Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0006042

Physical Location & Seq

Genomic Coordinates Reverse (-)

4801718 .. 4803518

Gene Structure 1801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g06610.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGGTTCTGTTTGTTGTTGTTTGAATTCTGAGAATTTTGAAGATTATGTGAATCCGAACAGTTCTGCATATAGGGACTGTGCCTGTCTTAGTTGCTTTCTTCAGAACTTTCTAAATGTGTATACATCACTATTCAGAAGAGAGGAAGTGCATTCGATCCCCTCATCCATTCAGGGGGCTGCATCAATGAACTCCTCAGCATCACTTGACAACTCCTTGTCTGACATGTATCGTTCGCCTCCAAGGCCCTTGCCTTATGATGCTGACCCCAGATACATTCGCTTGCAGCGCGATGGGTTGATTTCTAGGCGGGAGAAGGGCTCAAGTCACTCTCATGAGGAGGCTGAACCTCTAAGAAGTGATACCGATGCAGATTCTGAAAGTTTGAGTACAGGAGAAAAATGGAATGGCTCTGCTTGTGAAGATGGGTCAAAAGAACATCGTTCCAAGTCCTCAATGAAGTTCTCATCTGCCAAAGCTACAACTGGAATTGGGAACTTCTATTCATCCTCAGAGGACGAGGATGTTTGTCCAACATGTCTTGAAGAATACACACACGAAAACCCAAAAATAATAACAAAATGCTCTCATCATTTTCACCTTGGTTGTATATATGAGTGGATGGAGAGAAGTGAAAGCTGCCCTGTTTGTGGCAAGGTGATGGTATTCGATGAAACGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

228

Amino Acids

25.4

Weight (kDa)

5.02

Isoelectric Point (pI)

