Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0006220

Physical Location & Seq

Genomic Coordinates Forward (+)

863514 .. 865050

Gene Structure 1537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g01080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCCGTGGTTCCAATATGCTACAAAATGCCATATAGAGGCTGTGCTGAATCAAATCACTATGTAATCGGACAGAGGGACAGAGGGTTTCGATGTGATTGTATTCCAACCTCAGAAAATAATGCAAGAAAACATAAGATTCTTGGGATGGTTTGGTATGCTGCATCAGATTCTGGGAACCATTTGAGATCCTTGGATTCTTACTTTGGGAAGCTCCAAAACGTCACAAATGTGCCTCCGGATGATTCAAACACGACAAGGGAGCAACCACTCAGTAAAAATAATGGTCAGCTGAGACTAAAGGAGGGTTTGGAGTCTCTTGATGATTATCTTGGAAAACTTAGAAATAAAGATGGAGACTCGACGAAATCATCTAGTTCTGTTGATCTTGCTACTGAAGACATTCCAATTGCAAAACCATCAGCTATCAATCGAGATTCCGGAAAAGGTGATGAGAGGGTATTGAAGGCATACAGAAATCCTATACGTGAAAGGGATGATCTTGGTCCAAAGATTTCTAAAGACTCGCTCGAGTATAATGAAATCTCTGATCTCTACTTAATAAGCATATTAGGTTCTGTAAACATCGCAGTTTTTCTGTTCGAGATTGCGAGTCCGGTTAGGAACACTGACTTAGGGCTCTTCTCTCTTCCATTGCTATATGGAGCAAAGATAAATGGTGGTCCATTTGATCCTGGTTGGAGAATGGTGGAGGCTAGTCACACCCATGTTTCTGCACTCGGGGCTTTTCCACATAGCTGTTGGTTGCTGGGGACTTGTTGTATTTGGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

265

Amino Acids

29.23

Weight (kDa)

6.59

Isoelectric Point (pI)

