF3I	CTNAG	5 cut(s)	112, 237, 487, 791, 873
HpySE526I	ACGT	1 cut(s)	963
Hsp92II	CATG	5 cut(s)	24, 691, 701, 885, 945
Kzo9I	GATC	1 cut(s)	129
LguI	GCTCTTC	1 cut(s)	140
Lsp1109I	GCAGC	1 cut(s)	1025
LweI	GCATC	2 cut(s)	940, 964
MaeII	ACGT	1 cut(s)	963
MaeIII	GTNAC	2 cut(s)	170, 868
MalI	GATC	1 cut(s)	131
MboI	GATC	1 cut(s)	129
MboII	GAAGA	2 cut(s)	157, 1025
MflI	RGATCY	1 cut(s)	129
MhlI	GDGCHC	1 cut(s)	252
MlsI	TGGCCA	1 cut(s)	186
MluCI	AATT	8 cut(s)	151, 419, 456, 542, 589, 682, 734, 795
MluNI	TGGCCA	1 cut(s)	186
MlyI	GAGTC	3 cut(s)	28, 92, 104
MmeI	TCCRAC	1 cut(s)	577
Mox20I	TGGCCA	1 cut(s)	186
MscI	TGGCCA	1 cut(s)	186
MseI	TTAA	2 cut(s)	738, 840
MslI	CAYNNNNRTG	3 cut(s)	702, 720, 940
Msp20I	TGGCCA	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	823
MspI	CCGG	1 cut(s)	532
MspR9I	CCNGG	3 cut(s)	506, 532, 786
Mva1269I	GAATGC	1 cut(s)	1029
MvaI	CCWGG	2 cut(s)	506, 786
MwoI	GCNNNNNNNGC	3 cut(s)	166, 887, 918
NciI	CCSGG	1 cut(s)	532
NcoI	CCATGG	1 cut(s)	20
NdeI	CATATG	2 cut(s)	163, 856
NdeII	GATC	1 cut(s)	129
NlaIII	CATG	5 cut(s)	24, 691, 701, 885, 945
NlaIV	GGNNCC	1 cut(s)	279
NmuCI	GTSAC	1 cut(s)	170
NspI	RCATGY	2 cut(s)	885, 945
NspV	TTCGAA	1 cut(s)	903
PaeI	GCATGC	1 cut(s)	885
PagI	TCATGA	1 cut(s)	697
PceI	AGGCCT	2 cut(s)	789, 847
PciSI	GCTCTTC	1 cut(s)	140
PctI	GAATGC	1 cut(s)	1029
PfeI	GAWTC	2 cut(s)	772, 1006
PfoI	TCCNGGA	1 cut(s)	504
PkrI	GCNGC	1 cut(s)	1015
PleI	GAGTC	3 cut(s)	28, 92, 104
PpsI	GAGTC	3 cut(s)	28, 92, 104
Ppu21I	YACGTR	1 cut(s)	964
Psp6I	CCWGG	2 cut(s)	504, 784
PspGI	CCWGG	2 cut(s)	504, 784
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	1 cut(s)	277
PsuI	RGATCY	1 cut(s)	129
PvuII	CAGCTG	1 cut(s)	823
RsaI	GTAC	4 cut(s)	363, 398, 410, 962
RsaNI	GTAC	4 cut(s)	362, 397, 409, 961
RseI	CAYNNNNRTG	3 cut(s)	702, 720, 940
SapI	GCTCTTC	1 cut(s)	140
SaqAI	TTAA	2 cut(s)	738, 840
SatI	GCNGC	1 cut(s)	1014
Sau3AI	GATC	1 cut(s)	129
Sau96I	GGNCC	1 cut(s)	277
ScaI	AGTACT	1 cut(s)	398
SchI	GAGTC	3 cut(s)	28, 92, 104
ScrFI	CCNGG	3 cut(s)	506, 532, 786
SduI	GDGCHC	1 cut(s)	252
SfaNI	GCATC	2 cut(s)	940, 964
SfcI	CTRYAG	1 cut(s)	607
SfuI	TTCGAA	1 cut(s)	903
SinI	GGWCC	1 cut(s)	277
SmiMI	CAYNNNNRTG	3 cut(s)	702, 720, 940
SnaBI	TACGTA	1 cut(s)	964
SphI	GCATGC	1 cut(s)	885
Sse9I	AATT	8 cut(s)	151, 419, 456, 542, 589, 682, 734, 795
SseBI	AGGCCT	2 cut(s)	789, 847
StuI	AGGCCT	2 cut(s)	789, 847
StyD4I	CCNGG	3 cut(s)	504, 530, 784
StyI	CCWWGG	2 cut(s)	20, 444
TaaI	ACNGT	3 cut(s)	550, 558, 611
TaiI	ACGT	1 cut(s)	966
TaqI	TCGA	4 cut(s)	206, 214, 903, 1036
TasI	AATT	8 cut(s)	151, 419, 456, 542, 589, 682, 734, 795
TatI	WGTACW	2 cut(s)	361, 396
TfiI	GAWTC	2 cut(s)	772, 1006
Tru1I	TTAA	2 cut(s)	738, 840
Tru9I	TTAA	2 cut(s)	738, 840
TscAI	CASTG	2 cut(s)	313, 352
TseFI	GTSAC	1 cut(s)	170
TseI	GCWGC	1 cut(s)	1013
Tsp45I	GTSAC	1 cut(s)	170
TspDTI	ATGAA	3 cut(s)	220, 583, 676
TspGWI	ACGGA	1 cut(s)	1004
TspRI	CASTG	2 cut(s)	313, 352
VpaK11BI	GGWCC	1 cut(s)	277
XapI	RAATTY	6 cut(s)	456, 542, 589, 682, 734, 795
XceI	RCATGY	2 cut(s)	885, 945
XcmI	CCANNNNNNNNNTGG	2 cut(s)	535, 685
ZrmI	AGTACT	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.