57.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38895 AT5G38895 AT5G38895
fragaria_vesca	FvH4_6g46360 FvH4_6g46360
malus_domestica	MD09G1074400.v1.1 MD17G1065800.v1.1
prunus_persica	Prupe.3G248900_v2.0.a1 Prupe.3G248900_v2.0.a1 Prupe.3G248900_v2.0.a1
pyrus_communis	pycom09g00150 pycom17g06610
rosa_chinensis	RchiOBHm_Chr2g0146111 RchiOBHm_Chr2g0164901
rosa_laevigata	RLG00000021495
rosa_multiflora	Rmu_sc0006207.1_g000009
rosa_roxburghii	Rroxscaffold_2G00086230
rosa_rugosa	Rorug02G0511100 Rorug02G0511200 Rorug02G0511200
rosa_samantha	Rh2AG579300 Rh2BG461500 Rh2BG590300 Rh2CG561000 Rh2DG470700 Rh2DG600700
rosa_wichuraiana	Rw2G048080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	122
AccII	CGCG	1 cut(s)	291
AciI	CCGC	1 cut(s)	310
AclWI	GGATC	1 cut(s)	151
AcsI	RAATTY	2 cut(s)	25, 34
AcuI	CTGAAG	1 cut(s)	86
AfaI	GTAC	1 cut(s)	391
AfiI	CCNNNNNNNGG	2 cut(s)	174, 650
AflIII	ACRYGT	2 cut(s)	225, 536
AgsI	TTSAA	3 cut(s)	25, 41, 545
AluBI	AGCT	2 cut(s)	479, 639
AluI	AGCT	2 cut(s)	479, 639
AlwI	GGATC	1 cut(s)	151
AlwNI	CAGNNNCTG	1 cut(s)	377
AoxI	GGCC	1 cut(s)	245
ApeKI	GCWGC	3 cut(s)	179, 286, 639
ApoI	RAATTY	2 cut(s)	25, 34
AspLEI	GCGC	1 cut(s)	291
AspS9I	GGNCC	1 cut(s)	246
AsuHPI	GGTGA	2 cut(s)	590, 670
BanII	GRGCYC	1 cut(s)	323
BbvCI	CCTCAGC	1 cut(s)	196
BbvI	GCAGC	3 cut(s)	166, 298, 626
BccI	CCATC	4 cut(s)	287, 419, 616, 655
BfaI	CTAG	1 cut(s)	306
BglI	GCCNNNNNGGC	1 cut(s)	244
BisI	GCNGC	3 cut(s)	180, 287, 640
BlsI	GCNGC	3 cut(s)	181, 288, 641
BmgT120I	GGNCC	1 cut(s)	246
BmsI	GCATC	4 cut(s)	191, 209, 250, 358
BplI	GAGNNNNNCTC	2 cut(s)	305, 337
Bpu10I	CCTNAGC	1 cut(s)	196
BpuEI	CTTGAG	1 cut(s)	307
BsaJI	CCNNGG	2 cut(s)	242, 601
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 650
Bse1I	ACTGG	1 cut(s)	490
BseDI	CCNNGG	2 cut(s)	242, 601
BseGI	GGATG	4 cut(s)	164, 506, 529, 627
BseLI	CCNNNNNNNGG	2 cut(s)	174, 650
BseMII	CTCAG	3 cut(s)	21, 210, 525
BseNI	ACTGG	1 cut(s)	490
BseRI	GAGGAG	2 cut(s)	184, 353
BseXI	GCAGC	3 cut(s)	166, 298, 626
Bsh1236I	CGCG	1 cut(s)	291
BshFI	GGCC	1 cut(s)	247
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	2 cut(s)	174, 650
BsmFI	GGGAC	1 cut(s)	89
BsmI	GAATGC	1 cut(s)	151
BsnI	GGCC	1 cut(s)	247
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp143I	GATC	1 cut(s)	156
BspACI	CCGC	1 cut(s)	310
BspANI	GGCC	1 cut(s)	247
BspCNI	CTCAG	3 cut(s)	22, 209, 524
BspFNI	CGCG	1 cut(s)	291
BspHI	TCATGA	1 cut(s)	334
BspPI	GGATC	1 cut(s)	151
BsrI	ACTGG	1 cut(s)	490
BssECI	CCNNGG	2 cut(s)	242, 601
BssMI	GATC	1 cut(s)	156
BssNAI	GTATAC	1 cut(s)	123
BssT1I	CCWWGG	2 cut(s)	242, 601
Bst1107I	GTATAC	1 cut(s)	123
Bst4CI	ACNGT	2 cut(s)	62, 80
Bst6I	CTCTTC	1 cut(s)	133
BstC8I	GCNNGC	1 cut(s)	284
BstDEI	CTNAG	5 cut(s)	30, 89, 196, 353, 511
BstF5I	GGATG	4 cut(s)	164, 506, 529, 627
BstFNI	CGCG	1 cut(s)	291
BstHHI	GCGC	1 cut(s)	291
BstKTI	GATC	1 cut(s)	159
BstMBI	GATC	1 cut(s)	156
BstMWI	GCNNNNNNNGC	2 cut(s)	244, 288
BstNSI	RCATGY	2 cut(s)	229, 540
BstUI	CGCG	1 cut(s)	291
BstV1I	GCAGC	3 cut(s)	166, 298, 626
BstZ17I	GTATAC	1 cut(s)	123
BsuRI	GGCC	1 cut(s)	247
BtgZI	GCGATG	1 cut(s)	306
BtsCI	GGATG	4 cut(s)	164, 506, 529, 627
Cac8I	GCNNGC	1 cut(s)	284
CaiI	CAGNNNCTG	1 cut(s)	377
CciI	TCATGA	1 cut(s)	334
CfoI	GCGC	1 cut(s)	291
Cfr13I	GGNCC	1 cut(s)	246
Csp6I	GTAC	1 cut(s)	390
CviAII	CATG	3 cut(s)	226, 335, 537
