Rhomboid family
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G38510 AT5G38510 AT5G38510 |
| fragaria_vesca | FvH4_6g45321 FvH4_6g45321 FvH4_6g45321 |
| malus_domestica | MD09G1085700.v1.1 MD17G1074600.v1.1 |
| prunus_persica | Prupe.3G239300_v2.0.a1 |
| pyrus_communis | pycom09g01080 pycom09g01090 pycom17g07540 |
| rosa_chinensis | RchiOBHm_Chr2g0163101 |
| rosa_laevigata | RLG00000021373 |
| rosa_multiflora | Rmu_sc0003555.1_g000002 Rmu_sc0003984.1_g000017 |
| rosa_roxburghii | Rroxscaffold_2G00087550 |
| rosa_rugosa | Rorug02G0500400 Rorug02G0500500 Rorug02G0500500 Rorug02G0500500 Rorug02G0500500 |
| rosa_samantha | Rh2AG566800 Rh2BG579100 Rh2CG549000 Rh2DG589400 |
| rosa_wichuraiana | Rw2G046930 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 296, 547 |
| Acc36I | ACCTGC | 2 cut(s) | 1108, 3276 |
| AccB1I | GGYRCC | 1 cut(s) | 218 |
| AccI | GTMKAC | 1 cut(s) | 300 |
| AccII | CGCG | 2 cut(s) | 90, 138 |
| AciI | CCGC | 7 cut(s) | 136, 201, 246, 326, 483, 678, 3551 |
| AclWI | GGATC | 8 cut(s) | 792, 888, 1190, 2542, 3637, 3772, 3876, 3889 |
| AcoI | YGGCCR | 1 cut(s) | 871 |
| AcuI | CTGAAG | 8 cut(s) | 2009, 2314, 2910, 3038, 3066, 3147, 3287, 3756 |
| AfaI | GTAC | 7 cut(s) | 901, 1459, 1536, 1588, 2539, 2626, 2979 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 142, 215, 1624, 1913, 2070, 2097 |
| AflII | CTTAAG | 1 cut(s) | 2986 |
| AflIII | ACRYGT | 2 cut(s) | 1677, 3746 |
| AhlI | ACTAGT | 1 cut(s) | 3250 |
| AjiI | CACGTC | 1 cut(s) | 3598 |
| AjnI | CCWGG | 8 cut(s) | 358, 1349, 1966, 2090, 2198, 2523, 3877, 3918 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 378, 410, 2247, 2279 |
| Alw21I | GWGCWC | 1 cut(s) | 3140 |
| AlwI | GGATC | 8 cut(s) | 792, 888, 1190, 2542, 3637, 3772, 3876, 3889 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 806, 1652, 1757 |
| AoxI | GGCC | 6 cut(s) | 3, 871, 2072, 2333, 3462, 3516 |
| ApeKI | GCWGC | 9 cut(s) | 443, 1103, 2859, 2902, 3613, 3688, 3812, 3857, 3860 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2095, 2127 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 3464 |
| AspA2I | CCTAGG | 1 cut(s) | 2509 |
| AspLEI | GCGC | 1 cut(s) | 90 |
| AspS9I | GGNCC | 5 cut(s) | 398, 1218, 2072, 2366, 3407 |
| AsuC2I | CCSGG | 2 cut(s) | 85, 426 |
| AsuHPI | GGTGA | 7 cut(s) | 106, 692, 1007, 1556, 2669, 2681, 3119 |
| AsuII | TTCGAA | 1 cut(s) | 689 |
| AvaII | GGWCC | 4 cut(s) | 398, 1218, 2366, 3407 |
| AvrII | CCTAGG | 1 cut(s) | 2509 |
