Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001275.1

Orthogroup ID

OG0004903

Physical Location & Seq

Genomic Coordinates Forward (+)

69928 .. 73707

Gene Structure 3780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001275.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

atggcatacatatacattccatggctcttgttctctcaaatcctcctacaagtagcaaaacatgaggccaaggttccggctctcattgtcttcggagactccaccgtggattccggaaacaataaccggattaaaacacttttgaagagcaacttcaagccctatggccgcgactttgctgggggtcaacccacaggaaggttctccaatggtcgtgttcctccggatttcatttctgaggcttttggactgaaaccattcattccggcttacttggatcccaactatgggatttcggattttgttactggtgtttgctttgcttctgctggaactggctatgacaatgcgacttctgatgtactgaatgtgatccctctatggaaagaagtggagtactacaaggagtaccaggccaaattgagagaccatgttggccatcacaaggcaagagaaattttgacagaagctttgtatgtgataagcttgggaaccaatgatttcctcgagaactactacttgctacccagccggcaagtccaatatacagtccagcagtaccaggacttccttgttggactagccgaaaacttcatgagggagctttacagtcttggagccaggaagatttccctaactgggctccctcccatggggtgcttgcccttagagagagccataaatttcatgggtcaccatgattgtgtggaggagtacaacaatgtggccgtggagtttaatgtgaagttgaacaacatggtggcaaagcttaaccaagagcttccaggctatagagttctgtttacagagaaggtctatcagtttgtctatcaaatgatcagaacaccttcccaatttgggtttgatgttgctgaagtggcatgttgttctactgggagattcgagatgagttacctctgtagcgaaccaaatccatatacatgcaaagatgcaaataagtatatgttctgggatgcctttcatcctacagaaaaaacaaatcagttagtctccaactatttaattccagatcttctacaattctacaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

350

Amino Acids

39.97

Weight (kDa)

5.69

Isoelectric Point (pI)

