Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006207.1

Orthogroup ID

OG0006042

Physical Location & Seq

Genomic Coordinates Forward (+)

45770 .. 48687

Gene Structure 2918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006207.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ctgtctttgtccgcccaccaagatcaatctctatccttctctccattccacctaaaggtgaggaatgcaaccttaagttatatcaaaaccacaaagccgtccagctttgttagtcagaagagggagggtgctggtccgcggagagttgttggggaggtgtatttcgacactggcattatgggcgctgtctgttgttgtttgaatgctgatgattttgaagattatgtgaatccaaacagttctgcattgaggaactgtccatgtcttggttgctttgttcaaaactttgtaaatgtgtattcatcactgttcagaagaggggaactacagtcgctcccctcatccattcagggggctgcatcgatgacttctgcagcctcacttgatagctctttatctgacatgtatcgctctcctccaaggcccttgccttatgatgctgaccccagatacatccgtttgcagcgggatggattggtttctaggcgtgagaaaggcactagtcattctcatgaggagactgaacctctaagaagtgatactgatgcagattcagaatgtttgagtacaggagacaaatggaatggatctacttgtgaagatggatcaaaagaacatcattccaggtcctcgatgaagttgtcatctgcaaaagcaacaaccggatttgggatcatttatacatcttcagaagaagaggatgtatgcccaacatgtcttgaagaatatactccagaaaaccccaaaataatgacaaaatgctctcatcattatcatctcgcttgtatatatgagtggatggagagaagtgaaagttgtcctgtttgtggcaaggtcatggcattcgatgaaacgacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

286

Amino Acids

31.7

Weight (kDa)

5.51

Isoelectric Point (pI)