| AxyI | CCTNAGG | 1 cut(s) | 2144 |
| BalI | TGGCCA | 1 cut(s) | 873 |
| BamHI | GGATCC | 1 cut(s) | 3881 |
| BanI | GGYRCC | 1 cut(s) | 218 |
| BanII | GRGCYC | 1 cut(s) | 2033 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 829, 861, 1168, 1200 |
| BbsI | GAAGAC | 4 cut(s) | 581, 642, 745, 3275 |
| Bbv12I | GWGCWC | 1 cut(s) | 3140 |
| BbvCI | CCTCAGC | 2 cut(s) | 3513, 3603 |
| BbvI | GCAGC | 9 cut(s) | 455, 1090, 2846, 2889, 3625, 3700, 3824, 3844, 3872 |
| BccI | CCATC | 8 cut(s) | 835, 884, 1391, 2026, 2083, 2344, 2522, 3673 |
| BceAI | ACGGC | 2 cut(s) | 206, 2230 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 2758, 2792, 3602, 3636 |
| BciT130I | CCWGG | 8 cut(s) | 360, 1351, 1968, 2092, 2200, 2525, 3879, 3920 |
| BciVI | GTATCC | 1 cut(s) | 1335 |
| BclI | TGATCA | 2 cut(s) | 3259, 3673 |
| BcnI | CCSGG | 2 cut(s) | 85, 426 |
| BcuI | ACTAGT | 1 cut(s) | 3250 |
| BfmI | CTRYAG | 8 cut(s) | 441, 1644, 2170, 2994, 3283, 3686, 3810, 3858 |
| BfrI | CTTAAG | 1 cut(s) | 2986 |
| BfuAI | ACCTGC | 2 cut(s) | 1108, 3276 |
| BfuI | GTATCC | 1 cut(s) | 1335 |
| BglII | AGATCT | 2 cut(s) | 532, 1483 |
| BlnI | CCTAGG | 1 cut(s) | 2509 |
| BmcAI | AGTACT | 2 cut(s) | 901, 1459 |
| Bme18I | GGWCC | 4 cut(s) | 398, 1218, 2366, 3407 |
| BmgBI | CACGTC | 1 cut(s) | 3598 |
| BmgT120I | GGNCC | 5 cut(s) | 398, 1218, 2072, 2366, 3407 |
| BmiI | GGNNCC | 7 cut(s) | 220, 657, 1734, 2367, 3120, 3408, 3883 |
| BmrI | ACTGGG | 4 cut(s) | 172, 588, 1601, 1975 |
| BmsI | GCATC | 9 cut(s) | 39, 748, 956, 1676, 1786, 2464, 2871, 3469, 3499 |
| BmuI | ACTGGG | 4 cut(s) | 172, 588, 1601, 1975 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1249 |
| BpiI | GAAGAC | 4 cut(s) | 581, 642, 745, 3275 |
| BplI | GAGNNNNNCTC | 8 cut(s) | 101, 133, 134, 166, 519, 551, 2020, 2052 |
| BpmI | CTGGAG | 4 cut(s) | 1571, 1984, 2507, 2585 |
| Bpu10I | CCTNAGC | 2 cut(s) | 3513, 3603 |
| Bpu14I | TTCGAA | 1 cut(s) | 689 |
| BpuEI | CTTGAG | 2 cut(s) | 521, 2140 |
| BpuMI | CCSGG | 2 cut(s) | 85, 426 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1323, 2430 |
| BsaI | GGTCTC | 2 cut(s) | 32, 316 |
| BsaJI | CCNNGG | 7 cut(s) | 42, 1167, 2064, 2090, 2132, 2509, 3918 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1282, 1312, 3293, 3323 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 142, 215, 1624, 1913, 2070, 2097 |
| Bse1I | ACTGG | 8 cut(s) | 178, 594, 659, 1607, 1981, 2602, 3034, 3400 |
