Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0004903

Physical Location & Seq

Genomic Coordinates Reverse (-)

3037914 .. 3040101

Gene Structure 2188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g04090.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGCATTCGTATACATTTCATGTTTTCTTTTAACTCAAATCCTGCTTCAAGTTGCAAAACATGAGGCTAAAGTTCCAGCAGTTATTGTGTTTGGGGACTCATCTGTGGATTCTGGGAACAACAATGGGATTTCCACACTTCTGAAGAGCAACTTCAAGCCGTATGGCCGTGACTTTGACGGTGGTCAGCCGACAGGGAGGTTCTCCAATGGCCGAGTTCCACCGGATTTTGTTTCCGAGGCTTTCGGGCTCAAAACTTCGGTCCCTGCATACTTGGACCCCAAGTTTGGCATTTCAGATTTTGTCAATGGTGTTTGCTTTGCTTCTGCTGGAACTGGCTATGATAATGCAACTTCTGATGTGCTAAATGTGATACCACTGTGGAAAGAAGTGGAGTACTACAAGGAGTACCAGAACAAACTCAAAGCCTATGTTGGCCATGACAAGGCAAAAGAGATTCTGACAGAGGCCTTATACTTGATAAGCTTAGGAACAAACGACTTCCTCGAGAACTACTACTTATTGCCCCGCCGGCGAATGCAATTCACAGTCCGGCAGTACGAGGATTTCCTCGTTGGACTTTCCAAAAACTTCATTAGGGAAATCTACAGTCTAGGGGTCAGGAAAATATCCCTAACTGGGCTTCCTCCGATGGGGTGTTTGCCATTAGAGAGAGCCAGCAATTTCATGGCAATTAATGAATGCATGCAGGAATATAACAATGTGGCCGTGGAATTTAATGGGAAATTGAAAAATATGGTGGCAAAGCTGAATCAAGAGCTTCCAGGGCTTAGAATGCTATTTACAGAAAAAATATATCCGCTGTTCTACCAAATCATCAAAACACCTTCATCTTATGGATTTGAGTATGCTGACAAGGCATGTTGTGCTACTGGGACATTCGAGATGAGTTACCTCTGTAATCAGAACAACCCATATACGTGCGCAGATGCAAGTAAGTTCGTATTTTGGGATGCCTTCCATCCAACGGAGAAAACAAATAAGATACTCGCAGACCATGTAATTGGCGATCTTTTAGATACCTTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

351

Amino Acids

39.43

Weight (kDa)

5.9

Isoelectric Point (pI)

