Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0006042

Physical Location & Seq

Genomic Coordinates Forward (+)

65294327 .. 65295175

Gene Structure 849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG461500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGAAGTTGTCATCGGCAAAAGCAACAACTGGATTTGGGATCATTTATACATCTTCAGAAGAAGAGGAGGATAATATACTCCAGAAAAAAACAATGACAAAATGCTCTCATCGTTATCATCTTGGTTGTATATATGAGTGGATGGAGAGAAGTGAAAGTTGTCCTGTTTGTAGCAAGGGAAATTCCTTTACCACAACATATGTGAAGGTTAAATTTAAAAATTGTAACTATATATATAGTTCTGTCCTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

84

Amino Acids

9.66

Weight (kDa)

8.27

Isoelectric Point (pI)

53.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	23 - 57	3.2e-10	RING-H2 zinc finger domain
zf-C3HC4	PF00097	26 - 57	4.7e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	28 - 57	1.4e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	31 - 57	6.4e-09	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38895 AT5G38895 AT5G38895
fragaria_vesca	FvH4_6g46360 FvH4_6g46360
malus_domestica	MD09G1074400.v1.1 MD17G1065800.v1.1
prunus_persica	Prupe.3G248900_v2.0.a1 Prupe.3G248900_v2.0.a1 Prupe.3G248900_v2.0.a1
pyrus_communis	pycom09g00150 pycom17g06610
rosa_chinensis	RchiOBHm_Chr2g0146111 RchiOBHm_Chr2g0164901
rosa_laevigata	RLG00000021495
rosa_multiflora	Rmu_sc0006207.1_g000009
rosa_roxburghii	Rroxscaffold_2G00086230
rosa_rugosa	Rorug02G0511100 Rorug02G0511200 Rorug02G0511200
rosa_samantha	Rh2AG579300 Rh2BG461500 Rh2BG590300 Rh2CG561000 Rh2DG470700 Rh2DG600700
rosa_wichuraiana	Rw2G048080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	47
AcsI	RAATTY	2 cut(s)	181, 212
AcuI	CTGAAG	1 cut(s)	39
AjnI	CCWGG	1 cut(s)	246
AlwI	GGATC	1 cut(s)	47
ApoI	RAATTY	2 cut(s)	181, 212
BccI	CCATC	1 cut(s)	136
BciT130I	CCWGG	1 cut(s)	248
Bme1390I	CCNGG	1 cut(s)	248
BmrFI	CCNGG	1 cut(s)	248
BpmI	CTGGAG	1 cut(s)	65
Bse1I	ACTGG	1 cut(s)	34
BseBI	CCWGG	1 cut(s)	248
BseGI	GGATG	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	34
BseRI	GAGGAG	1 cut(s)	80
Bsp143I	GATC	1 cut(s)	39
BspPI	GGATC	1 cut(s)	47
BsrI	ACTGG	1 cut(s)	34
BssMI	GATC	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	248
Bst6I	CTCTTC	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	147
BstKTI	GATC	1 cut(s)	42
BstMBI	GATC	1 cut(s)	39
BstNI	CCWGG	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	147
DpnI	GATC	1 cut(s)	41
DpnII	GATC	1 cut(s)	39
DraI	TTTAAA	1 cut(s)	217
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Eco57I	CTGAAG	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	246
FauNDI	CATATG	1 cut(s)	199
FokI	GGATG	1 cut(s)	154
GsuI	CTGGAG	1 cut(s)	65
Hpy188I	TCNGA	1 cut(s)	58
Hpy188III	TCNNGA	1 cut(s)	82
HpyAV	CCTTC	1 cut(s)	199
Kzo9I	GATC	1 cut(s)	39
LpnPI	CCDG	4 cut(s)	15, 95, 177, 233
MaeIII	GTNAC	1 cut(s)	224
MalI	GATC	1 cut(s)	41
MboI	GATC	1 cut(s)	39
MboII	GAAGA	3 cut(s)	45, 71, 74
MluCI	AATT	3 cut(s)	181, 212, 220
MnlI	CCTC	2 cut(s)	58, 61
MseI	TTAA	2 cut(s)	210, 216
MspR9I	CCNGG	1 cut(s)	248
MvaI	CCWGG	1 cut(s)	248
NdeI	CATATG	1 cut(s)	199
NdeII	GATC	1 cut(s)	39
PfoI	TCCNGGA	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	246
SaqAI	TTAA	2 cut(s)	210, 216
Sau3AI	GATC	1 cut(s)	39
ScrFI	CCNGG	1 cut(s)	248
SetI	ASST	1 cut(s)	210
SgeI	CNNG	5 cut(s)	42, 94, 134, 176, 187
Sse9I	AATT	3 cut(s)	181, 212, 220
StyD4I	CCNGG	1 cut(s)	246
TasI	AATT	3 cut(s)	181, 212, 220
Tru1I	TTAA	2 cut(s)	210, 216
Tru9I	TTAA	2 cut(s)	210, 216
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	2 cut(s)	181, 212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.