Rhomboid family
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G38510 AT5G38510 AT5G38510 |
| fragaria_vesca | FvH4_6g45321 FvH4_6g45321 FvH4_6g45321 |
| malus_domestica | MD09G1085700.v1.1 MD17G1074600.v1.1 |
| prunus_persica | Prupe.3G239300_v2.0.a1 |
| pyrus_communis | pycom09g01080 pycom09g01090 pycom17g07540 |
| rosa_chinensis | RchiOBHm_Chr2g0163101 |
| rosa_laevigata | RLG00000021373 |
| rosa_multiflora | Rmu_sc0003555.1_g000002 Rmu_sc0003984.1_g000017 |
| rosa_roxburghii | Rroxscaffold_2G00087550 |
| rosa_rugosa | Rorug02G0500400 Rorug02G0500500 Rorug02G0500500 Rorug02G0500500 Rorug02G0500500 |
| rosa_samantha | Rh2AG566800 Rh2BG579100 Rh2CG549000 Rh2DG589400 |
| rosa_wichuraiana | Rw2G046930 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 41 |
| AclWI | GGATC | 1 cut(s) | 200 |
| AcoI | YGGCCR | 1 cut(s) | 166 |
| AgsI | TTSAA | 2 cut(s) | 134, 159 |
| AluBI | AGCT | 2 cut(s) | 36, 255 |
| AluI | AGCT | 2 cut(s) | 36, 255 |
| AlwI | GGATC | 1 cut(s) | 200 |
| AoxI | GGCC | 1 cut(s) | 166 |
| ApeKI | GCWGC | 1 cut(s) | 86 |
| AspS9I | GGNCC | 2 cut(s) | 56, 275 |
| AvaII | GGWCC | 2 cut(s) | 56, 275 |
| BalI | TGGCCA | 1 cut(s) | 168 |
| BbvI | GCAGC | 1 cut(s) | 98 |
| BisI | GCNGC | 1 cut(s) | 87 |
| BlsI | GCNGC | 1 cut(s) | 88 |
| Bme18I | GGWCC | 2 cut(s) | 56, 275 |
| BmgT120I | GGNCC | 2 cut(s) | 56, 275 |
| BmiI | GGNNCC | 1 cut(s) | 276 |
| BmsI | GCATC | 3 cut(s) | 133, 155, 305 |
| Bse1I | ACTGG | 1 cut(s) | 141 |
| Bse3DI | GCAATG | 1 cut(s) | 291 |
| BseGI | GGATG | 1 cut(s) | 145 |
| BseMI | GCAATG | 1 cut(s) | 291 |
| BseNI | ACTGG | 1 cut(s) | 141 |
| BseXI | GCAGC | 1 cut(s) | 98 |
| Bsh1236I | CGCG | 1 cut(s) | 41 |
| BshFI | GGCC | 1 cut(s) | 168 |
| BslFI | GGGAC | 1 cut(s) | 288 |
| BsmFI | GGGAC | 1 cut(s) | 288 |
| BsnI | GGCC | 1 cut(s) | 168 |
| Bsp143I | GATC | 1 cut(s) | 205 |
| BspANI | GGCC | 1 cut(s) | 168 |
| BspFNI | CGCG | 1 cut(s) | 41 |
| BspLI | GGNNCC | 1 cut(s) | 276 |
| BspPI | GGATC | 1 cut(s) | 200 |
| BsrDI | GCAATG | 1 cut(s) | 291 |
| BsrI | ACTGG | 1 cut(s) | 141 |
| BssMI | GATC | 1 cut(s) | 205 |
| Bst4CI | ACNGT | 1 cut(s) | 222 |
| Bst6I | CTCTTC | 1 cut(s) | 135 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 92 |
| BstDEI | CTNAG | 1 cut(s) | 32 |
| BstF5I | GGATG | 1 cut(s) | 145 |
| BstFNI | CGCG | 1 cut(s) | 41 |
| BstKTI | GATC | 1 cut(s) | 208 |
| BstMBI | GATC | 1 cut(s) | 205 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 92, 101 |
| BstNSI | RCATGY | 1 cut(s) | 123 |
| BstUI | CGCG | 1 cut(s) | 41 |
| BstV1I | GCAGC | 1 cut(s) | 98 |
| BstX2I | RGATCY | 1 cut(s) | 205 |
| BstYI | RGATCY | 1 cut(s) | 205 |
| BsuRI | GGCC | 1 cut(s) | 168 |
| BtsCI | GGATG | 1 cut(s) | 145 |
| BtsIMutI | CAGTG | 1 cut(s) | 218 |
| Cfr13I | GGNCC | 2 cut(s) | 56, 275 |
| CviAII | CATG | 1 cut(s) | 120 |
| CviJI | RGCY | 4 cut(s) | 14, 36, 168, 255 |
| CviKI_1 | RGCY | 4 cut(s) | 14, 36, 168, 255 |
| DdeI | CTNAG | 1 cut(s) | 32 |
