Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006220

Physical Location & Seq

Genomic Coordinates Reverse (-)

23366973 .. 23368985

Gene Structure 2013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G239300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGGCTGTGGTTCCAATATGCTACAAAATCCCATACAAAGGCAATGCTCAACTGAATCATTATGCAATGAGACAGAGTGATATGTCTAGCAATATGTGCAGGAATTGGCATATTTCTTCATTTCTTAGCACTGATGTGTTGACACAAAAGAAGACAAGAGAGGCAAGTGCATCTAAAGAACTAGAAAGCCATCCAAGTTTCATTTTAGCAAATAATGAAAGAAAGCAGAATATAGGCATGGTTTGGTATGCATCAGATTCTGGTACAAATGAGAAGCAACTCAGATCTTTAGATTCCTATCTTGGGAAACTCCAAAATGGCACAAATCTGCCTGCAGATAAGTCAAACAGGACAAGGGAGCCACTCACTAGAAATGGTCAGTTGAGATTAAAGAAGGGGTTGGAGTCTCTTGATGGTTATTTTGGAAAACTTAATAAAGATGGAGACTCAGAGAATTATACATTTAGTTCTGTTGATCTTACTGAAGACAATCCTACTGAAAAACTATCATCTATCAATCAAGATTCTGAAAAATCTGATAAGAGGGAAGAACAGAAGAGCTACAGAAATCCTGCAAGTACAAGGGATGATCATGGTCCTCAGAGCTCTCAAGATTCACTGCAGTATAATGAAATCTCTGATCTCTACTTAATAAGCATATTGGGTTCTATAAATATTGCAGTTTTTCTGTTTGAGATAGCAAGTCCAGTTAGGAGTTCTGACTTAGGGCTCTTTTCTCTTCCATTACTATATGGAGCAAAGATAAATGGTTTGATCCTGGTTGGAGAATGGTGGAGGCTTGTGACACCCATGTTTCTGCACTCAGGATTCTTTCACATAGTCGTTGGCTGTTGGGGGCTTGTGACATTTGGGCCTAAAGTGTGCAGAGGCTATGGTTCATTTACATTTTTCTTGATTTACATACTTGGAGGAATCTCTGGCAACTTGATTAGCTTTCTTCATACACCAGAGCCAACTGTTGGTGGAACAGGACCAATATTTGCCATGATGGGAGCTTGGCTCACTTATCAGGTCCAGAACAAAGACATAATTTCAAAGGAAGTTTCAGAGGGCATGTTCCGAAAAGCAGTAATAACTACGCTTCTTAGCTTCACATTGAGCTGTTTTGGTCCAATTGATGACTGGACACATCTTGGAGCTGCATTTACAGGCGTGGCATATGGGTTTTTGACATGCCCAACTCTTCAACTGGACGATGCATCATCTTCAACAAGTGGCCAAGAGGAAGGCATCACACTTGTCAGACGTTATGCTGATCCTTGCAAATCACTGTTTTTCTTTACCTTGTTTGCTCTTGTTTTAACTTGTTTGCTTTTCTTTGTTGAACCTCCACTGAATGTCATTGCATCAGACACTTCTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

462

Amino Acids

51.23

Weight (kDa)

5.95

Isoelectric Point (pI)