24.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004903)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g41871 FvH4_6g41871 FvH4_6g41873
malus_domestica	MD09G1116600.v1.1
prunus_persica	Prupe.3G208100_v2.0.a1 Prupe.3G208100_v2.0.a1
pyrus_communis	pycom09g04090
rosa_chinensis	RchiOBHm_Chr2g0157731 RchiOBHm_Chr2g0157741
rosa_laevigata	RLG00000021014 RLG00000021015
rosa_multiflora	Rmu_sc0001275.1_g000015 Rmu_sc0001275.1_g000016 Rmu_sc0016846.1_g000001 Rmu_sc0019633.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091990 Rroxscaffold_2G00092000
rosa_rugosa	Rorug02G0463200 Rorug02G0463300
rosa_samantha	Rh2AG527900 Rh2AG528000 Rh2AG528100 Rh2BG542300 Rh2BG542400 Rh2CG512300 Rh2CG512400 Rh2DG551200 Rh2DG551300
rosa_wichuraiana	Rw2G043680 Rw2G043690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	171
AccIII	TCCGGA	2 cut(s)	113, 223
AciI	CCGC	1 cut(s)	169
AclWI	GGATC	3 cut(s)	272, 285, 367
AcoI	YGGCCR	3 cut(s)	166, 436, 726
AcsI	RAATTY	2 cut(s)	456, 682
AcuI	CTGAAG	1 cut(s)	894
AfaI	GTAC	5 cut(s)	363, 398, 410, 560, 716
AfiI	CCNNNNNNNGG	8 cut(s)	198, 287, 288, 445, 639, 652, 653, 858
AgsI	TTSAA	3 cut(s)	145, 157, 751
AjnI	CCWGG	4 cut(s)	411, 561, 620, 784
AluBI	AGCT	5 cut(s)	470, 486, 604, 769, 781
AluI	AGCT	5 cut(s)	470, 486, 604, 769, 781
Alw26I	GTCTC	3 cut(s)	90, 420, 1015
AlwI	GGATC	3 cut(s)	272, 285, 367
Ama87I	CYCGRG	1 cut(s)	506
Aor13HI	TCCGGA	2 cut(s)	113, 223
AoxI	GGCC	5 cut(s)	66, 166, 414, 436, 726
ApoI	RAATTY	2 cut(s)	456, 682
ArsI	GACNNNNNNTTYG	2 cut(s)	454, 486
Asp700I	GAANNNNTTC	2 cut(s)	257, 847
AsuHPI	GGTGA	1 cut(s)	686
AvaI	CYCGRG	1 cut(s)	506
BalI	TGGCCA	1 cut(s)	438
BamHI	GGATCC	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	645
BarI	GAAGNNNNNNTAC	2 cut(s)	551, 583
BbsI	GAAGAC	1 cut(s)	82
BccI	CCATC	1 cut(s)	447
BceAI	ACGGC	1 cut(s)	713
BciT130I	CCWGG	4 cut(s)	413, 563, 622, 786
BclI	TGATCA	1 cut(s)	837
BcoDI	GTCTC	3 cut(s)	90, 420, 1015
BfaI	CTAG	1 cut(s)	581
BfmI	CTRYAG	3 cut(s)	790, 919, 987
BglII	AGATCT	1 cut(s)	1030
BisI	GCNGC	1 cut(s)	169
BlsI	GCNGC	1 cut(s)	170
BmcAI	AGTACT	1 cut(s)	398
Bme1390I	CCNGG	4 cut(s)	413, 563, 622, 786
BmeT110I	CYCGRG	1 cut(s)	506
BmiI	GGNNCC	5 cut(s)	75, 279, 493, 619, 644
BmrFI	CCNGG	4 cut(s)	413, 563, 622, 786
BmrI	ACTGGG	2 cut(s)	648, 903
BmsI	GCATC	2 cut(s)	940, 964
BmuI	ACTGGG	2 cut(s)	648, 903
BpiI	GAAGAC	1 cut(s)	82
BsaI	GGTCTC	1 cut(s)	420
BsaJI	CCNNGG	5 cut(s)	20, 69, 105, 651, 729
