Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0006042

Physical Location & Seq

Genomic Coordinates Reverse (-)

114876 .. 116805

Gene Structure 1930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g00150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGGTTCTGTTTGTTGTTGTTTGAATGCTGAGGAGTTTGAAGATTATGTGAATCCGAACAGTTCTGCATATAGGGAATGTGTCTGTCTTCGTTGCTTTCTTCAGAACTTTCTAAATGTGTATACATCATTATTCAGAAGAGGGGAAGTGCATTCAATCCCCTCATCCATTCAGGGGGCTGCATCAATGAATTCCTCGGCATCACTTGACAACTCCTTATCTGACATGTTTAGTTCGCCTCCAAGGCCCTTGCCTTATGATGTTGACCCTAGATACATCCAGTTACAGCGGGATGGGTTGATTTCTAGGCGGGAGAAGGGCTCAAGCCACTCTCATGAGGAGGCTGAACCTCTAAGAAGTGATACTGATGCAGATTCTGAAAGTTTGAGTACAGGAGAAAAATGGAATGGCTCTGCTTGTGGAGATGGGTCAATAGAACATCGTTCCAAGTCCTCAATGAAGTTATCATCAGCCAAAGCCACAACTGGAGTTGGGAACTTCTATACATCATCGGAGGATGAGGATGTTTGCCCAACATGTCTTGAAGAATACACACCAGAAAACCCCAAAATAATGACAAAATGCTCTCATCATTTTCACCTTGGTTGTATATATGAATGGATGGAGAGAAGTGAAAGCTGCCCTGTTTGTGGCAAGGTGATGGTATTCGATGAAACGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

228

Amino Acids

25.21

Weight (kDa)

4.87

Isoelectric Point (pI)

