Protein RIK isoform X1
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G29390 AT3G29390 |
| fragaria_vesca | FvH4_6g46910 FvH4_6g46910 FvH4_6g46910 FvH4_6g46910 |
| malus_domestica | MD09G1066300.v1.1 MD09G1066400.v1.1 |
| prunus_persica | Prupe.3G255200_v2.0.a1 Prupe.3G255200_v2.0.a1 |
| pyrus_communis | pycom111g05570 |
| rosa_chinensis | RchiOBHm_Chr2g0165881 |
| rosa_laevigata | RLG00000021564 |
| rosa_multiflora | Rmu_co8354311.1_g000001 Rmu_sc0001982.1_g000006 Rmu_sc0006218.1_g000001 Rmu_sc0006218.1_g000002 Rmu_sc0008709.1_g000009 Rmu_sc0013817.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00085390 |
| rosa_rugosa | Rorug02G0518600 Rorug02G0518700 Rorug02G0518800 Rorug05G0064400 Rorug05G0462700 |
| rosa_samantha | Rh2AG584500 Rh2BG596300 Rh2CG567200 Rh2DG606100 |
| rosa_wichuraiana | Rw2G048730 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 378 |
| Acc36I | ACCTGC | 2 cut(s) | 100, 949 |
| Acc65I | GGTACC | 1 cut(s) | 259 |
| AccB1I | GGYRCC | 2 cut(s) | 259, 625 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 197 |
| AccI | GTMKAC | 1 cut(s) | 688 |
| AciI | CCGC | 4 cut(s) | 272, 983, 1417, 1595 |
| AclWI | GGATC | 3 cut(s) | 93, 403, 656 |
| AcoI | YGGCCR | 1 cut(s) | 1635 |
| AcsI | RAATTY | 1 cut(s) | 1610 |
| AfaI | GTAC | 3 cut(s) | 261, 1203, 1444 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 197, 400, 958, 1058 |
| AflIII | ACRYGT | 1 cut(s) | 1627 |
| AgsI | TTSAA | 5 cut(s) | 308, 575, 840, 851, 1360 |
| AjnI | CCWGG | 4 cut(s) | 127, 178, 911, 1141 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AleI | CACNNNNGTG | 1 cut(s) | 638 |
| AluBI | AGCT | 8 cut(s) | 113, 382, 805, 1073, 1227, 1532, 1678, 1760 |
| AluI | AGCT | 8 cut(s) | 113, 382, 805, 1073, 1227, 1532, 1678, 1760 |
| Alw21I | GWGCWC | 1 cut(s) | 205 |
| Alw26I | GTCTC | 3 cut(s) | 369, 521, 913 |
| AlwI | GGATC | 3 cut(s) | 93, 403, 656 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 128, 179, 197, 1465 |
| AoxI | GGCC | 2 cut(s) | 695, 1635 |
| ApeKI | GCWGC | 4 cut(s) | 95, 560, 563, 680 |
| ApoI | RAATTY | 1 cut(s) | 1610 |
| AseI | ATTAAT | 1 cut(s) | 302 |
| Asp718I | GGTACC | 1 cut(s) | 259 |
| AspLEI | GCGC | 2 cut(s) | 20, 1339 |
| AspS9I | GGNCC | 2 cut(s) | 695, 1546 |
| AsuHPI | GGTGA | 4 cut(s) | 445, 491, 1606, 1703 |
| AvaII | GGWCC | 1 cut(s) | 1546 |