BsaWI	WCCGGW	3 cut(s)	113, 126, 223
Bsc4I	CCNNNNNNNGG	8 cut(s)	198, 287, 288, 445, 639, 652, 653, 858
Bse118I	RCCGGY	1 cut(s)	531
Bse1I	ACTGG	4 cut(s)	313, 340, 643, 898
BseAI	TCCGGA	2 cut(s)	113, 223
BseBI	CCWGG	4 cut(s)	413, 563, 622, 786
BseDI	CCNNGG	5 cut(s)	20, 69, 105, 651, 729
BseGI	GGATG	2 cut(s)	979, 982
BseLI	CCNNNNNNNGG	8 cut(s)	198, 287, 288, 445, 639, 652, 653, 858
BseMII	CTCAG	1 cut(s)	228
BseNI	ACTGG	4 cut(s)	313, 340, 643, 898
BseRI	GAGGAG	1 cut(s)	725
BseYI	CCCAGC	2 cut(s)	179, 527
Bsh1236I	CGCG	1 cut(s)	171
BshFI	GGCC	5 cut(s)	68, 168, 416, 438, 728
BsiHKCI	CYCGRG	1 cut(s)	506
BsiSI	CCGG	6 cut(s)	77, 114, 127, 224, 266, 532
BslI	CCNNNNNNNGG	8 cut(s)	198, 287, 288, 445, 639, 652, 653, 858
BsmAI	GTCTC	3 cut(s)	90, 420, 1015
BsnI	GGCC	5 cut(s)	68, 168, 416, 438, 728
Bso31I	GGTCTC	1 cut(s)	420
BsoBI	CYCGRG	1 cut(s)	506
Bsp1286I	GDGCHC	1 cut(s)	645
Bsp13I	TCCGGA	2 cut(s)	113, 223
Bsp143I	GATC	4 cut(s)	277, 372, 837, 1030
Bsp19I	CCATGG	2 cut(s)	20, 651
BspACI	CCGC	1 cut(s)	169
BspANI	GGCC	5 cut(s)	68, 168, 416, 438, 728
BspCNI	CTCAG	1 cut(s)	229
BspEI	TCCGGA	2 cut(s)	113, 223
BspFNI	CGCG	1 cut(s)	171
BspHI	TCATGA	1 cut(s)	594
BspLI	GGNNCC	5 cut(s)	75, 279, 493, 619, 644
BspPI	GGATC	3 cut(s)	272, 285, 367
BspQI	GCTCTTC	1 cut(s)	140
BspTNI	GGTCTC	1 cut(s)	420
BsrFI	RCCGGY	1 cut(s)	531
BsrI	ACTGG	4 cut(s)	313, 340, 643, 898
BssAI	RCCGGY	1 cut(s)	531
BssECI	CCNNGG	5 cut(s)	20, 69, 105, 651, 729
BssMI	GATC	4 cut(s)	277, 372, 837, 1030
BssT1I	CCWWGG	3 cut(s)	20, 69, 651
Bst2UI	CCWGG	4 cut(s)	413, 563, 622, 786
Bst4CI	ACNGT	3 cut(s)	106, 550, 611
Bst6I	CTCTTC	1 cut(s)	140
BstC8I	GCNNGC	2 cut(s)	533, 662
BstDEI	CTNAG	2 cut(s)	237, 667
BstDSI	CCRYGG	4 cut(s)	20, 105, 651, 729
BstEII	GGTNACC	1 cut(s)	692
BstF5I	GGATG	2 cut(s)	979, 982
BstFNI	CGCG	1 cut(s)	171
BstKTI	GATC	4 cut(s)	280, 375, 840, 1033
BstMAI	GTCTC	3 cut(s)	90, 420, 1015
BstMBI	GATC	4 cut(s)	277, 372, 837, 1030
BstMWI	GCNNNNNNNGC	1 cut(s)	878
BstNI	CCWGG	4 cut(s)	413, 563, 622, 786
BstNSI	RCATGY	2 cut(s)	885, 945
BstPI	GGTNACC	1 cut(s)	692
BstSCI	CCNGG	4 cut(s)	411, 561, 620, 784
BstSFI	CTRYAG	3 cut(s)	790, 919, 987
BstUI	CGCG	1 cut(s)	171
BstV2I	GAAGAC	1 cut(s)	82
BstX2I	RGATCY	2 cut(s)	277, 1030
BstYI	RGATCY	2 cut(s)	277, 1030
BsuRI	GGCC	5 cut(s)	68, 168, 416, 438, 728
BtgI	CCRYGG	4 cut(s)	20, 105, 651, 729
BtsCI	GGATG	2 cut(s)	979, 982
Cac8I	GCNNGC	2 cut(s)	533, 662