40.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38510 AT5G38510 AT5G38510
fragaria_vesca	FvH4_6g45321 FvH4_6g45321 FvH4_6g45321
malus_domestica	MD09G1085700.v1.1 MD17G1074600.v1.1
prunus_persica	Prupe.3G239300_v2.0.a1
pyrus_communis	pycom09g01080 pycom09g01090 pycom17g07540
rosa_chinensis	RchiOBHm_Chr2g0163101
rosa_laevigata	RLG00000021373
rosa_multiflora	Rmu_sc0003555.1_g000002 Rmu_sc0003984.1_g000017
rosa_roxburghii	Rroxscaffold_2G00087550
rosa_rugosa	Rorug02G0500400 Rorug02G0500500 Rorug02G0500500 Rorug02G0500500 Rorug02G0500500
rosa_samantha	Rh2AG566800 Rh2BG579100 Rh2CG549000 Rh2DG589400
rosa_wichuraiana	Rw2G046930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	238, 440
AclWI	GGATC	2 cut(s)	183, 686
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	417
AfiI	CCNNNNNNNGG	1 cut(s)	38
AgsI	TTSAA	2 cut(s)	249, 466
AjnI	CCWGG	1 cut(s)	694
AleI	CACNNNNGTG	1 cut(s)	230
AluBI	AGCT	4 cut(s)	214, 292, 425, 759
AluI	AGCT	4 cut(s)	214, 292, 425, 759
Alw26I	GTCTC	3 cut(s)	289, 321, 351
AlwI	GGATC	2 cut(s)	183, 686
AlwNI	CAGNNNCTG	1 cut(s)	173
Ama87I	CYCGRG	2 cut(s)	530, 740
Aor13HI	TCCGGA	2 cut(s)	238, 440
AoxI	GGCC	2 cut(s)	3, 789
ApeKI	GCWGC	1 cut(s)	161
Asp700I	GAANNNNTTC	1 cut(s)	402
AspS9I	GGNCC	3 cut(s)	506, 683, 789
AsuHPI	GGTGA	1 cut(s)	461
AvaI	CYCGRG	2 cut(s)	530, 740
AvaII	GGWCC	2 cut(s)	506, 683
BanII	GRGCYC	1 cut(s)	642
BbsI	GAAGAC	1 cut(s)	405
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	3 cut(s)	142, 347, 427
BciT130I	CCWGG	1 cut(s)	696
BcoDI	GTCTC	3 cut(s)	289, 321, 351
BfaI	CTAG	2 cut(s)	375, 717
BisI	GCNGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	163
Bme1390I	CCNGG	1 cut(s)	696
Bme18I	GGWCC	2 cut(s)	506, 683
BmeT110I	CYCGRG	2 cut(s)	530, 740
BmgT120I	GGNCC	3 cut(s)	506, 683, 789
BmiI	GGNNCC	2 cut(s)	12, 179
BmrFI	CCNGG	1 cut(s)	696
BmsI	GCATC	1 cut(s)	173
BpiI	GAAGAC	1 cut(s)	405
BsaAI	YACGTR	1 cut(s)	488
BsaBI	GATNNNNATC	1 cut(s)	327
BsaJI	CCNNGG	2 cut(s)	6, 192
BsaWI	WCCGGW	3 cut(s)	238, 440, 616
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse3DI	GCAATG	1 cut(s)	653
Bse8I	GATNNNNATC	1 cut(s)	327
BseAI	TCCGGA	2 cut(s)	238, 440
BseBI	CCWGG	1 cut(s)	696
BseDI	CCNNGG	2 cut(s)	6, 192
BseGI	GGATG	3 cut(s)	153, 247, 502
BseJI	GATNNNNATC	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseMI	GCAATG	1 cut(s)	653
BseMII	CTCAG	3 cut(s)	126, 284, 286
BseXI	GCAGC	1 cut(s)	148
BseYI	CCCAGC	1 cut(s)	769
BsgI	GTGCAG	1 cut(s)	720
BshFI	GGCC	2 cut(s)	5, 791
BsiHKCI	CYCGRG	2 cut(s)	530, 740
BsiSI	CCGG	3 cut(s)	239, 441, 617
BslFI	GGGAC	2 cut(s)	92, 787
BslI	CCNNNNNNNGG	1 cut(s)	38
BsmAI	GTCTC	3 cut(s)	289, 321, 351
BsmFI	GGGAC	2 cut(s)	92, 787
BsnI	GGCC	2 cut(s)	5, 791