| BaeGI | GKGCMC | 1 cut(s) | 42 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1656, 1689 |
| BalI | TGGCCA | 1 cut(s) | 1637 |
| BanI | GGYRCC | 2 cut(s) | 259, 625 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 789, 821 |
| BauI | CACGAG | 1 cut(s) | 336 |
| Bbv12I | GWGCWC | 1 cut(s) | 205 |
| BbvI | GCAGC | 4 cut(s) | 107, 547, 550, 667 |
| BccI | CCATC | 5 cut(s) | 158, 248, 470, 1464, 1675 |
| BceAI | ACGGC | 1 cut(s) | 639 |
| BciT130I | CCWGG | 4 cut(s) | 129, 180, 913, 1143 |
| BciVI | GTATCC | 2 cut(s) | 877, 1229 |
| BcoDI | GTCTC | 3 cut(s) | 369, 521, 913 |
| BfaI | CTAG | 4 cut(s) | 21, 228, 1584, 1737 |
| BfmI | CTRYAG | 3 cut(s) | 93, 507, 1314 |
| BfoI | RGCGCY | 2 cut(s) | 21, 1340 |
| BfuAI | ACCTGC | 2 cut(s) | 100, 949 |
| BfuI | GTATCC | 2 cut(s) | 877, 1229 |
| BisI | GCNGC | 5 cut(s) | 96, 561, 564, 681, 1595 |
| BlsI | GCNGC | 5 cut(s) | 97, 562, 565, 682, 1596 |
| Bme1390I | CCNGG | 4 cut(s) | 129, 180, 913, 1143 |
| Bme18I | GGWCC | 1 cut(s) | 1546 |
| BmgT120I | GGNCC | 2 cut(s) | 695, 1546 |
| BmiI | GGNNCC | 3 cut(s) | 261, 627, 1096 |
| BmrFI | CCNGG | 4 cut(s) | 129, 180, 913, 1143 |
| BmsI | GCATC | 8 cut(s) | 37, 107, 346, 407, 476, 844, 994, 1565 |
| BpmI | CTGGAG | 4 cut(s) | 174, 895, 1020, 1164 |
| BpuEI | CTTGAG | 4 cut(s) | 242, 797, 1107, 1239 |
| BsaAI | YACGTR | 1 cut(s) | 692 |
| BsaJI | CCNNGG | 4 cut(s) | 128, 285, 567, 912 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 729, 759, 1057, 1087, 1306, 1336 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 197, 400, 958, 1058 |
| Bse1I | ACTGG | 5 cut(s) | 191, 202, 427, 706, 1470 |
| Bse3DI | GCAATG | 2 cut(s) | 675, 809 |
| BseBI | CCWGG | 4 cut(s) | 129, 180, 913, 1143 |
| BseDI | CCNNGG | 4 cut(s) | 128, 285, 567, 912 |
| BseGI | GGATG | 5 cut(s) | 40, 240, 291, 1298, 1702 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 197, 400, 958, 1058 |
| BseMI | GCAATG | 2 cut(s) | 675, 809 |
| BseMII | CTCAG | 4 cut(s) | 260, 766, 1374, 1701 |
| BseNI | ACTGG | 5 cut(s) | 191, 202, 427, 706, 1470 |
| BseRI | GAGGAG | 1 cut(s) | 419 |
| BseSI | GKGCMC | 1 cut(s) | 42 |
| BseXI | GCAGC | 4 cut(s) | 107, 547, 550, 667 |
| BsgI | GTGCAG | 1 cut(s) | 1770 |
| BshFI | GGCC | 2 cut(s) | 697, 1637 |
| BshNI | GGYRCC | 2 cut(s) | 259, 625 |
| BsiHKAI | GWGCWC | 1 cut(s) | 205 |
| BsiSI | CCGG | 1 cut(s) | 1076 |