54.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	174 - 217	2.8e-10	RING-H2 zinc finger domain
zf-RING_2	PF13639	176 - 217	1.1e-11	Ring finger domain
zf-ANAPC11	PF12861	176 - 224	4e-07	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-C3HC4_2	PF13923	177 - 217	4.5e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	177 - 217	5.7e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	177 - 215	5.7e-07	RING-type zinc-finger
zf-RING_5	PF14634	177 - 219	2.8e-06	zinc-RING finger domain
zf-RING_11	PF17123	177 - 204	9e-06	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38895 AT5G38895 AT5G38895
fragaria_vesca	FvH4_6g46360 FvH4_6g46360
malus_domestica	MD09G1074400.v1.1 MD17G1065800.v1.1
prunus_persica	Prupe.3G248900_v2.0.a1 Prupe.3G248900_v2.0.a1 Prupe.3G248900_v2.0.a1
pyrus_communis	pycom09g00150 pycom17g06610
rosa_chinensis	RchiOBHm_Chr2g0146111 RchiOBHm_Chr2g0164901
rosa_laevigata	RLG00000021495
rosa_multiflora	Rmu_sc0006207.1_g000009
rosa_roxburghii	Rroxscaffold_2G00086230
rosa_rugosa	Rorug02G0511100 Rorug02G0511200 Rorug02G0511200
rosa_samantha	Rh2AG579300 Rh2BG461500 Rh2BG590300 Rh2CG561000 Rh2DG470700 Rh2DG600700
rosa_wichuraiana	Rw2G048080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	122
AciI	CCGC	2 cut(s)	289, 310
AcsI	RAATTY	1 cut(s)	190
AcuI	CTGAAG	1 cut(s)	86
AfaI	GTAC	1 cut(s)	391
AfiI	CCNNNNNNNGG	2 cut(s)	174, 650
AflIII	ACRYGT	2 cut(s)	225, 536
AgsI	TTSAA	4 cut(s)	25, 41, 156, 545
AluBI	AGCT	1 cut(s)	639
AluI	AGCT	1 cut(s)	639
AlwNI	CAGNNNCTG	1 cut(s)	377
AoxI	GGCC	1 cut(s)	245
ApeKI	GCWGC	2 cut(s)	179, 639
ApoI	RAATTY	1 cut(s)	190
AspS9I	GGNCC	1 cut(s)	246
AsuHPI	GGTGA	2 cut(s)	590, 670
BanII	GRGCYC	1 cut(s)	323
BbsI	GAAGAC	1 cut(s)	80
BbvCI	CCTCAGC	1 cut(s)	30
BbvI	GCAGC	2 cut(s)	166, 626
BccI	CCATC	4 cut(s)	287, 419, 616, 655
BfaI	CTAG	2 cut(s)	270, 306
BglI	GCCNNNNNGGC	1 cut(s)	244
BisI	GCNGC	2 cut(s)	180, 640
BlsI	GCNGC	2 cut(s)	181, 641
BmgT120I	GGNCC	1 cut(s)	246
BmsI	GCATC	3 cut(s)	191, 209, 358
BpiI	GAAGAC	1 cut(s)	80
BplI	GAGNNNNNCTC	2 cut(s)	305, 337
BpmI	CTGGAG	1 cut(s)	507
Bpu10I	CCTNAGC	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	307
BsaJI	CCNNGG	3 cut(s)	195, 242, 601
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 650
Bse1I	ACTGG	2 cut(s)	280, 490
BseDI	CCNNGG	3 cut(s)	195, 242, 601
BseGI	GGATG	6 cut(s)	164, 276, 298, 523, 529, 627
BseLI	CCNNNNNNNGG	2 cut(s)	174, 650
BseMII	CTCAG	1 cut(s)	21
BseNI	ACTGG	2 cut(s)	280, 490
BseRI	GAGGAG	2 cut(s)	47, 353
BseXI	GCAGC	2 cut(s)	166, 626
BshFI	GGCC	1 cut(s)	247
BslI	CCNNNNNNNGG	2 cut(s)	174, 650
BsmI	GAATGC	2 cut(s)	31, 151
BsnI	GGCC	1 cut(s)	247
Bsp1286I	GDGCHC	1 cut(s)	323
BspACI	CCGC	2 cut(s)	289, 310
BspANI	GGCC	1 cut(s)	247
BspCNI	CTCAG	1 cut(s)	22
BspHI	TCATGA	1 cut(s)	334
BsrI	ACTGG	2 cut(s)	280, 490
BssECI	CCNNGG	3 cut(s)	195, 242, 601
BssNAI	GTATAC	1 cut(s)	123
BssT1I	CCWWGG	2 cut(s)	242, 601
Bst1107I	GTATAC	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	62
Bst6I	CTCTTC	1 cut(s)	133
BstDEI	CTNAG	2 cut(s)	30, 353
BstF5I	GGATG	6 cut(s)	164, 276, 298, 523, 529, 627
BstMWI	GCNNNNNNNGC	1 cut(s)	244
BstNSI	RCATGY	2 cut(s)	229, 540