BsoBI	CYCGRG	2 cut(s)	530, 740
Bsp1286I	GDGCHC	1 cut(s)	642
Bsp13I	TCCGGA	2 cut(s)	238, 440
Bsp143I	GATC	5 cut(s)	188, 385, 499, 550, 691
BspANI	GGCC	2 cut(s)	5, 791
BspCNI	CTCAG	3 cut(s)	125, 285, 285
BspEI	TCCGGA	2 cut(s)	238, 440
BspLI	GGNNCC	2 cut(s)	12, 179
BspPI	GGATC	2 cut(s)	183, 686
BspQI	GCTCTTC	1 cut(s)	647
BsrDI	GCAATG	1 cut(s)	653
BssECI	CCNNGG	2 cut(s)	6, 192
BssMI	GATC	5 cut(s)	188, 385, 499, 550, 691
BssT1I	CCWWGG	1 cut(s)	192
Bst2UI	CCWGG	1 cut(s)	696
Bst6I	CTCTTC	2 cut(s)	647, 654
BstBAI	YACGTR	1 cut(s)	488
BstDEI	CTNAG	5 cut(s)	112, 272, 293, 341, 634
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	3 cut(s)	153, 247, 502
BstKTI	GATC	5 cut(s)	191, 388, 502, 553, 694
BstMAI	GTCTC	3 cut(s)	289, 321, 351
BstMBI	GATC	5 cut(s)	188, 385, 499, 550, 691
BstMWI	GCNNNNNNNGC	1 cut(s)	743
BstNI	CCWGG	1 cut(s)	696
BstSCI	CCNGG	1 cut(s)	694
BstV1I	GCAGC	1 cut(s)	148
BstV2I	GAAGAC	1 cut(s)	405
BstX2I	RGATCY	1 cut(s)	188
BstYI	RGATCY	1 cut(s)	188
BsuRI	GGCC	2 cut(s)	5, 791
BtgI	CCRYGG	1 cut(s)	6
BtgZI	GCGATG	1 cut(s)	571
BtsCI	GGATG	3 cut(s)	153, 247, 502
BtsIMutI	CAGTG	1 cut(s)	627
CaiI	CAGNNNCTG	1 cut(s)	173
Cfr13I	GGNCC	3 cut(s)	506, 683, 789
CviAII	CATG	1 cut(s)	728
DdeI	CTNAG	5 cut(s)	112, 272, 293, 341, 634
DpnI	GATC	5 cut(s)	190, 387, 501, 552, 693
DpnII	GATC	5 cut(s)	188, 385, 499, 550, 691
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	647, 654
EarI	CTCTTC	2 cut(s)	647, 654
Eco130I	CCWWGG	1 cut(s)	192
Eco24I	GRGCYC	1 cut(s)	642
Eco47I	GGWCC	2 cut(s)	506, 683
Eco57I	CTGAAG	1 cut(s)	417
Eco88I	CYCGRG	2 cut(s)	530, 740
EcoRII	CCWGG	1 cut(s)	694
EcoT14I	CCWWGG	1 cut(s)	192
EcoT38I	GRGCYC	1 cut(s)	642
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	1 cut(s)	731
FaqI	GGGAC	2 cut(s)	92, 787
FatI	CATG	1 cut(s)	727
Fnu4HI	GCNGC	1 cut(s)	162
FokI	GGATG	3 cut(s)	160, 254, 509
FriOI	GRGCYC	1 cut(s)	642
Fsp4HI	GCNGC	1 cut(s)	162
FspBI	CTAG	2 cut(s)	375, 717
GluI	GCNGC	1 cut(s)	162
GsaI	CCCAGC	1 cut(s)	773
HaeIII	GGCC	2 cut(s)	5, 791
HapII	CCGG	3 cut(s)	239, 441, 617
Hin1II	CATG	1 cut(s)	731
HpaII	CCGG	3 cut(s)	239, 441, 617
HphI	GGTGA	1 cut(s)	461
Hpy166II	GTNNAC	1 cut(s)	583
Hpy188I	TCNGA	4 cut(s)	71, 115, 169, 550
Hpy188III	TCNNGA	5 cut(s)	239, 320, 434, 441, 604
Hpy8I	GTNNAC	1 cut(s)	583
Hpy99I	CGWCG	1 cut(s)	367
HpyAV	CCTTC	1 cut(s)	460
HpyCH4IV	ACGT	2 cut(s)	222, 487
HpyCH4V	TGCA	4 cut(s)	125, 164, 413, 737
HpyF10VI	GCNNNNNNNGC	1 cut(s)	743
HpyF3I	CTNAG	5 cut(s)	112, 272, 293, 341, 634
HpySE526I	ACGT	2 cut(s)	222, 487
Hsp92II	CATG	1 cut(s)	731
Kpn2I	TCCGGA	2 cut(s)	238, 440
Kzo9I	GATC	5 cut(s)	188, 385, 499, 550, 691
LguI	GCTCTTC	1 cut(s)	647
LmnI	GCTCC	3 cut(s)	219, 262, 665
LpnPI	CCDG	7 cut(s)	159, 252, 454, 630, 681, 708, 755