| Bse21I | CCTNAGG | 1 cut(s) | 2144 |
| Bse3DI | GCAATG | 1 cut(s) | 491 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1323, 2430 |
| BseBI | CCWGG | 8 cut(s) | 360, 1351, 1968, 2092, 2200, 2525, 3879, 3920 |
| BseDI | CCNNGG | 7 cut(s) | 42, 1167, 2064, 2090, 2132, 2509, 3918 |
| BseJI | GATNNNNATC | 2 cut(s) | 1323, 2430 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 142, 215, 1624, 1913, 2070, 2097 |
| BseMI | GCAATG | 1 cut(s) | 491 |
| BseNI | ACTGG | 8 cut(s) | 178, 594, 659, 1607, 1981, 2602, 3034, 3400 |
| BseRI | GAGGAG | 4 cut(s) | 158, 543, 633, 2025 |
| BseXI | GCAGC | 9 cut(s) | 455, 1090, 2846, 2889, 3625, 3700, 3824, 3844, 3872 |
| BseYI | CCCAGC | 2 cut(s) | 1773, 2870 |
| BsgI | GTGCAG | 2 cut(s) | 1938, 3632 |
| Bsh1236I | CGCG | 2 cut(s) | 90, 138 |
| BshFI | GGCC | 6 cut(s) | 5, 873, 2074, 2335, 3464, 3518 |
| BshNI | GGYRCC | 1 cut(s) | 218 |
| BsiHKAI | GWGCWC | 1 cut(s) | 3140 |
| BsiSI | CCGG | 3 cut(s) | 85, 209, 426 |
| BslFI | GGGAC | 7 cut(s) | 1303, 1575, 2124, 2151, 2256, 2379, 2451 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 142, 215, 1624, 1913, 2070, 2097 |
| BsmBI | CGTCTC | 1 cut(s) | 2816 |
| BsmFI | GGGAC | 7 cut(s) | 1303, 1575, 2124, 2151, 2256, 2379, 2451 |
| BsmI | GAATGC | 1 cut(s) | 1923 |
| BsnI | GGCC | 6 cut(s) | 5, 873, 2074, 2335, 3464, 3518 |
| Bso31I | GGTCTC | 2 cut(s) | 32, 316 |
| Bsp119I | TTCGAA | 1 cut(s) | 689 |
| Bsp1286I | GDGCHC | 2 cut(s) | 2033, 3140 |
| Bsp1407I | TGTACA | 1 cut(s) | 2537 |
| Bsp19I | CCATGG | 1 cut(s) | 2064 |
| BspACI | CCGC | 7 cut(s) | 136, 201, 246, 326, 483, 678, 3551 |
| BspANI | GGCC | 6 cut(s) | 5, 873, 2074, 2335, 3464, 3518 |
| BspFNI | CGCG | 2 cut(s) | 90, 138 |
| BspHI | TCATGA | 4 cut(s) | 460, 925, 3256, 3456 |
| BspLI | GGNNCC | 7 cut(s) | 220, 657, 1734, 2367, 3120, 3408, 3883 |
| BspMAI | CTGCAG | 7 cut(s) | 445, 2174, 2998, 3287, 3690, 3814, 3862 |
| BspMI | ACCTGC | 2 cut(s) | 1108, 3276 |
| BspPI | GGATC | 8 cut(s) | 792, 888, 1190, 2542, 3637, 3772, 3876, 3889 |
| BspQI | GCTCTTC | 2 cut(s) | 2145, 2250 |
| BspT104I | TTCGAA | 1 cut(s) | 689 |
| BspT107I | GGYRCC | 1 cut(s) | 218 |
| BspTI | CTTAAG | 1 cut(s) | 2986 |
| BspTNI | GGTCTC | 2 cut(s) | 32, 316 |
| BsrDI | GCAATG | 1 cut(s) | 491 |
| BsrGI | TGTACA | 1 cut(s) | 2537 |
| BsrI | ACTGG | 8 cut(s) | 178, 594, 659, 1607, 1981, 2602, 3034, 3400 |
| BssECI | CCNNGG | 7 cut(s) | 42, 1167, 2064, 2090, 2132, 2509, 3918 |