26.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004903)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g41871 FvH4_6g41871 FvH4_6g41873
malus_domestica	MD09G1116600.v1.1
prunus_persica	Prupe.3G208100_v2.0.a1 Prupe.3G208100_v2.0.a1
pyrus_communis	pycom09g04090
rosa_chinensis	RchiOBHm_Chr2g0157731 RchiOBHm_Chr2g0157741
rosa_laevigata	RLG00000021014 RLG00000021015
rosa_multiflora	Rmu_sc0001275.1_g000015 Rmu_sc0001275.1_g000016 Rmu_sc0016846.1_g000001 Rmu_sc0019633.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091990 Rroxscaffold_2G00092000
rosa_rugosa	Rorug02G0463200 Rorug02G0463300
rosa_samantha	Rh2AG527900 Rh2AG528000 Rh2AG528100 Rh2BG542300 Rh2BG542400 Rh2CG512300 Rh2CG512400 Rh2DG551200 Rh2DG551300
rosa_wichuraiana	Rw2G043680 Rw2G043690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	946
AccI	GTMKAC	1 cut(s)	12
AciI	CCGC	2 cut(s)	529, 821
AcoI	YGGCCR	4 cut(s)	166, 211, 436, 726
AcsI	RAATTY	1 cut(s)	734
AcuI	CTGAAG	1 cut(s)	164
AfaI	GTAC	3 cut(s)	398, 410, 560
AfiI	CCNNNNNNNGG	5 cut(s)	287, 445, 639, 653, 988
AgsI	TTSAA	3 cut(s)	50, 157, 751
AjnI	CCWGG	1 cut(s)	784
AluBI	AGCT	3 cut(s)	486, 769, 781
AluI	AGCT	3 cut(s)	486, 769, 781
Ama87I	CYCGRG	1 cut(s)	506
AoxI	GGCC	5 cut(s)	166, 211, 436, 468, 726
ApoI	RAATTY	1 cut(s)	734
ArsI	GACNNNNNNTTYG	4 cut(s)	246, 269, 278, 301
AseI	ATTAAT	1 cut(s)	696
AspLEI	GCGC	1 cut(s)	947
AspS9I	GGNCC	2 cut(s)	262, 277
AvaI	CYCGRG	1 cut(s)	506
AvaII	GGWCC	2 cut(s)	262, 277
BaeI	ACNNNNGTAYC	2 cut(s)	365, 398
BalI	TGGCCA	1 cut(s)	438
BanII	GRGCYC	1 cut(s)	252
BccI	CCATC	2 cut(s)	646, 990
BceAI	ACGGC	3 cut(s)	145, 153, 713
BciT130I	CCWGG	1 cut(s)	786
BfaI	CTAG	1 cut(s)	614
BfmI	CTRYAG	1 cut(s)	607
BglI	GCCNNNNNGGC	1 cut(s)	532
BmcAI	AGTACT	1 cut(s)	398
Bme1390I	CCNGG	1 cut(s)	786
Bme18I	GGWCC	2 cut(s)	262, 277
BmeT110I	CYCGRG	1 cut(s)	506
BmgT120I	GGNCC	2 cut(s)	262, 277
BmiI	GGNNCC	2 cut(s)	264, 279
BmrFI	CCNGG	1 cut(s)	786
BmrI	ACTGGG	2 cut(s)	648, 903
BmsI	GCATC	2 cut(s)	940, 964
BmuI	ACTGGG	2 cut(s)	648, 903
BoxI	GACNNNNGTC	1 cut(s)	183
Bpu10I	CCTNAGC	1 cut(s)	487
BsaAI	YACGTR	1 cut(s)	942
BsaJI	CCNNGG	3 cut(s)	237, 729, 785
BsaWI	WCCGGW	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	5 cut(s)	287, 445, 639, 653, 988
Bse118I	RCCGGY	1 cut(s)	531
Bse1I	ACTGG	3 cut(s)	340, 643, 898
BseBI	CCWGG	1 cut(s)	786