CciI	TCATGA	1 cut(s)	594
Cfr10I	RCCGGY	1 cut(s)	531
Csp6I	GTAC	5 cut(s)	362, 397, 409, 559, 715
CviQI	GTAC	5 cut(s)	362, 397, 409, 559, 715
DdeI	CTNAG	2 cut(s)	237, 667
DpnI	GATC	4 cut(s)	279, 374, 839, 1032
DpnII	GATC	4 cut(s)	277, 372, 837, 1030
EaeI	YGGCCR	3 cut(s)	166, 436, 726
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
Eco130I	CCWWGG	3 cut(s)	20, 69, 651
Eco24I	GRGCYC	1 cut(s)	645
Eco31I	GGTCTC	1 cut(s)	420
Eco57I	CTGAAG	1 cut(s)	894
Eco88I	CYCGRG	1 cut(s)	506
Eco91I	GGTNACC	1 cut(s)	692
EcoO65I	GGTNACC	1 cut(s)	692
EcoRII	CCWGG	4 cut(s)	411, 561, 620, 784
EcoT14I	CCWWGG	3 cut(s)	20, 69, 651
EcoT38I	GRGCYC	1 cut(s)	645
ErhI	CCWWGG	3 cut(s)	20, 69, 651
FalI	AAGNNNNNCTT	2 cut(s)	137, 169
FbaI	TGATCA	1 cut(s)	837
Fnu4HI	GCNGC	1 cut(s)	169
FokI	GGATG	2 cut(s)	969, 986
FriOI	GRGCYC	1 cut(s)	645
Fsp4HI	GCNGC	1 cut(s)	169
FspBI	CTAG	1 cut(s)	581
GluI	GCNGC	1 cut(s)	169
GsaI	CCCAGC	2 cut(s)	183, 531
HaeIII	GGCC	5 cut(s)	68, 168, 416, 438, 728
HapII	CCGG	6 cut(s)	77, 114, 127, 224, 266, 532
HincII	GTYRAC	1 cut(s)	188
HindII	GTYRAC	1 cut(s)	188
HindIII	AAGCTT	3 cut(s)	468, 484, 767
HinfI	GANTC	3 cut(s)	98, 110, 900
HpaII	CCGG	6 cut(s)	77, 114, 127, 224, 266, 532
HphI	GGTGA	1 cut(s)	686
Hpy166II	GTNNAC	2 cut(s)	188, 804
Hpy188I	TCNGA	5 cut(s)	95, 238, 298, 358, 842
Hpy188III	TCNNGA	6 cut(s)	114, 224, 508, 595, 904, 1028
Hpy8I	GTNNAC	2 cut(s)	188, 804
HpyAV	CCTTC	3 cut(s)	192, 805, 858
HpyCH4III	ACNGT	3 cut(s)	106, 550, 611
HpyCH4V	TGCA	2 cut(s)	945, 953
HpyF10VI	GCNNNNNNNGC	1 cut(s)	878
HpyF3I	CTNAG	2 cut(s)	237, 667
Kpn2I	TCCGGA	2 cut(s)	113, 223
KroI	GCCGGC	1 cut(s)	531
KroNI	GCCGGC	1 cut(s)	533
Ksp22I	TGATCA	1 cut(s)	837
Kzo9I	GATC	4 cut(s)	277, 372, 837, 1030
LguI	GCTCTTC	1 cut(s)	140
LmnI	GCTCC	3 cut(s)	601, 617, 648
LweI	GCATC	2 cut(s)	940, 964
MaeI	CTAG	1 cut(s)	581
MaeIII	GTNAC	3 cut(s)	304, 692, 911
MalI	GATC	4 cut(s)	279, 374, 839, 1032
MboI	GATC	4 cut(s)	277, 372, 837, 1030
MboII	GAAGA	4 cut(s)	82, 157, 637, 1025
MfeI	CAATTG	1 cut(s)	1048
MflI	RGATCY	2 cut(s)	277, 1030
MhlI	GDGCHC	1 cut(s)	645
MlsI	TGGCCA	1 cut(s)	438
MluCI	AATT	7 cut(s)	419, 456, 682, 854, 1023, 1040, 1048
MluNI	TGGCCA	1 cut(s)	438
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	2 cut(s)	556, 1038
Mox20I	TGGCCA	1 cut(s)	438
MroI	TCCGGA	2 cut(s)	113, 223
MroNI	GCCGGC	1 cut(s)	531
MroXI	GAANNNNTTC	2 cut(s)	257, 847
MscI	TGGCCA	1 cut(s)	438