| BssT1I | CCWWGG | 3 cut(s) | 1167, 2064, 2509 |
| Bst2UI | CCWGG | 8 cut(s) | 360, 1351, 1968, 2092, 2200, 2525, 3879, 3920 |
| Bst4CI | ACNGT | 9 cut(s) | 850, 1294, 1462, 2537, 2636, 2730, 3309, 3732, 3834 |
| Bst6I | CTCTTC | 8 cut(s) | 564, 705, 1562, 1851, 2145, 2250, 3054, 3749 |
| BstAFI | CTTAAG | 1 cut(s) | 2986 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2944 |
| BstAUI | TGTACA | 1 cut(s) | 2537 |
| BstBI | TTCGAA | 1 cut(s) | 689 |
| BstC8I | GCNNGC | 3 cut(s) | 792, 1921, 3618 |
| BstDSI | CCRYGG | 1 cut(s) | 2064 |
| BstFNI | CGCG | 2 cut(s) | 90, 138 |
| BstHHI | GCGC | 1 cut(s) | 90 |
| BstNI | CCWGG | 8 cut(s) | 360, 1351, 1968, 2092, 2200, 2525, 3879, 3920 |
| BstNSI | RCATGY | 3 cut(s) | 794, 1681, 3750 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1249 |
| BstSFI | CTRYAG | 8 cut(s) | 441, 1644, 2170, 2994, 3283, 3686, 3810, 3858 |
| BstUI | CGCG | 2 cut(s) | 90, 138 |
| BstV1I | GCAGC | 9 cut(s) | 455, 1090, 2846, 2889, 3625, 3700, 3824, 3844, 3872 |
| BstV2I | GAAGAC | 4 cut(s) | 581, 642, 745, 3275 |
| BstX2I | RGATCY | 7 cut(s) | 532, 784, 880, 1483, 2547, 3777, 3881 |
| BstYI | RGATCY | 7 cut(s) | 532, 784, 880, 1483, 2547, 3777, 3881 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2144 |
| BsuI | GTATCC | 1 cut(s) | 1335 |
| BsuRI | GGCC | 6 cut(s) | 5, 873, 2074, 2335, 3464, 3518 |
| BtgI | CCRYGG | 1 cut(s) | 2064 |
| BtrI | CACGTC | 1 cut(s) | 3598 |
| BtsI | GCAGTG | 1 cut(s) | 1650 |
| BtsIMutI | CAGTG | 8 cut(s) | 105, 601, 936, 1650, 2641, 2872, 3041, 3728 |
| BveI | ACCTGC | 2 cut(s) | 1108, 3276 |
| Cac8I | GCNNGC | 3 cut(s) | 792, 1921, 3618 |
| CaiI | CAGNNNCTG | 3 cut(s) | 806, 1652, 1757 |
| CciI | TCATGA | 4 cut(s) | 460, 925, 3256, 3456 |
| CfoI | GCGC | 1 cut(s) | 90 |
| Cfr13I | GGNCC | 5 cut(s) | 398, 1218, 2072, 2366, 3407 |
| CseI | GACGC | 1 cut(s) | 2833 |
| Csp6I | GTAC | 7 cut(s) | 900, 1458, 1535, 1587, 2538, 2625, 2978 |
| CviQI | GTAC | 7 cut(s) | 900, 1458, 1535, 1587, 2538, 2625, 2978 |
| DraI | TTTAAA | 2 cut(s) | 2763, 3217 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 296, 547 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 296, 547 |
| EaeI | YGGCCR | 1 cut(s) | 871 |
| Eam1104I | CTCTTC | 8 cut(s) | 564, 705, 1562, 1851, 2145, 2250, 3054, 3749 |
| EarI | CTCTTC | 8 cut(s) | 564, 705, 1562, 1851, 2145, 2250, 3054, 3749 |
| EciI | GGCGGA | 2 cut(s) | 190, 3566 |
| Eco130I | CCWWGG | 3 cut(s) | 1167, 2064, 2509 |
| Eco147I | AGGCCT | 1 cut(s) | 3464 |
