Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016846.1

Orthogroup ID

OG0004903

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3338

Gene Structure 3338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016846.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 955 bp

atggcatgcatatacgttccatggctcttgttgactcaaattctactacaagtagcaaaacatgagaccaaggttccagccattattgtgtttggagactcgtctgtggattcaggaaacaacaaccagatttcgacacccttgaagagcaatttcaagccatatgggcgcgattttgctggcggtcaacccacaggaaggttctccaatggtcgtgttcctccggatctcatctctgaggctttcgggctgaaaccctctgttcctgcttacttggatcccaagtttgggatttcggattttgtcactggtgtttgctttgcttctgctggaaccggctatgacaatgctacttctgatgtactgaatgttatacctctgtggaaagaagtggagtactacaaggagtaccaaagcaaattgagagcctatgttggccatcacaaggcaagagaaattttgacagaggctttgtacttgataagcttgggaaccaatgacttccttgagaactactacacgattcctcgccggcgagcccaattcacagtccagcagtaccaggatttcctggtggaacttgctgaaaatttcctgagggaaatttacagtcttggagtcagaaaaatttccttaactggggcacctcctatggggtgcttgcccttagagagggccacaaatttcatgaataatcatgattgtgtggaggaatataacaacgtggctgtggaatttaatgggaagttgaacaacatggtagcaaaactaaatcaggagcttccaggctataaaattctatttacagcaaaagtatatcagttcttctatcaaatcattagaagcccttcttcatatggatttgatgttgctgaagtggcatgttgttctactgggacatttgagatgagttacctctgcaacgaggataatccatttacatgcacagatgcaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

318

Amino Acids

35.7

Weight (kDa)

5.35

Isoelectric Point (pI)