60.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38895 AT5G38895 AT5G38895
fragaria_vesca	FvH4_6g46360 FvH4_6g46360
malus_domestica	MD09G1074400.v1.1 MD17G1065800.v1.1
prunus_persica	Prupe.3G248900_v2.0.a1 Prupe.3G248900_v2.0.a1 Prupe.3G248900_v2.0.a1
pyrus_communis	pycom09g00150 pycom17g06610
rosa_chinensis	RchiOBHm_Chr2g0146111 RchiOBHm_Chr2g0164901
rosa_laevigata	RLG00000021495
rosa_multiflora	Rmu_sc0006207.1_g000009
rosa_roxburghii	Rroxscaffold_2G00086230
rosa_rugosa	Rorug02G0511100 Rorug02G0511200 Rorug02G0511200
rosa_samantha	Rh2AG579300 Rh2BG461500 Rh2BG590300 Rh2CG561000 Rh2DG470700 Rh2DG600700
rosa_wichuraiana	Rw2G048080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	266
AccII	CGCG	1 cut(s)	139
AciI	CCGC	4 cut(s)	12, 137, 139, 466
AclWI	GGATC	3 cut(s)	595, 613, 680
AcuI	CTGAAG	1 cut(s)	672
AfaI	GTAC	1 cut(s)	568
AfiI	CCNNNNNNNGG	5 cut(s)	55, 266, 351, 669, 827
AflII	CTTAAG	1 cut(s)	73
AflIII	ACRYGT	2 cut(s)	402, 713
AgsI	TTSAA	4 cut(s)	202, 218, 281, 722
AhlI	ACTAGT	1 cut(s)	500
AjnI	CCWGG	1 cut(s)	623
AluBI	AGCT	2 cut(s)	105, 390
AluI	AGCT	2 cut(s)	105, 390
Alw26I	GTCTC	2 cut(s)	512, 567
AlwI	GGATC	3 cut(s)	595, 613, 680
AoxI	GGCC	1 cut(s)	422
ApeKI	GCWGC	3 cut(s)	356, 374, 463
AspLEI	GCGC	1 cut(s)	185
AspS9I	GGNCC	3 cut(s)	134, 423, 627
AsuHPI	GGTGA	1 cut(s)	70
AvaII	GGWCC	2 cut(s)	134, 627
BaeI	ACNNNNGTAYC	2 cut(s)	442, 475
BbvI	GCAGC	3 cut(s)	343, 386, 475
BccI	CCATC	3 cut(s)	464, 596, 793
BceAI	ACGGC	1 cut(s)	82
BciT130I	CCWGG	1 cut(s)	625
BcoDI	GTCTC	2 cut(s)	512, 567
BcuI	ACTAGT	1 cut(s)	500
BfaI	CTAG	2 cut(s)	483, 501
BfmI	CTRYAG	2 cut(s)	326, 372
BfoI	RGCGCY	1 cut(s)	186
BfrI	CTTAAG	1 cut(s)	73
BisI	GCNGC	3 cut(s)	357, 375, 464
BlsI	GCNGC	3 cut(s)	358, 376, 465
Bme1390I	CCNGG	1 cut(s)	625
Bme18I	GGWCC	2 cut(s)	134, 627
BmgT120I	GGNCC	3 cut(s)	134, 423, 627
BmrFI	CCNGG	1 cut(s)	625
BmsI	GCATC	3 cut(s)	368, 427, 535
BpmI	CTGGAG	1 cut(s)	717
Bsa29I	ATCGAT	1 cut(s)	362
BsaJI	CCNNGG	2 cut(s)	137, 419
BsaWI	WCCGGW	1 cut(s)	662
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bsc4I	CCNNNNNNNGG	5 cut(s)	55, 266, 351, 669, 827
Bse1I	ACTGG	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	625
BseCI	ATCGAT	1 cut(s)	362
BseDI	CCNNGG	2 cut(s)	137, 419
BseGI	GGATG	5 cut(s)	341, 453, 475, 706, 804
BseLI	CCNNNNNNNGG	5 cut(s)	55, 266, 351, 669, 827
BseNI	ACTGG	1 cut(s)	175
BseRI	GAGGAG	2 cut(s)	405, 530
BseXI	GCAGC	3 cut(s)	343, 386, 475
Bsh1236I	CGCG	1 cut(s)	139
BshFI	GGCC	1 cut(s)	424
BshVI	ATCGAT	1 cut(s)	362
BsiSI	CCGG	1 cut(s)	663
BslI	CCNNNNNNNGG	5 cut(s)	55, 266, 351, 669, 827
BsmAI	GTCTC	2 cut(s)	512, 567
BsmI	GAATGC	3 cut(s)	70, 208, 842
BsnI	GGCC	1 cut(s)	424
Bsp143I	GATC	4 cut(s)	22, 587, 605, 672