| BslFI | GGGAC | 1 cut(s) | 1643 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 197, 400, 958, 1058 |
| BsmAI | GTCTC | 3 cut(s) | 369, 521, 913 |
| BsmFI | GGGAC | 1 cut(s) | 1643 |
| BsmI | GAATGC | 1 cut(s) | 1572 |
| BsnI | GGCC | 2 cut(s) | 697, 1637 |
| Bsp1286I | GDGCHC | 2 cut(s) | 42, 205 |
| Bsp143I | GATC | 4 cut(s) | 85, 408, 661, 1397 |
| Bsp19I | CCATGG | 1 cut(s) | 567 |
| BspACI | CCGC | 4 cut(s) | 272, 983, 1417, 1595 |
| BspANI | GGCC | 2 cut(s) | 697, 1637 |
| BspCNI | CTCAG | 4 cut(s) | 259, 765, 1375, 1702 |
| BspLI | GGNNCC | 3 cut(s) | 261, 627, 1096 |
| BspMAI | CTGCAG | 2 cut(s) | 97, 511 |
| BspMI | ACCTGC | 2 cut(s) | 100, 949 |
| BspPI | GGATC | 3 cut(s) | 93, 403, 656 |
| BspT107I | GGYRCC | 2 cut(s) | 259, 625 |
| BsrDI | GCAATG | 2 cut(s) | 675, 809 |
| BsrI | ACTGG | 5 cut(s) | 191, 202, 427, 706, 1470 |
| BssECI | CCNNGG | 4 cut(s) | 128, 285, 567, 912 |
| BssMI | GATC | 4 cut(s) | 85, 408, 661, 1397 |
| BssNAI | GTATAC | 1 cut(s) | 689 |
| BssSI | CACGAG | 1 cut(s) | 336 |
| BssT1I | CCWWGG | 1 cut(s) | 567 |
| Bst1107I | GTATAC | 1 cut(s) | 689 |
| Bst2BI | CACGAG | 1 cut(s) | 336 |
| Bst2UI | CCWGG | 4 cut(s) | 129, 180, 913, 1143 |
| Bst6I | CTCTTC | 1 cut(s) | 1315 |
| BstBAI | YACGTR | 1 cut(s) | 692 |
| BstC8I | GCNNGC | 2 cut(s) | 1530, 1554 |
| BstDEI | CTNAG | 6 cut(s) | 246, 752, 927, 1289, 1383, 1710 |
| BstDSI | CCRYGG | 2 cut(s) | 285, 567 |
| BstF5I | GGATG | 5 cut(s) | 40, 240, 291, 1298, 1702 |
| BstH2I | RGCGCY | 2 cut(s) | 21, 1340 |
| BstHHI | GCGC | 2 cut(s) | 20, 1339 |
| BstKTI | GATC | 4 cut(s) | 88, 411, 664, 1400 |
| BstMAI | GTCTC | 3 cut(s) | 369, 521, 913 |
| BstMBI | GATC | 4 cut(s) | 85, 408, 661, 1397 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 119, 811, 1070, 1757 |
| BstNI | CCWGG | 4 cut(s) | 129, 180, 913, 1143 |
| BstSCI | CCNGG | 4 cut(s) | 127, 178, 911, 1141 |
| BstSFI | CTRYAG | 3 cut(s) | 93, 507, 1314 |
| BstSLI | GKGCMC | 1 cut(s) | 42 |
| BstV1I | GCAGC | 4 cut(s) | 107, 547, 550, 667 |
| BstX2I | RGATCY | 2 cut(s) | 408, 661 |
| BstYI | RGATCY | 2 cut(s) | 408, 661 |
| BstZ17I | GTATAC | 1 cut(s) | 689 |
| BsuI | GTATCC | 2 cut(s) | 877, 1229 |
| BsuRI | GGCC | 2 cut(s) | 697, 1637 |
| BtgI | CCRYGG | 2 cut(s) | 285, 567 |
| BtsCI | GGATG | 5 cut(s) | 40, 240, 291, 1298, 1702 |
| BtsI | GCAGTG | 2 cut(s) | 129, 1758 |
| BtsIMutI | CAGTG | 6 cut(s) | 129, 198, 420, 898, 1344, 1758 |