BseDI	CCNNGG	3 cut(s)	237, 729, 785
BseGI	GGATG	2 cut(s)	979, 982
BseLI	CCNNNNNNNGG	5 cut(s)	287, 445, 639, 653, 988
BseNI	ACTGG	3 cut(s)	340, 643, 898
BshFI	GGCC	5 cut(s)	168, 213, 438, 470, 728
BsiHKCI	CYCGRG	1 cut(s)	506
BsiSI	CCGG	3 cut(s)	224, 532, 553
BslFI	GGGAC	3 cut(s)	110, 248, 910
BslI	CCNNNNNNNGG	5 cut(s)	287, 445, 639, 653, 988
BsmFI	GGGAC	3 cut(s)	110, 248, 910
BsmI	GAATGC	4 cut(s)	5, 543, 707, 801
BsnI	GGCC	5 cut(s)	168, 213, 438, 470, 728
BsoBI	CYCGRG	1 cut(s)	506
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	1 cut(s)	1030
BspACI	CCGC	2 cut(s)	529, 821
BspANI	GGCC	5 cut(s)	168, 213, 438, 470, 728
BspLI	GGNNCC	2 cut(s)	264, 279
BspQI	GCTCTTC	1 cut(s)	140
BsrFI	RCCGGY	1 cut(s)	531
BsrI	ACTGG	3 cut(s)	340, 643, 898
BssAI	RCCGGY	1 cut(s)	531
BssECI	CCNNGG	3 cut(s)	237, 729, 785
BssMI	GATC	1 cut(s)	1030
BssNAI	GTATAC	1 cut(s)	13
Bst1107I	GTATAC	1 cut(s)	13
Bst2UI	CCWGG	1 cut(s)	786
Bst4CI	ACNGT	4 cut(s)	182, 381, 550, 611
Bst6I	CTCTTC	1 cut(s)	140
BstAPI	GCANNNNNTGC	1 cut(s)	887
BstBAI	YACGTR	1 cut(s)	942
BstC8I	GCNNGC	3 cut(s)	533, 679, 707
BstDEI	CTNAG	2 cut(s)	487, 791
BstDSI	CCRYGG	1 cut(s)	729
BstF5I	GGATG	2 cut(s)	979, 982
BstHHI	GCGC	1 cut(s)	947
BstKTI	GATC	1 cut(s)	1033
BstMBI	GATC	1 cut(s)	1030
BstMWI	GCNNNNNNNGC	5 cut(s)	532, 787, 796, 878, 887
BstNI	CCWGG	1 cut(s)	786
BstNSI	RCATGY	2 cut(s)	709, 885
BstPAI	GACNNNNGTC	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	784
BstSFI	CTRYAG	1 cut(s)	607
BstXI	CCANNNNNNTGG	1 cut(s)	1025
BstZ17I	GTATAC	1 cut(s)	13
BsuRI	GGCC	5 cut(s)	168, 213, 438, 470, 728
BtgI	CCRYGG	1 cut(s)	729
BtsCI	GGATG	2 cut(s)	979, 982
BtsIMutI	CAGTG	1 cut(s)	377
Cac8I	GCNNGC	3 cut(s)	533, 679, 707
CfoI	GCGC	1 cut(s)	947
Cfr10I	RCCGGY	1 cut(s)	531
Cfr13I	GGNCC	2 cut(s)	262, 277
Csp6I	GTAC	3 cut(s)	397, 409, 559
CviAII	CATG	7 cut(s)	21, 62, 440, 688, 706, 882, 1019
CviQI	GTAC	3 cut(s)	397, 409, 559
DdeI	CTNAG	2 cut(s)	487, 791
DpnI	GATC	1 cut(s)	1032
DpnII	GATC	1 cut(s)	1030
EaeI	YGGCCR	4 cut(s)	166, 211, 436, 726
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
Eco147I	AGGCCT	1 cut(s)	470
Eco24I	GRGCYC	1 cut(s)	252
Eco47I	GGWCC	2 cut(s)	262, 277
Eco57I	CTGAAG	1 cut(s)	164
Eco88I	CYCGRG	1 cut(s)	506
EcoRII	CCWGG	1 cut(s)	784
EcoT22I	ATGCAT	1 cut(s)	707
EcoT38I	GRGCYC	1 cut(s)	252
