Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006042

Physical Location & Seq

Genomic Coordinates Forward (+)

23932985 .. 23936979

Gene Structure 3995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G248900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGGTTCTGTTTGTTGTTGTTTGAATGCTGAGGATTTTGAAGACTATGTGAATCCAAACAGTTCTGCATATAGGAACTGTATCTGTCTTAGTTGCTTTATTGAGAACTTTCTAAATGTGTATACATCATTATTCAGAAGAGGAGAAGTGCATTCAATCCCATCATCCATTCAGGGGGCTGCATCAATGACGTCCTCAGCATCACTAGACAACTCTATATCTGACATGTATCGTTCTCCTCCAAGGCCCTTGCCTTATGATGCTGACCCCAGATACATCCGCTTGCAACGGGATGGGTTGATTTCTAGGCGTGAGAAAGGCTCAAGTCATTCTCATGAGGAGGCCGAACCTCTAAGAAGTGATACTGATGCAGATTCTGAATGTTTGAGTACAGGAGAAAAATGGAATGGGTCTGCTTGTGAAGATGGAGTAAAAGAACATCGTTCCAAGTCCTCAATGAAGTTCTCATCAGCAAAAGCTACAACCATAGTTGGGAACTTTTATATATCATCAGAAGACGAGGATGTCTGTCCAACATGTCTTGAAGAATATACTCCAGAAAATCCCAAAATAATGACAAAATGCTCTCATCATTTTCACCTTGGTTGTATATATGAGTGGATGGAGAGAAGTGAAAGCTGCCCTGTTTGTGGCAAGGTGATGGTATTCGATGAAACGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

228

Amino Acids

25.42

Weight (kDa)

4.95

Isoelectric Point (pI)