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	1 cut(s)	173
MaeI	CTAG	2 cut(s)	375, 717
MaeII	ACGT	2 cut(s)	222, 487
MaeIII	GTNAC	2 cut(s)	223, 719
MalI	GATC	5 cut(s)	190, 387, 501, 552, 693
MboI	GATC	5 cut(s)	188, 385, 499, 550, 691
MboII	GAAGA	3 cut(s)	410, 634, 641
MfeI	CAATTG	1 cut(s)	408
MflI	RGATCY	1 cut(s)	188
MhlI	GDGCHC	1 cut(s)	642
MluCI	AATT	1 cut(s)	408
MlyI	GAGTC	4 cut(s)	323, 353, 518, 622
MmeI	TCCRAC	2 cut(s)	131, 680
MnlI	CCTC	8 cut(s)	32, 69, 77, 121, 246, 298, 450, 706
MroI	TCCGGA	2 cut(s)	238, 440
MroXI	GAANNNNTTC	1 cut(s)	402
MseI	TTAA	1 cut(s)	560
MslI	CAYNNNNRTG	2 cut(s)	230, 726
MspA1I	CMGCKG	1 cut(s)	292
MspI	CCGG	3 cut(s)	239, 441, 617
MspR9I	CCNGG	1 cut(s)	696
MunI	CAATTG	1 cut(s)	408
MvaI	CCWGG	1 cut(s)	696
MwoI	GCNNNNNNNGC	1 cut(s)	743
NdeII	GATC	5 cut(s)	188, 385, 499, 550, 691
NlaIII	CATG	1 cut(s)	731
NlaIV	GGNNCC	2 cut(s)	12, 179
NmuCI	GTSAC	2 cut(s)	223, 719
OliI	CACNNNNGTG	1 cut(s)	230
PaeR7I	CTCGAG	1 cut(s)	530
PciSI	GCTCTTC	1 cut(s)	647
PdmI	GAANNNNTTC	1 cut(s)	402
PfeI	GAWTC	6 cut(s)	50, 139, 170, 197, 245, 437
PkrI	GCNGC	1 cut(s)	163
PleI	GAGTC	4 cut(s)	322, 353, 518, 621
PpsI	GAGTC	4 cut(s)	322, 353, 518, 621
Ppu21I	YACGTR	1 cut(s)	488
Psp6I	CCWGG	1 cut(s)	694
PspFI	CCCAGC	1 cut(s)	769
PspGI	CCWGG	1 cut(s)	694
PspN4I	GGNNCC	2 cut(s)	12, 179
PspPI	GGNCC	3 cut(s)	506, 683, 789
PspXI	VCTCGAGB	1 cut(s)	530
PstNI	CAGNNNCTG	1 cut(s)	173
PsuI	RGATCY	1 cut(s)	188
PvuII	CAGCTG	1 cut(s)	292
RseI	CAYNNNNRTG	2 cut(s)	230, 726
SapI	GCTCTTC	1 cut(s)	647
SaqAI	TTAA	1 cut(s)	560
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	5 cut(s)	188, 385, 499, 550, 691
Sau96I	GGNCC	3 cut(s)	506, 683, 789
SchI	GAGTC	4 cut(s)	323, 353, 518, 622
ScrFI	CCNGG	1 cut(s)	696
SduI	GDGCHC	1 cut(s)	642
SetI	ASST	9 cut(s)	113, 216, 225, 294, 427, 451, 490, 577, 761
SfaNI	GCATC	1 cut(s)	173
Sfr274I	CTCGAG	1 cut(s)	530
SinI	GGWCC	2 cut(s)	506, 683
SlaI	CTCGAG	1 cut(s)	530
SmiMI	CAYNNNNRTG	2 cut(s)	230, 726
SmlI	CTYRAG	1 cut(s)	530
SmoI	CTYRAG	1 cut(s)	530
Sse9I	AATT	1 cut(s)	408
SspMI	CTAG	2 cut(s)	375, 717
StyD4I	CCNGG	1 cut(s)	694
StyI	CCWWGG	1 cut(s)	192
TaiI	ACGT	2 cut(s)	225, 490
TaqI	TCGA	5 cut(s)	91, 362, 433, 531, 603
TasI	AATT	1 cut(s)	408
TfiI	GAWTC	6 cut(s)	50, 139, 170, 197, 245, 437
Tru1I	TTAA	1 cut(s)	560
Tru9I	TTAA	1 cut(s)	560
TscAI	CASTG	1 cut(s)	634
TseFI	GTSAC	2 cut(s)	223, 719
TseI	GCWGC	1 cut(s)	161
Tsp45I	GTSAC	2 cut(s)	223, 719
TspDTI	ATGAA	1 cut(s)	555
TspRI	CASTG	1 cut(s)	634
VpaK11BI	GGWCC	2 cut(s)	506, 683
XcmI	CCANNNNNNNNNTGG	1 cut(s)	759
XhoI	CTCGAG	1 cut(s)	530
XmnI	GAANNNNTTC	1 cut(s)	402
XspI	CTAG	2 cut(s)	375, 717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.