Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006042

Physical Location & Seq

Genomic Coordinates Reverse (-)

8456139 .. 8459924

Gene Structure 3786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00086230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGGCGCTGTCTGTTGTTGTTTGAATGCCGATGATTTTGAAGATTATGTGAATCCAAACAGTACTGCATTGAGGAACTGTCCGTGTCTTAGTTGCTTTGTTCAAAACTTTGTAAATGTGTATTCATCACTGTTCAGAAGAGGGGAACTACAGTCGCTCCCCTCATCCATTCAGGGGGCTGCATCAATGACTTCTGCAGCCTCACTTGATAGCTCTTTATCTGACATGTATCGCTCTCCTCCAAGGCCCTTGCCTTATGATGCTGACCCCAGATACATCCGTTTGCAGCGGGATGGATTGGTTTCTAGGCGTGAGAAAGGCACTAGTCATTCTCATGAGGAGACCGAACCTCTAAGAAGTGATACCGATGCAGATTCAGAATGTTTGAGTACAGGAGACAAATGGAATGGATCTACTTGTGAAGATGGATCAAAAGAACATCGTTCCAGGTCCTCGATGAAGTTGTCATCGGCAAAAGCAACAACTGGATTTGGGATCATTTATACATCTTCAGAAGAAGAGGATGTATGCCCAACATGTCTTGAGGAATATACTCCAGAAAACCCCAAAATAATGACAAAATGCTCTCATCATTATCATCTCGGTTGTATATATGAGTGGATGGAGAGAAGTGAAAGTTGTCCTGTTTGTGGCAAGGTCATGGCATTCAATGAAACGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

227

Amino Acids

25.23

Weight (kDa)

5.0

Isoelectric Point (pI)