| BveI | ACCTGC | 2 cut(s) | 100, 949 |
| Cac8I | GCNNGC | 2 cut(s) | 1530, 1554 |
| CaiI | CAGNNNCTG | 4 cut(s) | 128, 179, 197, 1465 |
| CfoI | GCGC | 2 cut(s) | 20, 1339 |
| Cfr13I | GGNCC | 2 cut(s) | 695, 1546 |
| CseI | GACGC | 1 cut(s) | 665 |
| Csp6I | GTAC | 3 cut(s) | 260, 1202, 1443 |
| CviAII | CATG | 2 cut(s) | 568, 669 |
| CviQI | GTAC | 3 cut(s) | 260, 1202, 1443 |
| DdeI | CTNAG | 6 cut(s) | 246, 752, 927, 1289, 1383, 1710 |
| DpnI | GATC | 4 cut(s) | 87, 410, 663, 1399 |
| DpnII | GATC | 4 cut(s) | 85, 408, 661, 1397 |
| DraI | TTTAAA | 1 cut(s) | 522 |
| EaeI | YGGCCR | 1 cut(s) | 1635 |
| Eam1104I | CTCTTC | 1 cut(s) | 1315 |
| EarI | CTCTTC | 1 cut(s) | 1315 |
| EciI | GGCGGA | 1 cut(s) | 1432 |
| Eco130I | CCWWGG | 1 cut(s) | 567 |
| Eco47I | GGWCC | 1 cut(s) | 1546 |
| EcoRII | CCWGG | 4 cut(s) | 127, 178, 911, 1141 |
| EcoT14I | CCWWGG | 1 cut(s) | 567 |
| EcoT22I | ATGCAT | 1 cut(s) | 469 |
| ErhI | CCWWGG | 1 cut(s) | 567 |
| FaeI | CATG | 2 cut(s) | 571, 672 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1266, 1298 |
| FaqI | GGGAC | 1 cut(s) | 1643 |
| FatI | CATG | 2 cut(s) | 567, 668 |
| FblI | GTMKAC | 1 cut(s) | 688 |
| Fnu4HI | GCNGC | 5 cut(s) | 96, 561, 564, 681, 1595 |
| FokI | GGATG | 5 cut(s) | 47, 227, 278, 1285, 1709 |
| Fsp4HI | GCNGC | 5 cut(s) | 96, 561, 564, 681, 1595 |
| FspBI | CTAG | 4 cut(s) | 21, 228, 1584, 1737 |
| GlaI | GCGC | 2 cut(s) | 19, 1338 |
| GluI | GCNGC | 5 cut(s) | 96, 561, 564, 681, 1595 |
| GsuI | CTGGAG | 4 cut(s) | 174, 895, 1020, 1164 |
| HaeII | RGCGCY | 2 cut(s) | 21, 1340 |
| HaeIII | GGCC | 2 cut(s) | 697, 1637 |
| HapII | CCGG | 1 cut(s) | 1076 |
| HgaI | GACGC | 1 cut(s) | 665 |
| HhaI | GCGC | 2 cut(s) | 20, 1339 |
| Hin1II | CATG | 2 cut(s) | 571, 672 |
| Hin6I | GCGC | 2 cut(s) | 18, 1337 |
| HinP1I | GCGC | 2 cut(s) | 18, 1337 |
| HincII | GTYRAC | 2 cut(s) | 553, 1366 |
| HindII | GTYRAC | 2 cut(s) | 553, 1366 |
| HinfI | GANTC | 4 cut(s) | 214, 362, 598, 1706 |
| HpaI | GTTAAC | 1 cut(s) | 1366 |
| HpaII | CCGG | 1 cut(s) | 1076 |
| HphI | GGTGA | 4 cut(s) | 445, 491, 1606, 1703 |
| Hpy166II | GTNNAC | 4 cut(s) | 458, 553, 689, 1366 |
| Hpy188III | TCNNGA | 6 cut(s) | 768, 776, 848, 1014, 1427, 1460 |
| Hpy8I | GTNNAC | 4 cut(s) | 458, 553, 689, 1366 |
| HpyAV | CCTTC | 2 cut(s) | 791, 1381 |