56.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38895 AT5G38895 AT5G38895
fragaria_vesca	FvH4_6g46360 FvH4_6g46360
malus_domestica	MD09G1074400.v1.1 MD17G1065800.v1.1
prunus_persica	Prupe.3G248900_v2.0.a1 Prupe.3G248900_v2.0.a1 Prupe.3G248900_v2.0.a1
pyrus_communis	pycom09g00150 pycom17g06610
rosa_chinensis	RchiOBHm_Chr2g0146111 RchiOBHm_Chr2g0164901
rosa_laevigata	RLG00000021495
rosa_multiflora	Rmu_sc0006207.1_g000009
rosa_roxburghii	Rroxscaffold_2G00086230
rosa_rugosa	Rorug02G0511100 Rorug02G0511200 Rorug02G0511200
rosa_samantha	Rh2AG579300 Rh2BG461500 Rh2BG590300 Rh2CG561000 Rh2DG470700 Rh2DG600700
rosa_wichuraiana	Rw2G048080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	524
AatII	GACGTC	1 cut(s)	194
AccI	GTMKAC	1 cut(s)	122
AciI	CCGC	1 cut(s)	280
AcyI	GRCGYC	1 cut(s)	191
AfaI	GTAC	1 cut(s)	391
AfiI	CCNNNNNNNGG	3 cut(s)	174, 492, 650
AflIII	ACRYGT	2 cut(s)	225, 536
AgsI	TTSAA	4 cut(s)	25, 41, 156, 545
AluBI	AGCT	2 cut(s)	479, 639
AluI	AGCT	2 cut(s)	479, 639
AlwNI	CAGNNNCTG	1 cut(s)	377
AoxI	GGCC	2 cut(s)	245, 342
ApeKI	GCWGC	2 cut(s)	179, 639
AspS9I	GGNCC	1 cut(s)	246
AsuHPI	GGTGA	2 cut(s)	590, 670
BbsI	GAAGAC	2 cut(s)	48, 522
BbvCI	CCTCAGC	2 cut(s)	30, 196
BbvI	GCAGC	2 cut(s)	166, 626
BccI	CCATC	5 cut(s)	169, 287, 419, 616, 655
BfaI	CTAG	2 cut(s)	206, 306
BisI	GCNGC	2 cut(s)	180, 640
BlsI	GCNGC	2 cut(s)	181, 641
BmgT120I	GGNCC	1 cut(s)	246
BmsI	GCATC	4 cut(s)	191, 209, 250, 358
BpiI	GAAGAC	2 cut(s)	48, 522
BplI	GAGNNNNNCTC	2 cut(s)	305, 337
BpmI	CTGGAG	1 cut(s)	540
Bpu10I	CCTNAGC	2 cut(s)	30, 196
BpuEI	CTTGAG	1 cut(s)	307
BsaHI	GRCGYC	1 cut(s)	191
BsaJI	CCNNGG	2 cut(s)	242, 601
Bsc4I	CCNNNNNNNGG	3 cut(s)	174, 492, 650
BseDI	CCNNGG	2 cut(s)	242, 601
BseGI	GGATG	5 cut(s)	164, 276, 298, 529, 627
BseLI	CCNNNNNNNGG	3 cut(s)	174, 492, 650
BseMII	CTCAG	2 cut(s)	21, 210
BseRI	GAGGAG	3 cut(s)	156, 228, 353
BseXI	GCAGC	2 cut(s)	166, 626
BshFI	GGCC	2 cut(s)	247, 344
BslI	CCNNNNNNNGG	3 cut(s)	174, 492, 650
BsmI	GAATGC	2 cut(s)	31, 151
BsnI	GGCC	2 cut(s)	247, 344
BspACI	CCGC	1 cut(s)	280
BspANI	GGCC	2 cut(s)	247, 344
BspCNI	CTCAG	2 cut(s)	22, 209
BspHI	TCATGA	1 cut(s)	334
BssECI	CCNNGG	2 cut(s)	242, 601
BssNAI	GTATAC	1 cut(s)	123
BssNI	GRCGYC	1 cut(s)	191
BssT1I	CCWWGG	2 cut(s)	242, 601
Bst1107I	GTATAC	1 cut(s)	123
Bst4CI	ACNGT	2 cut(s)	62, 80
Bst6I	CTCTTC	1 cut(s)	133
BstACI	GRCGYC	1 cut(s)	191
BstC8I	GCNNGC	1 cut(s)	284
BstDEI	CTNAG	4 cut(s)	30, 89, 196, 353
BstF5I	GGATG	5 cut(s)	164, 276, 298, 529, 627
BstNSI	RCATGY	2 cut(s)	229, 540
BstV1I	GCAGC	2 cut(s)	166, 626
BstV2I	GAAGAC	2 cut(s)	48, 522
BstZ17I	GTATAC	1 cut(s)	123
BsuRI	GGCC	2 cut(s)	247, 344
BtsCI	GGATG	5 cut(s)	164, 276, 298, 529, 627
Cac8I	GCNNGC	1 cut(s)	284
CaiI	CAGNNNCTG	1 cut(s)	377
CciI	TCATGA	1 cut(s)	334
Cfr13I	GGNCC	1 cut(s)	246