34.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004903)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g41871 FvH4_6g41871 FvH4_6g41873
malus_domestica	MD09G1116600.v1.1
prunus_persica	Prupe.3G208100_v2.0.a1 Prupe.3G208100_v2.0.a1
pyrus_communis	pycom09g04090
rosa_chinensis	RchiOBHm_Chr2g0157731 RchiOBHm_Chr2g0157741
rosa_laevigata	RLG00000021014 RLG00000021015
rosa_multiflora	Rmu_sc0001275.1_g000015 Rmu_sc0001275.1_g000016 Rmu_sc0016846.1_g000001 Rmu_sc0019633.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091990 Rroxscaffold_2G00092000
rosa_rugosa	Rorug02G0463200 Rorug02G0463300
rosa_samantha	Rh2AG527900 Rh2AG528000 Rh2AG528100 Rh2BG542300 Rh2BG542400 Rh2CG512300 Rh2CG512400 Rh2DG551200 Rh2DG551300
rosa_wichuraiana	Rw2G043680 Rw2G043690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	643
AccII	CGCG	1 cut(s)	171
AccIII	TCCGGA	1 cut(s)	223
AciI	CCGC	1 cut(s)	183
AclWI	GGATC	3 cut(s)	234, 272, 285
AcoI	YGGCCR	1 cut(s)	436
AcsI	RAATTY	8 cut(s)	39, 456, 589, 603, 627, 682, 734, 795
AcuI	CTGAAG	1 cut(s)	894
AfaI	GTAC	5 cut(s)	363, 398, 410, 476, 560
AfiI	CCNNNNNNNGG	7 cut(s)	198, 287, 288, 445, 639, 653, 672
AgsI	TTSAA	3 cut(s)	145, 157, 751
AjnI	CCWGG	3 cut(s)	561, 570, 784
AluBI	AGCT	2 cut(s)	486, 781
AluI	AGCT	2 cut(s)	486, 781
Alw26I	GTCTC	2 cut(s)	59, 90
AlwI	GGATC	3 cut(s)	234, 272, 285
Aor13HI	TCCGGA	1 cut(s)	223
AoxI	GGCC	2 cut(s)	436, 675
ApoI	RAATTY	8 cut(s)	39, 456, 589, 603, 627, 682, 734, 795
ArsI	GACNNNNNNTTYG	2 cut(s)	454, 486
Asp700I	GAANNNNTTC	2 cut(s)	628, 847
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	1 cut(s)	675
AxyI	CCTNAGG	1 cut(s)	596
BaeGI	GKGCMC	1 cut(s)	646
BalI	TGGCCA	1 cut(s)	438
BamHI	GGATCC	1 cut(s)	277
BanI	GGYRCC	1 cut(s)	643
BanII	GRGCYC	1 cut(s)	541
BccI	CCATC	1 cut(s)	447
BciT130I	CCWGG	3 cut(s)	563, 572, 786
BcoDI	GTCTC	2 cut(s)	59, 90
BglI	GCCNNNNNGGC	1 cut(s)	166
BmcAI	AGTACT	1 cut(s)	398
Bme1390I	CCNGG	3 cut(s)	563, 572, 786
BmgT120I	GGNCC	1 cut(s)	675
BmiI	GGNNCC	5 cut(s)	75, 279, 334, 493, 645
BmrFI	CCNGG	3 cut(s)	563, 572, 786
BmrI	ACTGGG	2 cut(s)	648, 903
BmsI	GCATC	1 cut(s)	940
BmuI	ACTGGG	2 cut(s)	648, 903
BpuEI	CTTGAG	1 cut(s)	527
BsaI	GGTCTC	1 cut(s)	59
BsaJI	CCNNGG	2 cut(s)	20, 69
BsaWI	WCCGGW	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	7 cut(s)	198, 287, 288, 445, 639, 653, 672
Bse118I	RCCGGY	2 cut(s)	335, 531
Bse1I	ACTGG	3 cut(s)	313, 643, 898
Bse21I	CCTNAGG	1 cut(s)	596
BseAI	TCCGGA	1 cut(s)	223
BseBI	CCWGG	3 cut(s)	563, 572, 786
BseDI	CCNNGG	2 cut(s)	20, 69
BseLI	CCNNNNNNNGG	7 cut(s)	198, 287, 288, 445, 639, 653, 672
BseMII	CTCAG	2 cut(s)	228, 587
BseNI	ACTGG	3 cut(s)	313, 643, 898
BseSI	GKGCMC	1 cut(s)	646
Bsh1236I	CGCG	1 cut(s)	171
BshFI	GGCC	2 cut(s)	438, 677
BshNI	GGYRCC	1 cut(s)	643
BsiSI	CCGG	3 cut(s)	224, 336, 532
BslFI	GGGAC	1 cut(s)	910
BslI	CCNNNNNNNGG	7 cut(s)	198, 287, 288, 445, 639, 653, 672
BsmAI	GTCTC	2 cut(s)	59, 90
BsmFI	GGGAC	1 cut(s)	910
BsnI	GGCC	2 cut(s)	438, 677
Bso31I	GGTCTC	1 cut(s)	59
Bsp1286I	GDGCHC	2 cut(s)	541, 646
Bsp13I	TCCGGA	1 cut(s)	223
Bsp143I	GATC	2 cut(s)	226, 277