| HpyCH4IV | ACGT | 2 cut(s) | 691, 1629 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 119, 811, 1070, 1757 |
| HpyF3I | CTNAG | 6 cut(s) | 246, 752, 927, 1289, 1383, 1710 |
| HpySE526I | ACGT | 2 cut(s) | 691, 1629 |
| Hsp92II | CATG | 2 cut(s) | 571, 672 |
| HspAI | GCGC | 2 cut(s) | 18, 1337 |
| KpnI | GGTACC | 1 cut(s) | 263 |
| KspAI | GTTAAC | 1 cut(s) | 1366 |
| Kzo9I | GATC | 4 cut(s) | 85, 408, 661, 1397 |
| LmnI | GCTCC | 5 cut(s) | 672, 737, 1078, 1327, 1537 |
| Lsp1109I | GCAGC | 4 cut(s) | 107, 547, 550, 667 |
| LweI | GCATC | 8 cut(s) | 37, 107, 346, 407, 476, 844, 994, 1565 |
| MaeI | CTAG | 4 cut(s) | 21, 228, 1584, 1737 |
| MaeII | ACGT | 2 cut(s) | 691, 1629 |
| MaeIII | GTNAC | 7 cut(s) | 184, 193, 747, 1258, 1407, 1431, 1753 |
| MalI | GATC | 4 cut(s) | 87, 410, 663, 1399 |
| MboI | GATC | 4 cut(s) | 85, 408, 661, 1397 |
| MboII | GAAGA | 8 cut(s) | 20, 82, 488, 587, 806, 863, 1302, 1736 |
| MfeI | CAATTG | 1 cut(s) | 1437 |
| MflI | RGATCY | 2 cut(s) | 408, 661 |
| MhlI | GDGCHC | 2 cut(s) | 42, 205 |
| MlsI | TGGCCA | 1 cut(s) | 1637 |
| MluNI | TGGCCA | 1 cut(s) | 1637 |
| MlyI | GAGTC | 2 cut(s) | 371, 1700 |
| MmeI | TCCRAC | 3 cut(s) | 626, 1072, 1076 |
| Mox20I | TGGCCA | 1 cut(s) | 1637 |
| Mph1103I | ATGCAT | 1 cut(s) | 469 |
| MscI | TGGCCA | 1 cut(s) | 1637 |
| MseI | TTAA | 5 cut(s) | 302, 329, 521, 1154, 1365 |
| MslI | CAYNNNNRTG | 1 cut(s) | 638 |
| Msp20I | TGGCCA | 1 cut(s) | 1637 |
| MspA1I | CMGCKG | 1 cut(s) | 113 |
| MspI | CCGG | 1 cut(s) | 1076 |
| MspR9I | CCNGG | 4 cut(s) | 129, 180, 913, 1143 |
| MunI | CAATTG | 1 cut(s) | 1437 |
| Mva1269I | GAATGC | 1 cut(s) | 1572 |
| MvaI | CCWGG | 4 cut(s) | 129, 180, 913, 1143 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 119, 811, 1070, 1757 |
| NcoI | CCATGG | 1 cut(s) | 567 |
| NdeII | GATC | 4 cut(s) | 85, 408, 661, 1397 |
| NlaIII | CATG | 2 cut(s) | 571, 672 |
| NlaIV | GGNNCC | 3 cut(s) | 261, 627, 1096 |
| NmuCI | GTSAC | 5 cut(s) | 193, 747, 1258, 1407, 1753 |
| NsiI | ATGCAT | 1 cut(s) | 469 |
| OliI | CACNNNNGTG | 1 cut(s) | 638 |
| PctI | GAATGC | 1 cut(s) | 1572 |
| PfeI | GAWTC | 2 cut(s) | 214, 598 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 197 |
| PkrI | GCNGC | 5 cut(s) | 97, 562, 565, 682, 1596 |
| PleI | GAGTC | 2 cut(s) | 370, 1700 |
| PpsI | GAGTC | 2 cut(s) | 370, 1700 |
| Ppu21I | YACGTR | 1 cut(s) | 692 |
| PshBI | ATTAAT | 1 cut(s) | 302 |