BspACI	CCGC	4 cut(s)	12, 137, 139, 466
BspANI	GGCC	1 cut(s)	424
BspDI	ATCGAT	1 cut(s)	362
BspFNI	CGCG	1 cut(s)	139
BspHI	TCATGA	1 cut(s)	511
BspMAI	CTGCAG	1 cut(s)	376
BspPI	GGATC	3 cut(s)	595, 613, 680
BspTI	CTTAAG	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	175
BssECI	CCNNGG	2 cut(s)	137, 419
BssMI	GATC	4 cut(s)	22, 587, 605, 672
BssT1I	CCWWGG	1 cut(s)	419
Bst2UI	CCWGG	1 cut(s)	625
Bst4CI	ACNGT	4 cut(s)	239, 257, 309, 330
Bst6I	CTCTTC	3 cut(s)	113, 310, 690
BstAFI	CTTAAG	1 cut(s)	73
BstDEI	CTNAG	1 cut(s)	530
BstDSI	CCRYGG	1 cut(s)	137
BstF5I	GGATG	5 cut(s)	341, 453, 475, 706, 804
BstFNI	CGCG	1 cut(s)	139
BstH2I	RGCGCY	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	4 cut(s)	25, 590, 608, 675
BstMAI	GTCTC	2 cut(s)	512, 567
BstMBI	GATC	4 cut(s)	22, 587, 605, 672
BstMWI	GCNNNNNNNGC	1 cut(s)	180
BstNI	CCWGG	1 cut(s)	625
BstNSI	RCATGY	2 cut(s)	406, 717
BstSCI	CCNGG	1 cut(s)	623
BstSFI	CTRYAG	2 cut(s)	326, 372
BstUI	CGCG	1 cut(s)	139
BstV1I	GCAGC	3 cut(s)	343, 386, 475
BstX2I	RGATCY	1 cut(s)	587
BstYI	RGATCY	1 cut(s)	587
Bsu15I	ATCGAT	1 cut(s)	362
BsuRI	GGCC	1 cut(s)	424
BsuTUI	ATCGAT	1 cut(s)	362
BtgI	CCRYGG	1 cut(s)	137
BtsCI	GGATG	5 cut(s)	341, 453, 475, 706, 804
BtsIMutI	CAGTG	2 cut(s)	168, 305
CciI	TCATGA	1 cut(s)	511
CfoI	GCGC	1 cut(s)	185
Cfr13I	GGNCC	3 cut(s)	134, 423, 627
Cfr42I	CCGCGG	1 cut(s)	140
ClaI	ATCGAT	1 cut(s)	362
Csp6I	GTAC	1 cut(s)	567
CviAII	CATG	5 cut(s)	261, 403, 512, 714, 838
CviJI	RGCY	6 cut(s)	97, 105, 356, 377, 390, 424
CviKI_1	RGCY	6 cut(s)	97, 105, 356, 377, 390, 424
CviQI	GTAC	1 cut(s)	567
DdeI	CTNAG	1 cut(s)	530
DpnI	GATC	4 cut(s)	24, 589, 607, 674
DpnII	GATC	4 cut(s)	22, 587, 605, 672
Eam1104I	CTCTTC	3 cut(s)	113, 310, 690
EarI	CTCTTC	3 cut(s)	113, 310, 690
Eco130I	CCWWGG	1 cut(s)	419
Eco47I	GGWCC	2 cut(s)	134, 627
Eco57I	CTGAAG	1 cut(s)	672
EcoO109I	RGGNCCY	2 cut(s)	423, 627
EcoRII	CCWGG	1 cut(s)	623
EcoT14I	CCWWGG	1 cut(s)	419
ErhI	CCWWGG	1 cut(s)	419
FaeI	CATG	5 cut(s)	264, 406, 515, 717, 841
FatI	CATG	5 cut(s)	260, 402, 511, 713, 837
FauI	CCCGC	1 cut(s)	459
Fnu4HI	GCNGC	3 cut(s)	357, 375, 464
FokI	GGATG	5 cut(s)	328, 440, 482, 713, 811
Fsp4HI	GCNGC	3 cut(s)	357, 375, 464
FspBI	CTAG	2 cut(s)	483, 501
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	3 cut(s)	357, 375, 464
GsuI	CTGGAG	1 cut(s)	717
HaeII	RGCGCY	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	424
HapII	CCGG	1 cut(s)	663
HhaI	GCGC	1 cut(s)	185
Hin1II	CATG	5 cut(s)	264, 406, 515, 717, 841
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HinfI	GANTC	2 cut(s)	229, 551
HpaII	CCGG	1 cut(s)	663
HphI	GGTGA	1 cut(s)	70
Hpy188I	TCNGA	5 cut(s)	117, 314, 400, 556, 691
Hpy188III	TCNNGA	3 cut(s)	512, 719, 734