MseI	TTAA	4 cut(s)	132, 738, 771, 1022
MslI	CAYNNNNRTG	2 cut(s)	702, 940
Msp20I	TGGCCA	1 cut(s)	438
MspI	CCGG	6 cut(s)	77, 114, 127, 224, 266, 532
MspR9I	CCNGG	4 cut(s)	413, 563, 622, 786
MunI	CAATTG	1 cut(s)	1048
MvaI	CCWGG	4 cut(s)	413, 563, 622, 786
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	1 cut(s)	878
NaeI	GCCGGC	1 cut(s)	533
NcoI	CCATGG	2 cut(s)	20, 651
NdeII	GATC	4 cut(s)	277, 372, 837, 1030
NgoMIV	GCCGGC	1 cut(s)	531
NlaIV	GGNNCC	5 cut(s)	75, 279, 493, 619, 644
NmuCI	GTSAC	1 cut(s)	692
NspI	RCATGY	2 cut(s)	885, 945
PaeR7I	CTCGAG	1 cut(s)	506
PagI	TCATGA	1 cut(s)	594
PciSI	GCTCTTC	1 cut(s)	140
PdiI	GCCGGC	1 cut(s)	533
PdmI	GAANNNNTTC	2 cut(s)	257, 847
PfeI	GAWTC	2 cut(s)	110, 900
PkrI	GCNGC	1 cut(s)	170
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
Psp6I	CCWGG	4 cut(s)	411, 561, 620, 784
PspEI	GGTNACC	1 cut(s)	692
PspFI	CCCAGC	2 cut(s)	179, 527
PspGI	CCWGG	4 cut(s)	411, 561, 620, 784
PspN4I	GGNNCC	5 cut(s)	75, 279, 493, 619, 644
PsuI	RGATCY	2 cut(s)	277, 1030
RsaI	GTAC	5 cut(s)	363, 398, 410, 560, 716
RsaNI	GTAC	5 cut(s)	362, 397, 409, 559, 715
RseI	CAYNNNNRTG	2 cut(s)	702, 940
SapI	GCTCTTC	1 cut(s)	140
SaqAI	TTAA	4 cut(s)	132, 738, 771, 1022
SatI	GCNGC	1 cut(s)	169
Sau3AI	GATC	4 cut(s)	277, 372, 837, 1030
ScaI	AGTACT	1 cut(s)	398
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	4 cut(s)	413, 563, 622, 786
SduI	GDGCHC	1 cut(s)	645
SfaNI	GCATC	2 cut(s)	940, 964
SfcI	CTRYAG	3 cut(s)	790, 919, 987
Sfr274I	CTCGAG	1 cut(s)	506
SlaI	CTCGAG	1 cut(s)	506
SmiMI	CAYNNNNRTG	2 cut(s)	702, 940
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
Sse9I	AATT	7 cut(s)	419, 456, 682, 854, 1023, 1040, 1048
SsiI	CCGC	1 cut(s)	169
SspMI	CTAG	1 cut(s)	581
StyD4I	CCNGG	4 cut(s)	411, 561, 620, 784
StyI	CCWWGG	3 cut(s)	20, 69, 651
TaaI	ACNGT	3 cut(s)	106, 550, 611
TaqI	TCGA	2 cut(s)	507, 903
TasI	AATT	7 cut(s)	419, 456, 682, 854, 1023, 1040, 1048
TatI	WGTACW	3 cut(s)	361, 396, 714
TauI	GCSGC	1 cut(s)	171
TfiI	GAWTC	2 cut(s)	110, 900
Tru1I	TTAA	4 cut(s)	132, 738, 771, 1022
Tru9I	TTAA	4 cut(s)	132, 738, 771, 1022
TseFI	GTSAC	1 cut(s)	692
Tsp45I	GTSAC	1 cut(s)	692
TspDTI	ATGAA	5 cut(s)	220, 250, 583, 676, 971
XapI	RAATTY	2 cut(s)	456, 682
XceI	RCATGY	2 cut(s)	885, 945
XcmI	CCANNNNNNNNNTGG	1 cut(s)	685
XhoI	CTCGAG	1 cut(s)	506
XmnI	GAANNNNTTC	2 cut(s)	257, 847
XspI	CTAG	1 cut(s)	581
ZrmI	AGTACT	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.