Csp6I	GTAC	1 cut(s)	390
CviAII	CATG	3 cut(s)	226, 335, 537
CviJI	RGCY	6 cut(s)	179, 247, 321, 344, 479, 639
CviKI_1	RGCY	6 cut(s)	179, 247, 321, 344, 479, 639
CviQI	GTAC	1 cut(s)	390
DdeI	CTNAG	4 cut(s)	30, 89, 196, 353
DrdI	GACNNNNNNGTC	1 cut(s)	524
DseDI	GACNNNNNNGTC	1 cut(s)	524
Eam1104I	CTCTTC	1 cut(s)	133
EarI	CTCTTC	1 cut(s)	133
Eco130I	CCWWGG	2 cut(s)	242, 601
EcoO109I	RGGNCCY	1 cut(s)	246
EcoT14I	CCWWGG	2 cut(s)	242, 601
ErhI	CCWWGG	2 cut(s)	242, 601
FaeI	CATG	3 cut(s)	229, 338, 540
FatI	CATG	3 cut(s)	225, 334, 536
FblI	GTMKAC	1 cut(s)	122
Fnu4HI	GCNGC	2 cut(s)	180, 640
FokI	GGATG	5 cut(s)	151, 263, 305, 536, 634
Fsp4HI	GCNGC	2 cut(s)	180, 640
FspBI	CTAG	2 cut(s)	206, 306
GluI	GCNGC	2 cut(s)	180, 640
GsuI	CTGGAG	1 cut(s)	540
HaeIII	GGCC	2 cut(s)	247, 344
Hin1I	GRCGYC	1 cut(s)	191
Hin1II	CATG	3 cut(s)	229, 338, 540
HinfI	GANTC	2 cut(s)	52, 374
HphI	GGTGA	2 cut(s)	590, 670
Hpy166II	GTNNAC	1 cut(s)	123
Hpy188I	TCNGA	4 cut(s)	137, 223, 379, 514
Hpy188III	TCNNGA	3 cut(s)	335, 542, 557
Hpy8I	GTNNAC	1 cut(s)	123
HpyCH4III	ACNGT	2 cut(s)	62, 80
HpyCH4IV	ACGT	1 cut(s)	191
HpyCH4V	TGCA	5 cut(s)	68, 151, 182, 286, 371
HpyF3I	CTNAG	4 cut(s)	30, 89, 196, 353
HpySE526I	ACGT	1 cut(s)	191
Hsp92I	GRCGYC	1 cut(s)	191
Hsp92II	CATG	3 cut(s)	229, 338, 540
LpnPI	CCDG	5 cut(s)	158, 283, 378, 570, 657
Lsp1109I	GCAGC	2 cut(s)	166, 626
LweI	GCATC	4 cut(s)	191, 209, 250, 358
MaeI	CTAG	2 cut(s)	206, 306
MaeII	ACGT	1 cut(s)	191
MboII	GAAGA	5 cut(s)	53, 150, 434, 527, 557
MmeI	TCCRAC	1 cut(s)	557
MnlI	CCTC	9 cut(s)	25, 134, 205, 249, 331, 334, 360, 463, 514
MseI	TTAA	1 cut(s)	682
MslI	CAYNNNNRTG	1 cut(s)	333
Mva1269I	GAATGC	2 cut(s)	31, 151
NlaIII	CATG	3 cut(s)	229, 338, 540
NspI	RCATGY	2 cut(s)	229, 540
PagI	TCATGA	1 cut(s)	334
PciI	ACATGT	2 cut(s)	225, 536
PctI	GAATGC	2 cut(s)	31, 151
PfeI	GAWTC	2 cut(s)	52, 374
PkrI	GCNGC	2 cut(s)	181, 641
PscI	ACATGT	2 cut(s)	225, 536
PspPI	GGNCC	1 cut(s)	246
PstNI	CAGNNNCTG	1 cut(s)	377
RsaI	GTAC	1 cut(s)	391
RsaNI	GTAC	1 cut(s)	390
RseI	CAYNNNNRTG	1 cut(s)	333
SaqAI	TTAA	1 cut(s)	682
SatI	GCNGC	2 cut(s)	180, 640
Sau96I	GGNCC	1 cut(s)	246
SetI	ASST	6 cut(s)	194, 352, 481, 603, 641, 660
SfaNI	GCATC	4 cut(s)	191, 209, 250, 358
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	1 cut(s)	322
SmoI	CTYRAG	1 cut(s)	322
SsiI	CCGC	1 cut(s)	280
SspMI	CTAG	2 cut(s)	206, 306
StyI	CCWWGG	2 cut(s)	242, 601
TaaI	ACNGT	2 cut(s)	62, 80
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	1 cut(s)	669
TatI	WGTACW	1 cut(s)	389
TfiI	GAWTC	2 cut(s)	52, 374
Tru1I	TTAA	1 cut(s)	682
Tru9I	TTAA	1 cut(s)	682
TseI	GCWGC	2 cut(s)	179, 639
TspDTI	ATGAA	1 cut(s)	473
XceI	RCATGY	2 cut(s)	229, 540
XmiI	GTMKAC	1 cut(s)	122
XspI	CTAG	2 cut(s)	206, 306
ZraI	GACGTC	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.