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	4 cut(s)	239, 257, 309, 330
HpyCH4V	TGCA	7 cut(s)	68, 245, 359, 374, 463, 548, 650
HpyF10VI	GCNNNNNNNGC	1 cut(s)	180
HpyF3I	CTNAG	1 cut(s)	530
Hsp92II	CATG	5 cut(s)	264, 406, 515, 717, 841
HspAI	GCGC	1 cut(s)	183
KspI	CCGCGG	1 cut(s)	140
Kzo9I	GATC	4 cut(s)	22, 587, 605, 672
LmnI	GCTCC	1 cut(s)	339
Lsp1109I	GCAGC	3 cut(s)	343, 386, 475
LweI	GCATC	3 cut(s)	368, 427, 535
MaeI	CTAG	2 cut(s)	483, 501
MalI	GATC	4 cut(s)	24, 589, 607, 674
MboI	GATC	4 cut(s)	22, 587, 605, 672
MboII	GAAGA	8 cut(s)	130, 230, 327, 611, 678, 704, 707, 734
MflI	RGATCY	1 cut(s)	587
MseI	TTAA	2 cut(s)	74, 859
MslI	CAYNNNNRTG	1 cut(s)	510
MspA1I	CMGCKG	2 cut(s)	139, 466
MspCI	CTTAAG	1 cut(s)	73
MspI	CCGG	1 cut(s)	663
MspR9I	CCNGG	1 cut(s)	625
Mva1269I	GAATGC	3 cut(s)	70, 208, 842
MvaI	CCWGG	1 cut(s)	625
MvnI	CGCG	1 cut(s)	139
MwoI	GCNNNNNNNGC	1 cut(s)	180
NdeII	GATC	4 cut(s)	22, 587, 605, 672
NlaIII	CATG	5 cut(s)	264, 406, 515, 717, 841
NspI	RCATGY	2 cut(s)	406, 717
PagI	TCATGA	1 cut(s)	511
PciI	ACATGT	2 cut(s)	402, 713
PctI	GAATGC	3 cut(s)	70, 208, 842
PfeI	GAWTC	2 cut(s)	229, 551
PflMI	CCANNNNNTGG	1 cut(s)	266
PkrI	GCNGC	3 cut(s)	358, 376, 465
PpuMI	RGGWCCY	1 cut(s)	627
PscI	ACATGT	2 cut(s)	402, 713
Psp5II	RGGWCCY	1 cut(s)	627
Psp6I	CCWGG	1 cut(s)	623
PspGI	CCWGG	1 cut(s)	623
PspPI	GGNCC	3 cut(s)	134, 423, 627
PspPPI	RGGWCCY	1 cut(s)	627
PstI	CTGCAG	1 cut(s)	376
PsuI	RGATCY	1 cut(s)	587
RsaI	GTAC	1 cut(s)	568
RsaNI	GTAC	1 cut(s)	567
RseI	CAYNNNNRTG	1 cut(s)	510
SacII	CCGCGG	1 cut(s)	140
SaqAI	TTAA	2 cut(s)	74, 859
SatI	GCNGC	3 cut(s)	357, 375, 464
Sau3AI	GATC	4 cut(s)	22, 587, 605, 672
Sau96I	GGNCC	3 cut(s)	134, 423, 627
ScrFI	CCNGG	1 cut(s)	625
SetI	ASST	9 cut(s)	54, 60, 74, 107, 159, 392, 529, 629, 837
SfaNI	GCATC	3 cut(s)	368, 427, 535
SfcI	CTRYAG	2 cut(s)	326, 372
Sfr303I	CCGCGG	1 cut(s)	140
SgrBI	CCGCGG	1 cut(s)	140
SinI	GGWCC	2 cut(s)	134, 627
SmiMI	CAYNNNNRTG	1 cut(s)	510
SmlI	CTYRAG	1 cut(s)	73
SmoI	CTYRAG	1 cut(s)	73
SpeI	ACTAGT	1 cut(s)	500
SsiI	CCGC	4 cut(s)	12, 137, 139, 466
SspMI	CTAG	2 cut(s)	483, 501
StyD4I	CCNGG	1 cut(s)	623
StyI	CCWWGG	1 cut(s)	419
TaaI	ACNGT	4 cut(s)	239, 257, 309, 330
TaqI	TCGA	4 cut(s)	165, 362, 632, 846
TatI	WGTACW	1 cut(s)	566
TfiI	GAWTC	2 cut(s)	229, 551
Tru1I	TTAA	2 cut(s)	74, 859
Tru9I	TTAA	2 cut(s)	74, 859
TscAI	CASTG	2 cut(s)	175, 312
TseI	GCWGC	3 cut(s)	356, 374, 463
TspDTI	ATGAA	2 cut(s)	291, 650
TspGWI	ACGGA	1 cut(s)	446
TspRI	CASTG	2 cut(s)	175, 312
Van91I	CCANNNNNTGG	1 cut(s)	266
Vha464I	CTTAAG	1 cut(s)	73
VpaK11BI	GGWCC	2 cut(s)	134, 627
XceI	RCATGY	2 cut(s)	406, 717
XspI	CTAG	2 cut(s)	483, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.