| PsiI | TTATAA | 1 cut(s) | 378 |
| Psp6I | CCWGG | 4 cut(s) | 127, 178, 911, 1141 |
| PspGI | CCWGG | 4 cut(s) | 127, 178, 911, 1141 |
| PspN4I | GGNNCC | 3 cut(s) | 261, 627, 1096 |
| PspPI | GGNCC | 2 cut(s) | 695, 1546 |
| PstI | CTGCAG | 2 cut(s) | 97, 511 |
| PstNI | CAGNNNCTG | 4 cut(s) | 128, 179, 197, 1465 |
| PsuI | RGATCY | 2 cut(s) | 408, 661 |
| PvuII | CAGCTG | 1 cut(s) | 113 |
| RsaI | GTAC | 3 cut(s) | 261, 1203, 1444 |
| RsaNI | GTAC | 3 cut(s) | 260, 1202, 1443 |
| RseI | CAYNNNNRTG | 1 cut(s) | 638 |
| SaqAI | TTAA | 5 cut(s) | 302, 329, 521, 1154, 1365 |
| SatI | GCNGC | 5 cut(s) | 96, 561, 564, 681, 1595 |
| Sau3AI | GATC | 4 cut(s) | 85, 408, 661, 1397 |
| Sau96I | GGNCC | 2 cut(s) | 695, 1546 |
| SchI | GAGTC | 2 cut(s) | 371, 1700 |
| ScrFI | CCNGG | 4 cut(s) | 129, 180, 913, 1143 |
| SduI | GDGCHC | 2 cut(s) | 42, 205 |
| SfaNI | GCATC | 8 cut(s) | 37, 107, 346, 407, 476, 844, 994, 1565 |
| SfcI | CTRYAG | 3 cut(s) | 93, 507, 1314 |
| SinI | GGWCC | 1 cut(s) | 1546 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 638 |
| SmlI | CTYRAG | 4 cut(s) | 221, 776, 1122, 1254 |
| SmoI | CTYRAG | 4 cut(s) | 221, 776, 1122, 1254 |
| SsiI | CCGC | 4 cut(s) | 272, 983, 1417, 1595 |
| SspMI | CTAG | 4 cut(s) | 21, 228, 1584, 1737 |
| StyD4I | CCNGG | 4 cut(s) | 127, 178, 911, 1141 |
| StyI | CCWWGG | 1 cut(s) | 567 |
| TaiI | ACGT | 2 cut(s) | 694, 1632 |
| TaqI | TCGA | 1 cut(s) | 1762 |
| TauI | GCSGC | 1 cut(s) | 1597 |
| TfiI | GAWTC | 2 cut(s) | 214, 598 |
| Tru1I | TTAA | 5 cut(s) | 302, 329, 521, 1154, 1365 |
| Tru9I | TTAA | 5 cut(s) | 302, 329, 521, 1154, 1365 |
| TscAI | CASTG | 6 cut(s) | 129, 198, 427, 898, 1351, 1758 |
| TseFI | GTSAC | 5 cut(s) | 193, 747, 1258, 1407, 1753 |
| TseI | GCWGC | 4 cut(s) | 95, 560, 563, 680 |
| Tsp45I | GTSAC | 5 cut(s) | 193, 747, 1258, 1407, 1753 |
| TspDTI | ATGAA | 6 cut(s) | 227, 488, 740, 744, 909, 1500 |
| TspGWI | ACGGA | 3 cut(s) | 553, 630, 654 |
| TspRI | CASTG | 6 cut(s) | 129, 198, 427, 898, 1351, 1758 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 197 |
| VpaK11BI | GGWCC | 1 cut(s) | 1546 |
| VspI | ATTAAT | 1 cut(s) | 302 |
| XapI | RAATTY | 1 cut(s) | 1610 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 419 |
| XmiI | GTMKAC | 1 cut(s) | 688 |
| XspI | CTAG | 4 cut(s) | 21, 228, 1584, 1737 |
| Zsp2I | ATGCAT | 1 cut(s) | 469 |