41.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38510 AT5G38510 AT5G38510
fragaria_vesca	FvH4_6g45321 FvH4_6g45321 FvH4_6g45321
malus_domestica	MD09G1085700.v1.1 MD17G1074600.v1.1
prunus_persica	Prupe.3G239300_v2.0.a1
pyrus_communis	pycom09g01080 pycom09g01090 pycom17g07540
rosa_chinensis	RchiOBHm_Chr2g0163101
rosa_laevigata	RLG00000021373
rosa_multiflora	Rmu_sc0003555.1_g000002 Rmu_sc0003984.1_g000017
rosa_roxburghii	Rroxscaffold_2G00087550
rosa_rugosa	Rorug02G0500400 Rorug02G0500500 Rorug02G0500500 Rorug02G0500500 Rorug02G0500500
rosa_samantha	Rh2AG566800 Rh2BG579100 Rh2CG549000 Rh2DG589400
rosa_wichuraiana	Rw2G046930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	980
AclWI	GGATC	2 cut(s)	769, 1271
AcoI	YGGCCR	1 cut(s)	1237
AcuI	CTGAAG	1 cut(s)	504
AfaI	GTAC	2 cut(s)	265, 580
AfiI	CCNNNNNNNGG	3 cut(s)	38, 303, 980
AgsI	TTSAA	4 cut(s)	1056, 1208, 1230, 1346
AjnI	CCWGG	1 cut(s)	777
AleI	CACNNNNGTG	1 cut(s)	134
AluBI	AGCT	7 cut(s)	561, 606, 954, 1016, 1110, 1122, 1160
AluI	AGCT	7 cut(s)	561, 606, 954, 1016, 1110, 1122, 1160
Alw21I	GWGCWC	1 cut(s)	608
Alw26I	GTCTC	3 cut(s)	64, 411, 438
AlwI	GGATC	2 cut(s)	769, 1271
AlwNI	CAGNNNCTG	1 cut(s)	260
AoxI	GGCC	2 cut(s)	872, 1237
ApeKI	GCWGC	1 cut(s)	1160
AspS9I	GGNCC	5 cut(s)	596, 872, 992, 1033, 1130
AvaII	GGWCC	4 cut(s)	596, 992, 1033, 1130
BalI	TGGCCA	1 cut(s)	1239
BanII	GRGCYC	2 cut(s)	608, 732
BbsI	GAAGAC	2 cut(s)	158, 492
Bbv12I	GWGCWC	1 cut(s)	608
BbvI	GCAGC	1 cut(s)	1147
BccI	CCATC	4 cut(s)	198, 407, 434, 1003
BciT130I	CCWGG	1 cut(s)	779
BclI	TGATCA	1 cut(s)	589
BcoDI	GTCTC	3 cut(s)	64, 411, 438
BfaI	CTAG	3 cut(s)	87, 182, 369
BfmI	CTRYAG	3 cut(s)	333, 562, 620
BglII	AGATCT	1 cut(s)	284
BisI	GCNGC	1 cut(s)	1161
BlsI	GCNGC	1 cut(s)	1162
Bme1390I	CCNGG	1 cut(s)	779
Bme18I	GGWCC	4 cut(s)	596, 992, 1033, 1130
BmgT120I	GGNCC	5 cut(s)	596, 872, 992, 1033, 1130
BmiI	GGNNCC	2 cut(s)	12, 360
BmrFI	CCNGG	1 cut(s)	779
BmsI	GCATC	6 cut(s)	179, 260, 1207, 1229, 1260, 1376
BpiI	GAAGAC	2 cut(s)	158, 492
BplI	GAGNNNNNCTC	2 cut(s)	1005, 1037
BpuEI	CTTGAG	1 cut(s)	594
BsaBI	GATNNNNATC	1 cut(s)	297
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 303, 980
Bse1I	ACTGG	3 cut(s)	707, 1148, 1215
Bse3DI	GCAATG	3 cut(s)	49, 72, 1362