| Eco24I | GRGCYC | 1 cut(s) | 2033 |
| Eco31I | GGTCTC | 2 cut(s) | 32, 316 |
| Eco32I | GATATC | 1 cut(s) | 2788 |
| Eco47I | GGWCC | 4 cut(s) | 398, 1218, 2366, 3407 |
| Eco57I | CTGAAG | 8 cut(s) | 2009, 2314, 2910, 3038, 3066, 3147, 3287, 3756 |
| Eco81I | CCTNAGG | 1 cut(s) | 2144 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2366 |
| EcoRI | GAATTC | 1 cut(s) | 1359 |
| EcoRII | CCWGG | 8 cut(s) | 358, 1349, 1966, 2090, 2198, 2523, 3877, 3918 |
| EcoRV | GATATC | 1 cut(s) | 2788 |
| EcoT14I | CCWWGG | 3 cut(s) | 1167, 2064, 2509 |
| EcoT22I | ATGCAT | 1 cut(s) | 2949 |
| EcoT38I | GRGCYC | 1 cut(s) | 2033 |
| ErhI | CCWWGG | 3 cut(s) | 1167, 2064, 2509 |
| Esp3I | CGTCTC | 1 cut(s) | 2816 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 1848, 1880, 3011, 3043, 3051, 3083, 3810, 3842 |
| FaqI | GGGAC | 7 cut(s) | 1303, 1575, 2124, 2151, 2256, 2379, 2451 |
| FauNDI | CATATG | 1 cut(s) | 1993 |
| FbaI | TGATCA | 2 cut(s) | 3259, 3673 |
| FblI | GTMKAC | 1 cut(s) | 300 |
| FriOI | GRGCYC | 1 cut(s) | 2033 |
| GlaI | GCGC | 1 cut(s) | 89 |
| GsaI | CCCAGC | 2 cut(s) | 1777, 2874 |
| GsuI | CTGGAG | 4 cut(s) | 1571, 1984, 2507, 2585 |
| HaeIII | GGCC | 6 cut(s) | 5, 873, 2074, 2335, 3464, 3518 |
| HapII | CCGG | 3 cut(s) | 85, 209, 426 |
| HgaI | GACGC | 1 cut(s) | 2833 |
| HhaI | GCGC | 1 cut(s) | 90 |
| Hin6I | GCGC | 1 cut(s) | 88 |
| HinP1I | GCGC | 1 cut(s) | 88 |
| HincII | GTYRAC | 3 cut(s) | 301, 1579, 1612 |
| HindII | GTYRAC | 3 cut(s) | 301, 1579, 1612 |
| HindIII | AAGCTT | 2 cut(s) | 2207, 3652 |
| HpaI | GTTAAC | 2 cut(s) | 1579, 1612 |
| HpaII | CCGG | 3 cut(s) | 85, 209, 426 |
| HphI | GGTGA | 7 cut(s) | 106, 692, 1007, 1556, 2669, 2681, 3119 |
| Hpy99I | CGWCG | 7 cut(s) | 23, 143, 260, 284, 293, 296, 305 |
| HpyCH4III | ACNGT | 9 cut(s) | 850, 1294, 1462, 2537, 2636, 2730, 3309, 3732, 3834 |
| HpyCH4IV | ACGT | 5 cut(s) | 548, 1492, 2494, 3295, 3597 |
| HpySE526I | ACGT | 5 cut(s) | 548, 1492, 2494, 3295, 3597 |
| HspAI | GCGC | 1 cut(s) | 88 |
| Ksp22I | TGATCA | 2 cut(s) | 3259, 3673 |
| KspAI | GTTAAC | 2 cut(s) | 1579, 1612 |
| LguI | GCTCTTC | 2 cut(s) | 2145, 2250 |
| LmnI | GCTCC | 5 cut(s) | 86, 166, 1453, 1738, 3124 |
| Lsp1109I | GCAGC | 9 cut(s) | 455, 1090, 2846, 2889, 3625, 3700, 3824, 3844, 3872 |
| LweI | GCATC | 9 cut(s) | 39, 748, 956, 1676, 1786, 2464, 2871, 3469, 3499 |
| MaeII | ACGT | 5 cut(s) | 548, 1492, 2494, 3295, 3597 |
| MfeI | CAATTG | 1 cut(s) | 1937 |