CviJI	RGCY	7 cut(s)	179, 247, 321, 344, 411, 479, 639
CviKI_1	RGCY	7 cut(s)	179, 247, 321, 344, 411, 479, 639
CviQI	GTAC	1 cut(s)	390
DdeI	CTNAG	5 cut(s)	30, 89, 196, 353, 511
DpnI	GATC	1 cut(s)	158
DpnII	GATC	1 cut(s)	156
Eam1104I	CTCTTC	1 cut(s)	133
EarI	CTCTTC	1 cut(s)	133
Eco130I	CCWWGG	2 cut(s)	242, 601
Eco24I	GRGCYC	1 cut(s)	323
Eco57I	CTGAAG	1 cut(s)	86
EcoO109I	RGGNCCY	1 cut(s)	246
EcoRI	GAATTC	1 cut(s)	25
EcoT14I	CCWWGG	2 cut(s)	242, 601
EcoT38I	GRGCYC	1 cut(s)	323
ErhI	CCWWGG	2 cut(s)	242, 601
FaeI	CATG	3 cut(s)	229, 338, 540
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	3 cut(s)	225, 334, 536
FauI	CCCGC	1 cut(s)	303
FblI	GTMKAC	1 cut(s)	122
Fnu4HI	GCNGC	3 cut(s)	180, 287, 640
FokI	GGATG	4 cut(s)	151, 493, 536, 634
FriOI	GRGCYC	1 cut(s)	323
Fsp4HI	GCNGC	3 cut(s)	180, 287, 640
FspBI	CTAG	1 cut(s)	306
GlaI	GCGC	1 cut(s)	290
GluI	GCNGC	3 cut(s)	180, 287, 640
HaeIII	GGCC	1 cut(s)	247
HhaI	GCGC	1 cut(s)	291
Hin1II	CATG	3 cut(s)	229, 338, 540
Hin6I	GCGC	1 cut(s)	289
HinP1I	GCGC	1 cut(s)	289
HinfI	GANTC	2 cut(s)	52, 374
HphI	GGTGA	2 cut(s)	590, 670
Hpy166II	GTNNAC	1 cut(s)	123
Hpy188I	TCNGA	7 cut(s)	31, 57, 105, 137, 223, 379, 514
Hpy188III	TCNNGA	2 cut(s)	335, 542
Hpy8I	GTNNAC	1 cut(s)	123
HpyAV	CCTTC	1 cut(s)	310
HpyCH4III	ACNGT	2 cut(s)	62, 80
HpyCH4V	TGCA	5 cut(s)	68, 151, 182, 286, 371
HpyF10VI	GCNNNNNNNGC	2 cut(s)	244, 288
HpyF3I	CTNAG	5 cut(s)	30, 89, 196, 353, 511
Hsp92II	CATG	3 cut(s)	229, 338, 540
HspAI	GCGC	1 cut(s)	289
Kzo9I	GATC	1 cut(s)	156
LpnPI	CCDG	6 cut(s)	97, 158, 283, 378, 471, 657
Lsp1109I	GCAGC	3 cut(s)	166, 298, 626
LweI	GCATC	4 cut(s)	191, 209, 250, 358
MaeI	CTAG	1 cut(s)	306
MaeIII	GTNAC	1 cut(s)	326
MalI	GATC	1 cut(s)	158
MboI	GATC	1 cut(s)	156
MboII	GAAGA	5 cut(s)	53, 92, 150, 434, 557
MhlI	GDGCHC	1 cut(s)	323
MluCI	AATT	3 cut(s)	25, 34, 489
MmeI	TCCRAC	1 cut(s)	557
MseI	TTAA	1 cut(s)	682
MslI	CAYNNNNRTG	1 cut(s)	333
Mva1269I	GAATGC	1 cut(s)	151
MvnI	CGCG	1 cut(s)	291
MwoI	GCNNNNNNNGC	2 cut(s)	244, 288
NdeII	GATC	1 cut(s)	156
NlaIII	CATG	3 cut(s)	229, 338, 540
NmuCI	GTSAC	1 cut(s)	326
NspI	RCATGY	2 cut(s)	229, 540
PagI	TCATGA	1 cut(s)	334
PciI	ACATGT	2 cut(s)	225, 536
PctI	GAATGC	1 cut(s)	151
PfeI	GAWTC	2 cut(s)	52, 374
PkrI	GCNGC	3 cut(s)	181, 288, 641
PscI	ACATGT	2 cut(s)	225, 536
PspPI	GGNCC	1 cut(s)	246
PstNI	CAGNNNCTG	1 cut(s)	377
RsaI	GTAC	1 cut(s)	391
RsaNI	GTAC	1 cut(s)	390
RseI	CAYNNNNRTG	1 cut(s)	333
SaqAI	TTAA	1 cut(s)	682
SatI	GCNGC	3 cut(s)	180, 287, 640
Sau3AI	GATC	1 cut(s)	156
Sau96I	GGNCC	1 cut(s)	246
SduI	GDGCHC	1 cut(s)	323
SetI	ASST	5 cut(s)	352, 481, 603, 641, 660
SfaNI	GCATC	4 cut(s)	191, 209, 250, 358
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	1 cut(s)	322
SmoI	CTYRAG	1 cut(s)	322
Sse9I	AATT	3 cut(s)	25, 34, 489
SsiI	CCGC	1 cut(s)	310
SspMI	CTAG	1 cut(s)	306
StyI	CCWWGG	2 cut(s)	242, 601
TaaI	ACNGT	2 cut(s)	62, 80
TaqI	TCGA	2 cut(s)	155, 669
TasI	AATT	3 cut(s)	25, 34, 489
TatI	WGTACW	1 cut(s)	389
TfiI	GAWTC	2 cut(s)	52, 374
Tru1I	TTAA	1 cut(s)	682
Tru9I	TTAA	1 cut(s)	682
TseFI	GTSAC	1 cut(s)	326
TseI	GCWGC	3 cut(s)	179, 286, 639
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	3 cut(s)	203, 473, 495
XapI	RAATTY	2 cut(s)	25, 34
XceI	RCATGY	2 cut(s)	229, 540
XmiI	GTMKAC	1 cut(s)	122
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.