Bsp19I	CCATGG	1 cut(s)	20
BspACI	CCGC	1 cut(s)	183
BspANI	GGCC	2 cut(s)	438, 677
BspCNI	CTCAG	2 cut(s)	229, 588
BspEI	TCCGGA	1 cut(s)	223
BspFNI	CGCG	1 cut(s)	171
BspHI	TCATGA	2 cut(s)	687, 697
BspLI	GGNNCC	5 cut(s)	75, 279, 334, 493, 645
BspPI	GGATC	3 cut(s)	234, 272, 285
BspQI	GCTCTTC	1 cut(s)	140
BspT107I	GGYRCC	1 cut(s)	643
BspTNI	GGTCTC	1 cut(s)	59
BsrFI	RCCGGY	2 cut(s)	335, 531
BsrI	ACTGG	3 cut(s)	313, 643, 898
BssAI	RCCGGY	2 cut(s)	335, 531
BssECI	CCNNGG	2 cut(s)	20, 69
BssMI	GATC	2 cut(s)	226, 277
BssT1I	CCWWGG	2 cut(s)	20, 69
Bst2UI	CCWGG	3 cut(s)	563, 572, 786
Bst4CI	ACNGT	2 cut(s)	550, 611
Bst6I	CTCTTC	1 cut(s)	140
BstC8I	GCNNGC	5 cut(s)	7, 181, 533, 537, 662
BstDEI	CTNAG	3 cut(s)	237, 596, 667
BstDSI	CCRYGG	1 cut(s)	20
BstENI	CCTNNNNNAGG	1 cut(s)	670
BstFNI	CGCG	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	2 cut(s)	229, 280
BstMAI	GTCTC	2 cut(s)	59, 90
BstMBI	GATC	2 cut(s)	226, 277
BstMWI	GCNNNNNNNGC	2 cut(s)	166, 878
BstNI	CCWGG	3 cut(s)	563, 572, 786
BstNSI	RCATGY	3 cut(s)	9, 885, 945
BstSCI	CCNGG	3 cut(s)	561, 570, 784
BstSLI	GKGCMC	1 cut(s)	646
BstUI	CGCG	1 cut(s)	171
BstX2I	RGATCY	2 cut(s)	226, 277
BstYI	RGATCY	2 cut(s)	226, 277
Bsu36I	CCTNAGG	1 cut(s)	596
BsuRI	GGCC	2 cut(s)	438, 677
BtgI	CCRYGG	1 cut(s)	20
BtsIMutI	CAGTG	1 cut(s)	306
Cac8I	GCNNGC	5 cut(s)	7, 181, 533, 537, 662
CciI	TCATGA	2 cut(s)	687, 697
CfoI	GCGC	1 cut(s)	171
Cfr10I	RCCGGY	2 cut(s)	335, 531
Cfr13I	GGNCC	1 cut(s)	675
Csp6I	GTAC	5 cut(s)	362, 397, 409, 475, 559
CviAII	CATG	8 cut(s)	6, 21, 62, 688, 698, 757, 882, 942
CviQI	GTAC	5 cut(s)	362, 397, 409, 475, 559
DdeI	CTNAG	3 cut(s)	237, 596, 667
DpnI	GATC	2 cut(s)	228, 279
DpnII	GATC	2 cut(s)	226, 277
EaeI	YGGCCR	1 cut(s)	436
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
Eco130I	CCWWGG	2 cut(s)	20, 69
Eco24I	GRGCYC	1 cut(s)	541
Eco31I	GGTCTC	1 cut(s)	59
Eco57I	CTGAAG	1 cut(s)	894
Eco81I	CCTNAGG	1 cut(s)	596
EcoNI	CCTNNNNNAGG	1 cut(s)	670
EcoRII	CCWGG	3 cut(s)	561, 570, 784
EcoT14I	CCWWGG	2 cut(s)	20, 69
EcoT22I	ATGCAT	1 cut(s)	11
EcoT38I	GRGCYC	1 cut(s)	541
ErhI	CCWWGG	2 cut(s)	20, 69
FaeI	CATG	8 cut(s)	9, 24, 65, 691, 701, 760, 885, 945
FalI	AAGNNNNNCTT	2 cut(s)	835, 867
FaqI	GGGAC	1 cut(s)	910
FatI	CATG	8 cut(s)	5, 20, 61, 687, 697, 756, 881, 941
FauNDI	CATATG	2 cut(s)	163, 856
FriOI	GRGCYC	1 cut(s)	541
GlaI	GCGC	1 cut(s)	170
HaeIII	GGCC	2 cut(s)	438, 677
HapII	CCGG	3 cut(s)	224, 336, 532
HhaI	GCGC	1 cut(s)	171
Hin1II	CATG	8 cut(s)	9, 24, 65, 691, 701, 760, 885, 945
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HincII	GTYRAC	2 cut(s)	33, 188
HindII	GTYRAC	2 cut(s)	33, 188
HindIII	AAGCTT	1 cut(s)	484
HinfI	GANTC	5 cut(s)	34, 98, 110, 523, 618
HpaII	CCGG	3 cut(s)	224, 336, 532
Hpy166II	GTNNAC	2 cut(s)	33, 188
Hpy188I	TCNGA	4 cut(s)	238, 298, 358, 623
Hpy188III	TCNNGA	6 cut(s)	114, 224, 595, 688, 698, 776
Hpy8I	GTNNAC	2 cut(s)	33, 188
HpyAV	CCTTC	2 cut(s)	192, 858
HpyCH4III	ACNGT	2 cut(s)	550, 611
HpyCH4IV	ACGT	2 cut(s)	15, 723
HpyCH4V	TGCA	4 cut(s)	9, 921, 945, 953
HpyF10VI	GCNNNNNNNGC	2 cut(s)	166, 878
HpyF3I	CTNAG	3 cut(s)	237, 596, 667