Bse8I	GATNNNNATC	1 cut(s)	297
BseBI	CCWGG	1 cut(s)	779
BseGI	GGATG	2 cut(s)	190, 592
BseJI	GATNNNNATC	1 cut(s)	297
BseLI	CCNNNNNNNGG	3 cut(s)	38, 303, 980
BseMI	GCAATG	3 cut(s)	49, 72, 1362
BseMII	CTCAG	4 cut(s)	295, 462, 614, 837
BseNI	ACTGG	3 cut(s)	707, 1148, 1215
BseXI	GCAGC	1 cut(s)	1147
BsgI	GTGCAG	3 cut(s)	118, 803, 904
BshFI	GGCC	2 cut(s)	874, 1239
BsiHKAI	GWGCWC	1 cut(s)	608
BslI	CCNNNNNNNGG	3 cut(s)	38, 303, 980
BsmAI	GTCTC	3 cut(s)	64, 411, 438
BsnI	GGCC	2 cut(s)	874, 1239
Bsp1286I	GDGCHC	2 cut(s)	608, 732
Bsp143I	GATC	6 cut(s)	284, 475, 589, 640, 774, 1276
BspANI	GGCC	2 cut(s)	874, 1239
BspCNI	CTCAG	4 cut(s)	294, 461, 613, 836
BspLI	GGNNCC	2 cut(s)	12, 360
BspMAI	CTGCAG	2 cut(s)	337, 624
BspPI	GGATC	2 cut(s)	769, 1271
BspQI	GCTCTTC	1 cut(s)	551
BsrDI	GCAATG	3 cut(s)	49, 72, 1362
BsrI	ACTGG	3 cut(s)	707, 1148, 1215
BssMI	GATC	6 cut(s)	284, 475, 589, 640, 774, 1276
Bst2UI	CCWGG	1 cut(s)	779
Bst4CI	ACNGT	2 cut(s)	979, 1293
Bst6I	CTCTTC	3 cut(s)	551, 744, 1209
BstAPI	GCANNNNNTGC	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	7 cut(s)	125, 281, 448, 600, 724, 823, 1106
BstF5I	GGATG	2 cut(s)	190, 592
BstKTI	GATC	6 cut(s)	287, 478, 592, 643, 777, 1279
BstMAI	GTCTC	3 cut(s)	64, 411, 438
BstMBI	GATC	6 cut(s)	284, 475, 589, 640, 774, 1276
BstMWI	GCNNNNNNNGC	1 cut(s)	96
BstNI	CCWGG	1 cut(s)	779
BstNSI	RCATGY	2 cut(s)	1078, 1197
BstSCI	CCNGG	1 cut(s)	777
BstSFI	CTRYAG	3 cut(s)	333, 562, 620
BstV1I	GCAGC	1 cut(s)	1147
BstV2I	GAAGAC	2 cut(s)	158, 492
BstX2I	RGATCY	1 cut(s)	284
BstYI	RGATCY	1 cut(s)	284
BsuRI	GGCC	2 cut(s)	874, 1239
BtsCI	GGATG	2 cut(s)	190, 592
BtsI	GCAGTG	1 cut(s)	617
BtsIMutI	CAGTG	4 cut(s)	129, 617, 1289, 1352
Cac8I	GCNNGC	1 cut(s)	333
CaiI	CAGNNNCTG	1 cut(s)	260
Cfr13I	GGNCC	5 cut(s)	596, 872, 992, 1033, 1130
Csp6I	GTAC	2 cut(s)	264, 579
CviAII	CATG	6 cut(s)	238, 593, 811, 1006, 1075, 1194
CviQI	GTAC	2 cut(s)	264, 579
DdeI	CTNAG	7 cut(s)	125, 281, 448, 600, 724, 823, 1106
DpnI	GATC	6 cut(s)	286, 477, 591, 642, 776, 1278
DpnII	GATC	6 cut(s)	284, 475, 589, 640, 774, 1276
EaeI	YGGCCR	1 cut(s)	1237
Eam1104I	CTCTTC	3 cut(s)	551, 744, 1209
EarI	CTCTTC	3 cut(s)	551, 744, 1209
Ecl136II	GAGCTC	1 cut(s)	606
Eco24I	GRGCYC	2 cut(s)	608, 732