FaeI	CATG	7 cut(s)	24, 65, 443, 691, 709, 885, 1022
FalI	AAGNNNNNCTT	2 cut(s)	137, 169
FaqI	GGGAC	3 cut(s)	110, 248, 910
FatI	CATG	7 cut(s)	20, 61, 439, 687, 705, 881, 1018
FauI	CCCGC	1 cut(s)	536
FblI	GTMKAC	1 cut(s)	12
FokI	GGATG	2 cut(s)	969, 986
FriOI	GRGCYC	1 cut(s)	252
FspBI	CTAG	1 cut(s)	614
FspI	TGCGCA	1 cut(s)	946
GlaI	GCGC	1 cut(s)	946
HaeIII	GGCC	5 cut(s)	168, 213, 438, 470, 728
HapII	CCGG	3 cut(s)	224, 532, 553
HhaI	GCGC	1 cut(s)	947
Hin1II	CATG	7 cut(s)	24, 65, 443, 691, 709, 885, 1022
Hin6I	GCGC	1 cut(s)	945
HinP1I	GCGC	1 cut(s)	945
HindIII	AAGCTT	1 cut(s)	484
HinfI	GANTC	4 cut(s)	98, 110, 457, 772
HpaII	CCGG	3 cut(s)	224, 532, 553
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	7 cut(s)	144, 238, 298, 358, 462, 651, 927
Hpy188III	TCNNGA	4 cut(s)	508, 622, 776, 904
Hpy8I	GTNNAC	1 cut(s)	13
HpyAV	CCTTC	2 cut(s)	858, 988
HpyCH4III	ACNGT	4 cut(s)	182, 381, 550, 611
HpyCH4IV	ACGT	1 cut(s)	941
HpyCH4V	TGCA	7 cut(s)	56, 269, 350, 541, 705, 709, 953
HpyF10VI	GCNNNNNNNGC	5 cut(s)	532, 787, 796, 878, 887
HpyF3I	CTNAG	2 cut(s)	487, 791
HpySE526I	ACGT	1 cut(s)	941
Hsp92II	CATG	7 cut(s)	24, 65, 443, 691, 709, 885, 1022
HspAI	GCGC	1 cut(s)	945
KroI	GCCGGC	1 cut(s)	531
KroNI	GCCGGC	1 cut(s)	533
Kzo9I	GATC	1 cut(s)	1030
LguI	GCTCTTC	1 cut(s)	140
LweI	GCATC	2 cut(s)	940, 964
MaeI	CTAG	1 cut(s)	614
MaeII	ACGT	1 cut(s)	941
MaeIII	GTNAC	2 cut(s)	170, 911
MalI	GATC	1 cut(s)	1032
MboI	GATC	1 cut(s)	1030
MboII	GAAGA	1 cut(s)	157
MhlI	GDGCHC	1 cut(s)	252
MlsI	TGGCCA	1 cut(s)	438
MluCI	AATT	7 cut(s)	542, 682, 693, 734, 746, 1023, 1048
MluNI	TGGCCA	1 cut(s)	438
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	2 cut(s)	556, 1010
MnlI	CCTC	9 cut(s)	58, 192, 232, 460, 515, 556, 581, 657, 926
Mox20I	TGGCCA	1 cut(s)	438
Mph1103I	ATGCAT	1 cut(s)	707
MreI	CGCCGGCG	1 cut(s)	531
MroNI	GCCGGC	1 cut(s)	531
MscI	TGGCCA	1 cut(s)	438
MseI	TTAA	4 cut(s)	32, 696, 738, 1047
MslI	CAYNNNNRTG	1 cut(s)	940
Msp20I	TGGCCA	1 cut(s)	438
MspA1I	CMGCKG	1 cut(s)	823
MspI	CCGG	3 cut(s)	224, 532, 553
MspR9I	CCNGG	1 cut(s)	786
Mva1269I	GAATGC	4 cut(s)	5, 543, 707, 801
MvaI	CCWGG	1 cut(s)	786
MwoI	GCNNNNNNNGC	5 cut(s)	532, 787, 796, 878, 887
NaeI	GCCGGC	1 cut(s)	533
NdeII	GATC	1 cut(s)	1030
NgoMIV	GCCGGC	1 cut(s)	531
NlaIII	CATG	7 cut(s)	24, 65, 443, 691, 709, 885, 1022
NlaIV	GGNNCC	2 cut(s)	264, 279