| DpnI | GATC | 1 cut(s) | 207 |
| DpnII | GATC | 1 cut(s) | 205 |
| EaeI | YGGCCR | 1 cut(s) | 166 |
| Eam1104I | CTCTTC | 1 cut(s) | 135 |
| EarI | CTCTTC | 1 cut(s) | 135 |
| Eco47I | GGWCC | 2 cut(s) | 56, 275 |
| EcoO109I | RGGNCCY | 1 cut(s) | 275 |
| EcoT22I | ATGCAT | 1 cut(s) | 148 |
| FaeI | CATG | 1 cut(s) | 123 |
| FaiI | YATR | 5 cut(s) | 20, 106, 108, 121, 201 |
| FaqI | GGGAC | 1 cut(s) | 288 |
| FatI | CATG | 1 cut(s) | 119 |
| FauNDI | CATATG | 1 cut(s) | 106 |
| Fnu4HI | GCNGC | 1 cut(s) | 87 |
| FokI | GGATG | 1 cut(s) | 152 |
| Fsp4HI | GCNGC | 1 cut(s) | 87 |
| GluI | GCNGC | 1 cut(s) | 87 |
| HaeIII | GGCC | 1 cut(s) | 168 |
| Hin1II | CATG | 1 cut(s) | 123 |
| HinfI | GANTC | 1 cut(s) | 180 |
| Hpy188I | TCNGA | 1 cut(s) | 301 |
| HpyAV | CCTTC | 1 cut(s) | 170 |
| HpyCH4III | ACNGT | 1 cut(s) | 222 |
| HpyCH4V | TGCA | 5 cut(s) | 95, 146, 203, 213, 296 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 92, 101 |
| HpyF3I | CTNAG | 1 cut(s) | 32 |
| Hsp92II | CATG | 1 cut(s) | 123 |
| Kzo9I | GATC | 1 cut(s) | 205 |
| LmnI | GCTCC | 1 cut(s) | 83 |
| LpnPI | CCDG | 3 cut(s) | 81, 122, 296 |
| Lsp1109I | GCAGC | 1 cut(s) | 98 |
| LweI | GCATC | 3 cut(s) | 133, 155, 305 |
| MalI | GATC | 1 cut(s) | 207 |
| MboI | GATC | 1 cut(s) | 205 |
| MboII | GAAGA | 3 cut(s) | 122, 144, 147 |
| MflI | RGATCY | 1 cut(s) | 205 |
| MlsI | TGGCCA | 1 cut(s) | 168 |
| MluNI | TGGCCA | 1 cut(s) | 168 |
| MnlI | CCTC | 2 cut(s) | 166, 288 |
| Mox20I | TGGCCA | 1 cut(s) | 168 |
| Mph1103I | ATGCAT | 1 cut(s) | 148 |
| MscI | TGGCCA | 1 cut(s) | 168 |
| MseI | TTAA | 1 cut(s) | 251 |
| Msp20I | TGGCCA | 1 cut(s) | 168 |
| MvnI | CGCG | 1 cut(s) | 41 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 92, 101 |
| NdeI | CATATG | 1 cut(s) | 106 |
| NdeII | GATC | 1 cut(s) | 205 |
| NlaIII | CATG | 1 cut(s) | 123 |
| NlaIV | GGNNCC | 1 cut(s) | 276 |
| NsiI | ATGCAT | 1 cut(s) | 148 |
| NspI | RCATGY | 1 cut(s) | 123 |
| PfeI | GAWTC | 1 cut(s) | 180 |
| PkrI | GCNGC | 1 cut(s) | 88 |
| PpuMI | RGGWCCY | 1 cut(s) | 275 |
| Psp5II | RGGWCCY | 1 cut(s) | 275 |
| PspN4I | GGNNCC | 1 cut(s) | 276 |
| PspPI | GGNCC | 2 cut(s) | 56, 275 |
| PspPPI | RGGWCCY | 1 cut(s) | 275 |
| PsuI | RGATCY | 1 cut(s) | 205 |
| SaqAI | TTAA | 1 cut(s) | 251 |
| SatI | GCNGC | 1 cut(s) | 87 |
| Sau3AI | GATC | 1 cut(s) | 205 |
| Sau96I | GGNCC | 2 cut(s) | 56, 275 |
| SetI | ASST | 3 cut(s) | 38, 257, 280 |
| SfaNI | GCATC | 3 cut(s) | 133, 155, 305 |
| SinI | GGWCC | 2 cut(s) | 56, 275 |
| TaaI | ACNGT | 1 cut(s) | 222 |
| TaqII | GACCGA | 1 cut(s) | 44 |
| TfiI | GAWTC | 1 cut(s) | 180 |
| Tru1I | TTAA | 1 cut(s) | 251 |
| Tru9I | TTAA | 1 cut(s) | 251 |
| TscAI | CASTG | 1 cut(s) | 225 |
| TseI | GCWGC | 1 cut(s) | 86 |
| TspGWI | ACGGA | 1 cut(s) | 300 |
| TspRI | CASTG | 1 cut(s) | 225 |
| VpaK11BI | GGWCC | 2 cut(s) | 56, 275 |
| XceI | RCATGY | 1 cut(s) | 123 |
| Zsp2I | ATGCAT | 1 cut(s) | 148 |