Eco47I	GGWCC	4 cut(s)	596, 992, 1033, 1130
Eco53kI	GAGCTC	1 cut(s)	606
Eco57I	CTGAAG	1 cut(s)	504
EcoICRI	GAGCTC	1 cut(s)	606
EcoRII	CCWGG	1 cut(s)	777
EcoT22I	ATGCAT	2 cut(s)	253, 1222
EcoT38I	GRGCYC	2 cut(s)	608, 732
FaeI	CATG	6 cut(s)	241, 596, 814, 1009, 1078, 1197
FatI	CATG	6 cut(s)	237, 592, 810, 1005, 1074, 1193
FauNDI	CATATG	1 cut(s)	1180
FbaI	TGATCA	1 cut(s)	589
Fnu4HI	GCNGC	1 cut(s)	1161
FokI	GGATG	2 cut(s)	177, 599
FriOI	GRGCYC	2 cut(s)	608, 732
Fsp4HI	GCNGC	1 cut(s)	1161
FspBI	CTAG	3 cut(s)	87, 182, 369
GluI	GCNGC	1 cut(s)	1161
HaeIII	GGCC	2 cut(s)	874, 1239
Hin1II	CATG	6 cut(s)	241, 596, 814, 1009, 1078, 1197
HincII	GTYRAC	1 cut(s)	141
HindII	GTYRAC	1 cut(s)	141
HinfI	GANTC	9 cut(s)	55, 257, 293, 404, 446, 524, 614, 828, 933
Hpy166II	GTNNAC	1 cut(s)	141
Hpy188III	TCNNGA	6 cut(s)	410, 521, 611, 825, 913, 1036
Hpy8I	GTNNAC	1 cut(s)	141
HpyAV	CCTTC	2 cut(s)	388, 1241
HpyCH4III	ACNGT	2 cut(s)	979, 1293
HpyCH4IV	ACGT	1 cut(s)	1267
HpyF10VI	GCNNNNNNNGC	1 cut(s)	96
HpyF3I	CTNAG	7 cut(s)	125, 281, 448, 600, 724, 823, 1106
HpySE526I	ACGT	1 cut(s)	1267
Hsp92II	CATG	6 cut(s)	241, 596, 814, 1009, 1078, 1197
Ksp22I	TGATCA	1 cut(s)	589
Kzo9I	GATC	6 cut(s)	284, 475, 589, 640, 774, 1276
LguI	GCTCTTC	1 cut(s)	551
LmnI	GCTCC	4 cut(s)	358, 755, 1013, 1157
Lsp1109I	GCAGC	1 cut(s)	1147
LweI	GCATC	6 cut(s)	179, 260, 1207, 1229, 1260, 1376
MaeI	CTAG	3 cut(s)	87, 182, 369
MaeII	ACGT	1 cut(s)	1267
MaeIII	GTNAC	2 cut(s)	802, 862
MalI	GATC	6 cut(s)	286, 477, 591, 642, 776, 1278
MboI	GATC	6 cut(s)	284, 475, 589, 640, 774, 1276
MboII	GAAGA	9 cut(s)	108, 163, 497, 560, 568, 731, 950, 1196, 1218
MfeI	CAATTG	1 cut(s)	1134
MflI	RGATCY	1 cut(s)	284
MhlI	GDGCHC	2 cut(s)	608, 732
MlsI	TGGCCA	1 cut(s)	1239
MluCI	AATT	4 cut(s)	103, 454, 1050, 1134
MluNI	TGGCCA	1 cut(s)	1239
MlyI	GAGTC	2 cut(s)	413, 440
MmeI	TCCRAC	2 cut(s)	381, 763
MnlI	CCTC	9 cut(s)	154, 537, 609, 789, 881, 923, 1063, 1237, 1359
Mox20I	TGGCCA	1 cut(s)	1239
Mph1103I	ATGCAT	2 cut(s)	253, 1222
MscI	TGGCCA	1 cut(s)	1239
MseI	TTAA	4 cut(s)	389, 432, 650, 1322
MslI	CAYNNNNRTG	1 cut(s)	134
Msp20I	TGGCCA	1 cut(s)	1239
MspR9I	CCNGG	1 cut(s)	779
MunI	CAATTG	1 cut(s)	1134
MvaI	CCWGG	1 cut(s)	779
MwoI	GCNNNNNNNGC	1 cut(s)	96
NdeI	CATATG	1 cut(s)	1180