NmeAIII	GCCGAG	1 cut(s)	239
NmuCI	GTSAC	1 cut(s)	170
NsbI	TGCGCA	1 cut(s)	946
NsiI	ATGCAT	1 cut(s)	707
NspI	RCATGY	2 cut(s)	709, 885
PaeI	GCATGC	1 cut(s)	709
PaeR7I	CTCGAG	1 cut(s)	506
PceI	AGGCCT	1 cut(s)	470
PciSI	GCTCTTC	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	1 cut(s)	504
PctI	GAATGC	4 cut(s)	5, 543, 707, 801
PdiI	GCCGGC	1 cut(s)	533
PfeI	GAWTC	3 cut(s)	110, 457, 772
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
Ppu21I	YACGTR	1 cut(s)	942
PshAI	GACNNNNGTC	1 cut(s)	183
PshBI	ATTAAT	1 cut(s)	696
Psp6I	CCWGG	1 cut(s)	784
PspGI	CCWGG	1 cut(s)	784
PspN4I	GGNNCC	2 cut(s)	264, 279
PspPI	GGNCC	2 cut(s)	262, 277
RsaI	GTAC	3 cut(s)	398, 410, 560
RsaNI	GTAC	3 cut(s)	397, 409, 559
RseI	CAYNNNNRTG	1 cut(s)	940
SapI	GCTCTTC	1 cut(s)	140
SaqAI	TTAA	4 cut(s)	32, 696, 738, 1047
Sau3AI	GATC	1 cut(s)	1030
Sau96I	GGNCC	2 cut(s)	262, 277
ScaI	AGTACT	1 cut(s)	398
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	1 cut(s)	786
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	8 cut(s)	203, 488, 771, 783, 850, 918, 944, 1046
SfaNI	GCATC	2 cut(s)	940, 964
SfcI	CTRYAG	1 cut(s)	607
Sfr274I	CTCGAG	1 cut(s)	506
SgrAI	CRCCGGYG	1 cut(s)	531
SinI	GGWCC	2 cut(s)	262, 277
SlaI	CTCGAG	1 cut(s)	506
SmiMI	CAYNNNNRTG	1 cut(s)	940
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
SphI	GCATGC	1 cut(s)	709
Sse9I	AATT	7 cut(s)	542, 682, 693, 734, 746, 1023, 1048
SseBI	AGGCCT	1 cut(s)	470
SsiI	CCGC	2 cut(s)	529, 821
SspMI	CTAG	1 cut(s)	614
StuI	AGGCCT	1 cut(s)	470
StyD4I	CCNGG	1 cut(s)	784
TaaI	ACNGT	4 cut(s)	182, 381, 550, 611
TaiI	ACGT	1 cut(s)	944
TaqI	TCGA	2 cut(s)	507, 903
TaqII	GACCGA	1 cut(s)	250
TasI	AATT	7 cut(s)	542, 682, 693, 734, 746, 1023, 1048
TatI	WGTACW	1 cut(s)	396
TfiI	GAWTC	3 cut(s)	110, 457, 772
Tru1I	TTAA	4 cut(s)	32, 696, 738, 1047
Tru9I	TTAA	4 cut(s)	32, 696, 738, 1047
TscAI	CASTG	1 cut(s)	384
TseFI	GTSAC	1 cut(s)	170
Tsp45I	GTSAC	1 cut(s)	170
TspDTI	ATGAA	5 cut(s)	9, 583, 676, 714, 840
TspGWI	ACGGA	1 cut(s)	1004
TspRI	CASTG	1 cut(s)	384
VpaK11BI	GGWCC	2 cut(s)	262, 277
VspI	ATTAAT	1 cut(s)	696
XapI	RAATTY	1 cut(s)	734
XceI	RCATGY	2 cut(s)	709, 885
XcmI	CCANNNNNNNNNTGG	1 cut(s)	685
XhoI	CTCGAG	1 cut(s)	506
XmiI	GTMKAC	1 cut(s)	12
XspI	CTAG	1 cut(s)	614
ZrmI	AGTACT	1 cut(s)	398
Zsp2I	ATGCAT	1 cut(s)	707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.