HpySE526I	ACGT	2 cut(s)	15, 723
Hsp92II	CATG	8 cut(s)	9, 24, 65, 691, 701, 760, 885, 945
HspAI	GCGC	1 cut(s)	169
Kpn2I	TCCGGA	1 cut(s)	223
KroI	GCCGGC	1 cut(s)	531
KroNI	GCCGGC	1 cut(s)	533
Kzo9I	GATC	2 cut(s)	226, 277
LguI	GCTCTTC	1 cut(s)	140
LmnI	GCTCC	1 cut(s)	778
LweI	GCATC	1 cut(s)	940
MaeII	ACGT	2 cut(s)	15, 723
MaeIII	GTNAC	2 cut(s)	304, 911
MalI	GATC	2 cut(s)	228, 279
MboI	GATC	2 cut(s)	226, 277
MboII	GAAGA	3 cut(s)	157, 817, 843
MflI	RGATCY	2 cut(s)	226, 277
MhlI	GDGCHC	2 cut(s)	541, 646
MlsI	TGGCCA	1 cut(s)	438
MluNI	TGGCCA	1 cut(s)	438
MlyI	GAGTC	3 cut(s)	28, 92, 627
Mox20I	TGGCCA	1 cut(s)	438
Mph1103I	ATGCAT	1 cut(s)	11
MreI	CGCCGGCG	1 cut(s)	531
MroI	TCCGGA	1 cut(s)	223
MroNI	GCCGGC	1 cut(s)	531
MroXI	GAANNNNTTC	2 cut(s)	628, 847
MscI	TGGCCA	1 cut(s)	438
MseI	TTAA	2 cut(s)	635, 738
MslI	CAYNNNNRTG	3 cut(s)	86, 702, 940
Msp20I	TGGCCA	1 cut(s)	438
MspI	CCGG	3 cut(s)	224, 336, 532
MspR9I	CCNGG	3 cut(s)	563, 572, 786
MvaI	CCWGG	3 cut(s)	563, 572, 786
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	2 cut(s)	166, 878
NaeI	GCCGGC	1 cut(s)	533
NcoI	CCATGG	1 cut(s)	20
NdeI	CATATG	2 cut(s)	163, 856
NdeII	GATC	2 cut(s)	226, 277
NgoMIV	GCCGGC	1 cut(s)	531
NlaIII	CATG	8 cut(s)	9, 24, 65, 691, 701, 760, 885, 945
NlaIV	GGNNCC	5 cut(s)	75, 279, 334, 493, 645
NmuCI	GTSAC	1 cut(s)	304
NsiI	ATGCAT	1 cut(s)	11
NspI	RCATGY	3 cut(s)	9, 885, 945
PaeI	GCATGC	1 cut(s)	9
PagI	TCATGA	2 cut(s)	687, 697
PciSI	GCTCTTC	1 cut(s)	140
PdiI	GCCGGC	1 cut(s)	533
PdmI	GAANNNNTTC	2 cut(s)	628, 847
PfeI	GAWTC	2 cut(s)	110, 523
PleI	GAGTC	3 cut(s)	28, 92, 626
PpsI	GAGTC	3 cut(s)	28, 92, 626
Psp6I	CCWGG	3 cut(s)	561, 570, 784
PspGI	CCWGG	3 cut(s)	561, 570, 784
PspN4I	GGNNCC	5 cut(s)	75, 279, 334, 493, 645
PspPI	GGNCC	1 cut(s)	675
PsuI	RGATCY	2 cut(s)	226, 277
RsaI	GTAC	5 cut(s)	363, 398, 410, 476, 560
RsaNI	GTAC	5 cut(s)	362, 397, 409, 475, 559
RseI	CAYNNNNRTG	3 cut(s)	86, 702, 940
SapI	GCTCTTC	1 cut(s)	140
SaqAI	TTAA	2 cut(s)	635, 738
Sau3AI	GATC	2 cut(s)	226, 277
Sau96I	GGNCC	1 cut(s)	675
ScaI	AGTACT	1 cut(s)	398
SchI	GAGTC	3 cut(s)	28, 92, 627
ScrFI	CCNGG	3 cut(s)	563, 572, 786
SduI	GDGCHC	2 cut(s)	541, 646
SetI	ASST	9 cut(s)	18, 75, 203, 379, 488, 649, 726, 783, 918
SfaNI	GCATC	1 cut(s)	940
SgrAI	CRCCGGYG	1 cut(s)	531
SmiMI	CAYNNNNRTG	3 cut(s)	86, 702, 940
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
SphI	GCATGC	1 cut(s)	9
SsiI	CCGC	1 cut(s)	183
StyD4I	CCNGG	3 cut(s)	561, 570, 784
StyI	CCWWGG	2 cut(s)	20, 69
TaaI	ACNGT	2 cut(s)	550, 611
TaiI	ACGT	2 cut(s)	18, 726
TaqI	TCGA	1 cut(s)	134
TatI	WGTACW	3 cut(s)	361, 396, 474
TfiI	GAWTC	2 cut(s)	110, 523
Tru1I	TTAA	2 cut(s)	635, 738
Tru9I	TTAA	2 cut(s)	635, 738
TscAI	CASTG	1 cut(s)	313
TseFI	GTSAC	1 cut(s)	304
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	3 cut(s)	676, 704, 843
TspRI	CASTG	1 cut(s)	313
XagI	CCTNNNNNAGG	1 cut(s)	670
XapI	RAATTY	8 cut(s)	39, 456, 589, 603, 627, 682, 734, 795
XceI	RCATGY	3 cut(s)	9, 885, 945
XmnI	GAANNNNTTC	2 cut(s)	628, 847
ZrmI	AGTACT	1 cut(s)	398
Zsp2I	ATGCAT	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.