NdeII	GATC	6 cut(s)	284, 475, 589, 640, 774, 1276
NlaIII	CATG	6 cut(s)	241, 596, 814, 1009, 1078, 1197
NlaIV	GGNNCC	2 cut(s)	12, 360
NmuCI	GTSAC	2 cut(s)	802, 862
NsiI	ATGCAT	2 cut(s)	253, 1222
NspI	RCATGY	2 cut(s)	1078, 1197
OliI	CACNNNNGTG	1 cut(s)	134
PciSI	GCTCTTC	1 cut(s)	551
PfeI	GAWTC	7 cut(s)	55, 257, 293, 524, 614, 828, 933
PflMI	CCANNNNNTGG	1 cut(s)	980
PkrI	GCNGC	1 cut(s)	1162
PleI	GAGTC	2 cut(s)	412, 440
PpsI	GAGTC	2 cut(s)	412, 440
Psp124BI	GAGCTC	1 cut(s)	608
Psp6I	CCWGG	1 cut(s)	777
PspGI	CCWGG	1 cut(s)	777
PspN4I	GGNNCC	2 cut(s)	12, 360
PspPI	GGNCC	5 cut(s)	596, 872, 992, 1033, 1130
PstI	CTGCAG	2 cut(s)	337, 624
PstNI	CAGNNNCTG	1 cut(s)	260
PsuI	RGATCY	1 cut(s)	284
RsaI	GTAC	2 cut(s)	265, 580
RsaNI	GTAC	2 cut(s)	264, 579
RseI	CAYNNNNRTG	1 cut(s)	134
SacI	GAGCTC	1 cut(s)	608
SapI	GCTCTTC	1 cut(s)	551
SaqAI	TTAA	4 cut(s)	389, 432, 650, 1322
SatI	GCNGC	1 cut(s)	1161
Sau3AI	GATC	6 cut(s)	284, 475, 589, 640, 774, 1276
Sau96I	GGNCC	5 cut(s)	596, 872, 992, 1033, 1130
SchI	GAGTC	2 cut(s)	413, 440
ScrFI	CCNGG	1 cut(s)	779
SduI	GDGCHC	2 cut(s)	608, 732
SfaNI	GCATC	6 cut(s)	179, 260, 1207, 1229, 1260, 1376
SfcI	CTRYAG	3 cut(s)	333, 562, 620
SinI	GGWCC	4 cut(s)	596, 992, 1033, 1130
SmiMI	CAYNNNNRTG	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	609
SmoI	CTYRAG	1 cut(s)	609
Sse9I	AATT	4 cut(s)	103, 454, 1050, 1134
SspI	AATATT	2 cut(s)	676, 999
SspMI	CTAG	3 cut(s)	87, 182, 369
SstI	GAGCTC	1 cut(s)	608
StyD4I	CCNGG	1 cut(s)	777
TaaI	ACNGT	2 cut(s)	979, 1293
TaiI	ACGT	1 cut(s)	1270
TasI	AATT	4 cut(s)	103, 454, 1050, 1134
TatI	WGTACW	1 cut(s)	578
TfiI	GAWTC	7 cut(s)	55, 257, 293, 524, 614, 828, 933
Tru1I	TTAA	4 cut(s)	389, 432, 650, 1322
Tru9I	TTAA	4 cut(s)	389, 432, 650, 1322
TscAI	CASTG	4 cut(s)	136, 624, 1296, 1359
TseFI	GTSAC	2 cut(s)	802, 862
TseI	GCWGC	1 cut(s)	1160
Tsp45I	GTSAC	2 cut(s)	802, 862
TspDTI	ATGAA	6 cut(s)	108, 190, 231, 645, 888, 950
TspRI	CASTG	4 cut(s)	136, 624, 1296, 1359
Van91I	CCANNNNNTGG	1 cut(s)	980
VpaK11BI	GGWCC	4 cut(s)	596, 992, 1033, 1130
XceI	RCATGY	2 cut(s)	1078, 1197
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1140
XspI	CTAG	3 cut(s)	87, 182, 369
Zsp2I	ATGCAT	2 cut(s)	253, 1222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.