65.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	172 - 217	2.7e-10	RING-H2 zinc finger domain
zf-ANAPC11	PF12861	175 - 224	8.6e-07	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-RING_2	PF13639	176 - 217	3e-11	Ring finger domain
zf-C3HC4_2	PF13923	177 - 217	2.1e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	177 - 215	1.3e-06	RING-type zinc-finger
zf-C3HC4	PF00097	177 - 217	1.4e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	177 - 219	6.9e-06	zinc-RING finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38895 AT5G38895 AT5G38895
fragaria_vesca	FvH4_6g46360 FvH4_6g46360
malus_domestica	MD09G1074400.v1.1 MD17G1065800.v1.1
prunus_persica	Prupe.3G248900_v2.0.a1 Prupe.3G248900_v2.0.a1 Prupe.3G248900_v2.0.a1
pyrus_communis	pycom09g00150 pycom17g06610
rosa_chinensis	RchiOBHm_Chr2g0146111 RchiOBHm_Chr2g0164901
rosa_laevigata	RLG00000021495
rosa_multiflora	Rmu_sc0006207.1_g000009
rosa_roxburghii	Rroxscaffold_2G00086230
rosa_rugosa	Rorug02G0511100 Rorug02G0511200 Rorug02G0511200
rosa_samantha	Rh2AG579300 Rh2BG461500 Rh2BG590300 Rh2CG561000 Rh2DG470700 Rh2DG600700
rosa_wichuraiana	Rw2G048080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	289
AclWI	GGATC	3 cut(s)	418, 436, 503
AcuI	CTGAAG	1 cut(s)	495
AfaI	GTAC	2 cut(s)	64, 391
AfiI	CCNNNNNNNGG	2 cut(s)	174, 650
AflIII	ACRYGT	2 cut(s)	225, 536
AgsI	TTSAA	4 cut(s)	25, 41, 104, 670
AhlI	ACTAGT	1 cut(s)	323
AjnI	CCWGG	1 cut(s)	446
AluBI	AGCT	1 cut(s)	213
AluI	AGCT	1 cut(s)	213
Alw26I	GTCTC	2 cut(s)	335, 390
AlwI	GGATC	3 cut(s)	418, 436, 503
AoxI	GGCC	1 cut(s)	245
ApeKI	GCWGC	3 cut(s)	179, 197, 286
AspLEI	GCGC	1 cut(s)	8
AspS9I	GGNCC	2 cut(s)	246, 450
AvaII	GGWCC	1 cut(s)	450
BaeI	ACNNNNGTAYC	2 cut(s)	265, 298
BbvI	GCAGC	3 cut(s)	166, 209, 298
BccI	CCATC	3 cut(s)	287, 419, 616
BciT130I	CCWGG	1 cut(s)	448
BcoDI	GTCTC	2 cut(s)	335, 390
BcuI	ACTAGT	1 cut(s)	323
BfaI	CTAG	2 cut(s)	306, 324
BfmI	CTRYAG	2 cut(s)	149, 195
BfoI	RGCGCY	1 cut(s)	9
BisI	GCNGC	3 cut(s)	180, 198, 287
BlsI	GCNGC	3 cut(s)	181, 199, 288
BmcAI	AGTACT	1 cut(s)	64
Bme1390I	CCNGG	1 cut(s)	448
Bme18I	GGWCC	1 cut(s)	450
BmgT120I	GGNCC	2 cut(s)	246, 450
BmrFI	CCNGG	1 cut(s)	448
BmsI	GCATC	3 cut(s)	191, 250, 358
BpmI	CTGGAG	1 cut(s)	540
BpuEI	CTTGAG	1 cut(s)	563
BsaI	GGTCTC	1 cut(s)	335
BsaJI	CCNNGG	1 cut(s)	242
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 650
Bse1I	ACTGG	1 cut(s)	490
BseBI	CCWGG	1 cut(s)	448
BseDI	CCNNGG	1 cut(s)	242
BseGI	GGATG	5 cut(s)	164, 276, 298, 529, 627
BseLI	CCNNNNNNNGG	2 cut(s)	174, 650
BseNI	ACTGG	1 cut(s)	490
BseRI	GAGGAG	2 cut(s)	228, 353
BseXI	GCAGC	3 cut(s)	166, 209, 298
BshFI	GGCC	1 cut(s)	247
BslI	CCNNNNNNNGG	2 cut(s)	174, 650
BsmAI	GTCTC	2 cut(s)	335, 390
BsmI	GAATGC	2 cut(s)	31, 665
BsnI	GGCC	1 cut(s)	247
Bso31I	GGTCTC	1 cut(s)	335
Bsp143I	GATC	3 cut(s)	410, 428, 495
BspACI	CCGC	1 cut(s)	289
BspANI	GGCC	1 cut(s)	247
BspHI	TCATGA	1 cut(s)	334
BspMAI	CTGCAG	1 cut(s)	199
BspPI	GGATC	3 cut(s)	418, 436, 503
BspTNI	GGTCTC	1 cut(s)	335
BsrI	ACTGG	1 cut(s)	490
BssECI	CCNNGG	1 cut(s)	242
BssMI	GATC	3 cut(s)	410, 428, 495
BssT1I	CCWWGG	1 cut(s)	242
Bst2UI	CCWGG	1 cut(s)	448
Bst4CI	ACNGT	4 cut(s)	62, 80, 132, 153
Bst6I	CTCTTC	2 cut(s)	133, 513
BstDEI	CTNAG	2 cut(s)	89, 353
BstF5I	GGATG	5 cut(s)	164, 276, 298, 529, 627
BstH2I	RGCGCY	1 cut(s)	9
BstHHI	GCGC	1 cut(s)	8
BstKTI	GATC	3 cut(s)	413, 431, 498
BstMAI	GTCTC	2 cut(s)	335, 390
BstMBI	GATC	3 cut(s)	410, 428, 495
BstNI	CCWGG	1 cut(s)	448
BstNSI	RCATGY	2 cut(s)	229, 540
BstSCI	CCNGG	1 cut(s)	446
BstSFI	CTRYAG	2 cut(s)	149, 195
BstV1I	GCAGC	3 cut(s)	166, 209, 298
BstX2I	RGATCY	1 cut(s)	410
BstYI	RGATCY	1 cut(s)	410
BsuRI	GGCC	1 cut(s)	247