| MflI | RGATCY | 7 cut(s) | 532, 784, 880, 1483, 2547, 3777, 3881 |
| MhlI | GDGCHC | 2 cut(s) | 2033, 3140 |
| MlsI | TGGCCA | 1 cut(s) | 873 |
| MluNI | TGGCCA | 1 cut(s) | 873 |
| MmeI | TCCRAC | 4 cut(s) | 177, 399, 834, 3434 |
| Mox20I | TGGCCA | 1 cut(s) | 873 |
| Mph1103I | ATGCAT | 1 cut(s) | 2949 |
| MroXI | GAANNNNTTC | 1 cut(s) | 3464 |
| MscI | TGGCCA | 1 cut(s) | 873 |
| MslI | CAYNNNNRTG | 6 cut(s) | 726, 1226, 2418, 2583, 3105, 3580 |
| Msp20I | TGGCCA | 1 cut(s) | 873 |
| MspA1I | CMGCKG | 3 cut(s) | 1747, 2859, 3616 |
| MspCI | CTTAAG | 1 cut(s) | 2986 |
| MspI | CCGG | 3 cut(s) | 85, 209, 426 |
| MunI | CAATTG | 1 cut(s) | 1937 |
| Mva1269I | GAATGC | 1 cut(s) | 1923 |
| MvaI | CCWGG | 8 cut(s) | 360, 1351, 1968, 2092, 2200, 2525, 3879, 3920 |
| MvnI | CGCG | 2 cut(s) | 90, 138 |
| NciI | CCSGG | 2 cut(s) | 85, 426 |
| NcoI | CCATGG | 1 cut(s) | 2064 |
| NdeI | CATATG | 1 cut(s) | 1993 |
| NlaIV | GGNNCC | 7 cut(s) | 220, 657, 1734, 2367, 3120, 3408, 3883 |
| NmeAIII | GCCGAG | 1 cut(s) | 229 |
| NmuCI | GTSAC | 5 cut(s) | 995, 1430, 1493, 2636, 3724 |
| NsiI | ATGCAT | 1 cut(s) | 2949 |
| NspI | RCATGY | 3 cut(s) | 794, 1681, 3750 |
| NspV | TTCGAA | 1 cut(s) | 689 |
| PaeI | GCATGC | 1 cut(s) | 794 |
| PagI | TCATGA | 4 cut(s) | 460, 925, 3256, 3456 |
| PceI | AGGCCT | 1 cut(s) | 3464 |
| PciI | ACATGT | 2 cut(s) | 1677, 3746 |
| PciSI | GCTCTTC | 2 cut(s) | 2145, 2250 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 201, 285, 288, 297, 341 |
| PctI | GAATGC | 1 cut(s) | 1923 |
| PdmI | GAANNNNTTC | 1 cut(s) | 3464 |
| PflFI | GACNNNGTC | 1 cut(s) | 296 |
| PfoI | TCCNGGA | 2 cut(s) | 2198, 2523 |
| PpuMI | RGGWCCY | 1 cut(s) | 2366 |
| PscI | ACATGT | 2 cut(s) | 1677, 3746 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1249 |
| Psp5II | RGGWCCY | 1 cut(s) | 2366 |
| Psp6I | CCWGG | 8 cut(s) | 358, 1349, 1966, 2090, 2198, 2523, 3877, 3918 |
| PspFI | CCCAGC | 2 cut(s) | 1773, 2870 |
| PspGI | CCWGG | 8 cut(s) | 358, 1349, 1966, 2090, 2198, 2523, 3877, 3918 |
| PspN4I | GGNNCC | 7 cut(s) | 220, 657, 1734, 2367, 3120, 3408, 3883 |
| PspPI | GGNCC | 5 cut(s) | 398, 1218, 2072, 2366, 3407 |
| PspPPI | RGGWCCY | 1 cut(s) | 2366 |
| PstI | CTGCAG | 7 cut(s) | 445, 2174, 2998, 3287, 3690, 3814, 3862 |
| PstNI | CAGNNNCTG | 3 cut(s) | 806, 1652, 1757 |
| PsuI | RGATCY | 7 cut(s) | 532, 784, 880, 1483, 2547, 3777, 3881 |
| PsyI | GACNNNGTC | 1 cut(s) | 296 |