BstV1I	GCAGC	2 cut(s)	166, 626
BstV2I	GAAGAC	1 cut(s)	80
BstZ17I	GTATAC	1 cut(s)	123
BsuRI	GGCC	1 cut(s)	247
BtsCI	GGATG	6 cut(s)	164, 276, 298, 523, 529, 627
CaiI	CAGNNNCTG	1 cut(s)	377
CciI	TCATGA	1 cut(s)	334
Cfr13I	GGNCC	1 cut(s)	246
Csp6I	GTAC	1 cut(s)	390
CviAII	CATG	3 cut(s)	226, 335, 537
CviJI	RGCY	9 cut(s)	179, 247, 321, 327, 344, 411, 473, 479, 639
CviKI_1	RGCY	9 cut(s)	179, 247, 321, 327, 344, 411, 473, 479, 639
CviQI	GTAC	1 cut(s)	390
DdeI	CTNAG	2 cut(s)	30, 353
Eam1104I	CTCTTC	1 cut(s)	133
EarI	CTCTTC	1 cut(s)	133
Eco130I	CCWWGG	2 cut(s)	242, 601
Eco24I	GRGCYC	1 cut(s)	323
Eco57I	CTGAAG	1 cut(s)	86
EcoO109I	RGGNCCY	1 cut(s)	246
EcoRI	GAATTC	1 cut(s)	190
EcoT14I	CCWWGG	2 cut(s)	242, 601
EcoT38I	GRGCYC	1 cut(s)	323
ErhI	CCWWGG	2 cut(s)	242, 601
FaeI	CATG	3 cut(s)	229, 338, 540
FatI	CATG	3 cut(s)	225, 334, 536
FauI	CCCGC	2 cut(s)	282, 303
FblI	GTMKAC	1 cut(s)	122
Fnu4HI	GCNGC	2 cut(s)	180, 640
FokI	GGATG	6 cut(s)	151, 263, 305, 530, 536, 634
FriOI	GRGCYC	1 cut(s)	323
Fsp4HI	GCNGC	2 cut(s)	180, 640
FspBI	CTAG	2 cut(s)	270, 306
GluI	GCNGC	2 cut(s)	180, 640
GsuI	CTGGAG	1 cut(s)	507
HaeIII	GGCC	1 cut(s)	247
Hin1II	CATG	3 cut(s)	229, 338, 540
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HinfI	GANTC	2 cut(s)	52, 374
HphI	GGTGA	2 cut(s)	590, 670
Hpy166II	GTNNAC	2 cut(s)	123, 265
Hpy188I	TCNGA	6 cut(s)	57, 105, 137, 223, 379, 514
Hpy188III	TCNNGA	2 cut(s)	335, 542
Hpy8I	GTNNAC	2 cut(s)	123, 265
HpyAV	CCTTC	1 cut(s)	310
HpyCH4III	ACNGT	1 cut(s)	62
HpyCH4V	TGCA	4 cut(s)	68, 151, 182, 371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	244
HpyF3I	CTNAG	2 cut(s)	30, 353
Hsp92II	CATG	3 cut(s)	229, 338, 540
LpnPI	CCDG	6 cut(s)	158, 293, 378, 471, 570, 657
Lsp1109I	GCAGC	2 cut(s)	166, 626
LweI	GCATC	3 cut(s)	191, 209, 358
MaeI	CTAG	2 cut(s)	270, 306
MaeIII	GTNAC	1 cut(s)	282
MboII	GAAGA	5 cut(s)	53, 80, 92, 150, 557
MhlI	GDGCHC	1 cut(s)	323
MluCI	AATT	1 cut(s)	190
MslI	CAYNNNNRTG	1 cut(s)	333
MspA1I	CMGCKG	1 cut(s)	289
Mva1269I	GAATGC	2 cut(s)	31, 151
MwoI	GCNNNNNNNGC	1 cut(s)	244
NlaIII	CATG	3 cut(s)	229, 338, 540
NmeAIII	GCCGAG	1 cut(s)	176
NspI	RCATGY	2 cut(s)	229, 540
PagI	TCATGA	1 cut(s)	334
PciI	ACATGT	2 cut(s)	225, 536
PctI	GAATGC	2 cut(s)	31, 151
PfeI	GAWTC	2 cut(s)	52, 374
PkrI	GCNGC	2 cut(s)	181, 641
PscI	ACATGT	2 cut(s)	225, 536
PspPI	GGNCC	1 cut(s)	246
PstNI	CAGNNNCTG	1 cut(s)	377
RsaI	GTAC	1 cut(s)	391
RsaNI	GTAC	1 cut(s)	390
RseI	CAYNNNNRTG	1 cut(s)	333
SatI	GCNGC	2 cut(s)	180, 640
Sau96I	GGNCC	1 cut(s)	246
SduI	GDGCHC	1 cut(s)	323
SetI	ASST	4 cut(s)	352, 603, 641, 660
SfaNI	GCATC	3 cut(s)	191, 209, 358
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	1 cut(s)	322
SmoI	CTYRAG	1 cut(s)	322
Sse9I	AATT	1 cut(s)	190
SsiI	CCGC	2 cut(s)	289, 310
SspMI	CTAG	2 cut(s)	270, 306
StyI	CCWWGG	2 cut(s)	242, 601
TaaI	ACNGT	1 cut(s)	62
TaqI	TCGA	1 cut(s)	669
TasI	AATT	1 cut(s)	190
TatI	WGTACW	1 cut(s)	389
TfiI	GAWTC	2 cut(s)	52, 374
TseI	GCWGC	2 cut(s)	179, 639
TspDTI	ATGAA	3 cut(s)	203, 473, 630
XapI	RAATTY	1 cut(s)	190
XceI	RCATGY	2 cut(s)	229, 540
XmiI	GTMKAC	1 cut(s)	122
XspI	CTAG	2 cut(s)	270, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.