BtsCI	GGATG	5 cut(s)	164, 276, 298, 529, 627
BtsIMutI	CAGTG	1 cut(s)	128
CciI	TCATGA	1 cut(s)	334
CfoI	GCGC	1 cut(s)	8
Cfr13I	GGNCC	2 cut(s)	246, 450
Csp6I	GTAC	2 cut(s)	63, 390
CviAII	CATG	4 cut(s)	226, 335, 537, 661
CviJI	RGCY	4 cut(s)	179, 200, 213, 247
CviKI_1	RGCY	4 cut(s)	179, 200, 213, 247
CviQI	GTAC	2 cut(s)	63, 390
DdeI	CTNAG	2 cut(s)	89, 353
DpnI	GATC	3 cut(s)	412, 430, 497
DpnII	GATC	3 cut(s)	410, 428, 495
Eam1104I	CTCTTC	2 cut(s)	133, 513
EarI	CTCTTC	2 cut(s)	133, 513
Eco130I	CCWWGG	1 cut(s)	242
Eco31I	GGTCTC	1 cut(s)	335
Eco47I	GGWCC	1 cut(s)	450
Eco57I	CTGAAG	1 cut(s)	495
EcoO109I	RGGNCCY	2 cut(s)	246, 450
EcoRII	CCWGG	1 cut(s)	446
EcoT14I	CCWWGG	1 cut(s)	242
ErhI	CCWWGG	1 cut(s)	242
FaeI	CATG	4 cut(s)	229, 338, 540, 664
FatI	CATG	4 cut(s)	225, 334, 536, 660
FauI	CCCGC	1 cut(s)	282
Fnu4HI	GCNGC	3 cut(s)	180, 198, 287
FokI	GGATG	5 cut(s)	151, 263, 305, 536, 634
Fsp4HI	GCNGC	3 cut(s)	180, 198, 287
FspBI	CTAG	2 cut(s)	306, 324
GlaI	GCGC	1 cut(s)	7
GluI	GCNGC	3 cut(s)	180, 198, 287
GsuI	CTGGAG	1 cut(s)	540
HaeII	RGCGCY	1 cut(s)	9
HaeIII	GGCC	1 cut(s)	247
HhaI	GCGC	1 cut(s)	8
Hin1II	CATG	4 cut(s)	229, 338, 540, 664
Hin6I	GCGC	1 cut(s)	6
HinP1I	GCGC	1 cut(s)	6
HinfI	GANTC	2 cut(s)	52, 374
Hpy188I	TCNGA	4 cut(s)	137, 223, 379, 514
Hpy188III	TCNNGA	3 cut(s)	335, 542, 557
HpyCH4III	ACNGT	4 cut(s)	62, 80, 132, 153
HpyCH4V	TGCA	5 cut(s)	68, 182, 197, 286, 371
HpyF3I	CTNAG	2 cut(s)	89, 353
Hsp92II	CATG	4 cut(s)	229, 338, 540, 664
HspAI	GCGC	1 cut(s)	6
Kzo9I	GATC	3 cut(s)	410, 428, 495
LmnI	GCTCC	1 cut(s)	162
LpnPI	CCDG	8 cut(s)	158, 283, 378, 433, 460, 471, 570, 657
Lsp1109I	GCAGC	3 cut(s)	166, 209, 298
LweI	GCATC	3 cut(s)	191, 250, 358
MaeI	CTAG	2 cut(s)	306, 324
MalI	GATC	3 cut(s)	412, 430, 497
MboI	GATC	3 cut(s)	410, 428, 495
MboII	GAAGA	6 cut(s)	53, 150, 434, 501, 527, 530
MflI	RGATCY	1 cut(s)	410
MseI	TTAA	1 cut(s)	682
MslI	CAYNNNNRTG	1 cut(s)	333
MspA1I	CMGCKG	1 cut(s)	289
MspR9I	CCNGG	1 cut(s)	448
Mva1269I	GAATGC	2 cut(s)	31, 665
MvaI	CCWGG	1 cut(s)	448
NdeII	GATC	3 cut(s)	410, 428, 495
NlaIII	CATG	4 cut(s)	229, 338, 540, 664
NspI	RCATGY	2 cut(s)	229, 540
PagI	TCATGA	1 cut(s)	334
PciI	ACATGT	2 cut(s)	225, 536
PctI	GAATGC	2 cut(s)	31, 665
PfeI	GAWTC	2 cut(s)	52, 374
PkrI	GCNGC	3 cut(s)	181, 199, 288
PpuMI	RGGWCCY	1 cut(s)	450
PscI	ACATGT	2 cut(s)	225, 536
Psp5II	RGGWCCY	1 cut(s)	450
Psp6I	CCWGG	1 cut(s)	446
PspGI	CCWGG	1 cut(s)	446
PspPI	GGNCC	2 cut(s)	246, 450
PspPPI	RGGWCCY	1 cut(s)	450
PstI	CTGCAG	1 cut(s)	199
PsuI	RGATCY	1 cut(s)	410
RsaI	GTAC	2 cut(s)	64, 391
RsaNI	GTAC	2 cut(s)	63, 390
RseI	CAYNNNNRTG	1 cut(s)	333
SaqAI	TTAA	1 cut(s)	682
SatI	GCNGC	3 cut(s)	180, 198, 287
Sau3AI	GATC	3 cut(s)	410, 428, 495
Sau96I	GGNCC	2 cut(s)	246, 450
ScaI	AGTACT	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	448
SetI	ASST	4 cut(s)	215, 352, 452, 660
SfaNI	GCATC	3 cut(s)	191, 250, 358
SfcI	CTRYAG	2 cut(s)	149, 195
SinI	GGWCC	1 cut(s)	450
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	1 cut(s)	542
SmoI	CTYRAG	1 cut(s)	542
SpeI	ACTAGT	1 cut(s)	323
SsiI	CCGC	1 cut(s)	289
SspMI	CTAG	2 cut(s)	306, 324
StyD4I	CCNGG	1 cut(s)	446
StyI	CCWWGG	1 cut(s)	242
TaaI	ACNGT	4 cut(s)	62, 80, 132, 153
TaqI	TCGA	1 cut(s)	455
TaqII	GACCGA	1 cut(s)	359
TatI	WGTACW	2 cut(s)	62, 389
TfiI	GAWTC	2 cut(s)	52, 374
Tru1I	TTAA	1 cut(s)	682
Tru9I	TTAA	1 cut(s)	682
TscAI	CASTG	1 cut(s)	135
TseI	GCWGC	3 cut(s)	179, 197, 286
TspDTI	ATGAA	2 cut(s)	114, 473
TspGWI	ACGGA	2 cut(s)	72, 269
TspRI	CASTG	1 cut(s)	135
VpaK11BI	GGWCC	1 cut(s)	450
XceI	RCATGY	2 cut(s)	229, 540
XspI	CTAG	2 cut(s)	306, 324
ZrmI	AGTACT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.