| PvuII | CAGCTG | 3 cut(s) | 1747, 2859, 3616 |
| RsaI | GTAC | 7 cut(s) | 901, 1459, 1536, 1588, 2539, 2626, 2979 |
| RsaNI | GTAC | 7 cut(s) | 900, 1458, 1535, 1587, 2538, 2625, 2978 |
| RseI | CAYNNNNRTG | 6 cut(s) | 726, 1226, 2418, 2583, 3105, 3580 |
| SalI | GTCGAC | 1 cut(s) | 299 |
| SapI | GCTCTTC | 2 cut(s) | 2145, 2250 |
| Sau96I | GGNCC | 5 cut(s) | 398, 1218, 2072, 2366, 3407 |
| SbfI | CCTGCAGG | 1 cut(s) | 2174 |
| ScaI | AGTACT | 2 cut(s) | 901, 1459 |
| SdaI | CCTGCAGG | 1 cut(s) | 2174 |
| SduI | GDGCHC | 2 cut(s) | 2033, 3140 |
| SfaNI | GCATC | 9 cut(s) | 39, 748, 956, 1676, 1786, 2464, 2871, 3469, 3499 |
| SfcI | CTRYAG | 8 cut(s) | 441, 1644, 2170, 2994, 3283, 3686, 3810, 3858 |
| SfuI | TTCGAA | 1 cut(s) | 689 |
| SinI | GGWCC | 4 cut(s) | 398, 1218, 2366, 3407 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 726, 1226, 2418, 2583, 3105, 3580 |
| SmlI | CTYRAG | 3 cut(s) | 536, 2119, 2986 |
| SmoI | CTYRAG | 3 cut(s) | 536, 2119, 2986 |
| SpeI | ACTAGT | 1 cut(s) | 3250 |
| SphI | GCATGC | 1 cut(s) | 794 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 2174 |
| SseBI | AGGCCT | 1 cut(s) | 3464 |
| SsiI | CCGC | 7 cut(s) | 136, 201, 246, 326, 483, 678, 3551 |
| SspI | AATATT | 1 cut(s) | 1192 |
| StuI | AGGCCT | 1 cut(s) | 3464 |
| StyI | CCWWGG | 3 cut(s) | 1167, 2064, 2509 |
| TaaI | ACNGT | 9 cut(s) | 850, 1294, 1462, 2537, 2636, 2730, 3309, 3732, 3834 |
| TaiI | ACGT | 5 cut(s) | 551, 1495, 2497, 3298, 3600 |
| TaqI | TCGA | 5 cut(s) | 300, 689, 2841, 3622, 3738 |
| TaqII | GACCGA | 2 cut(s) | 56, 3072 |
| TatI | WGTACW | 5 cut(s) | 899, 1457, 1534, 2537, 2624 |
| TauI | GCSGC | 1 cut(s) | 249 |
| TscAI | CASTG | 8 cut(s) | 112, 601, 943, 1657, 2641, 2872, 3041, 3735 |
| TseFI | GTSAC | 5 cut(s) | 995, 1430, 1493, 2636, 3724 |
| TseI | GCWGC | 9 cut(s) | 443, 1103, 2859, 2902, 3613, 3688, 3812, 3857, 3860 |
| Tsp45I | GTSAC | 5 cut(s) | 995, 1430, 1493, 2636, 3724 |
| TspGWI | ACGGA | 3 cut(s) | 109, 309, 1607 |
| TspRI | CASTG | 8 cut(s) | 112, 601, 943, 1657, 2641, 2872, 3041, 3735 |
| Tth111I | GACNNNGTC | 1 cut(s) | 296 |
| Vha464I | CTTAAG | 1 cut(s) | 2986 |
| VpaK11BI | GGWCC | 4 cut(s) | 398, 1218, 2366, 3407 |
| XbaI | TCTAGA | 1 cut(s) | 1153 |
| XceI | RCATGY | 3 cut(s) | 794, 1681, 3750 |
| XmaJI | CCTAGG | 1 cut(s) | 2509 |
| XmiI | GTMKAC | 1 cut(s) | 300 |
| XmnI | GAANNNNTTC | 1 cut(s) | 3464 |
| ZrmI | AGTACT | 2 cut(s) | 901, 1459 |
| Zsp2I | ATGCAT | 1 cut(s) | 2949 |