Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006218.1

Orthogroup ID

OG0005118

Physical Location & Seq

Genomic Coordinates Forward (+)

3545 .. 7958

Gene Structure 4414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006218.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atgaaagtttgggaatacagggtttcttcatctaaggtttatagtgctattgcacccccacagcaggtatatagtgctgttcctccaccacatcagttgtcggctggagttcagagttctggaaatgaggtaaaggccattacaactttggcgtctgcaactgtcggtcttacaccagctcccccagtttcctcagttgggactcctgtgaccactaccatttttactcaagggacagtatctcagtctggaggattttcaaacggtgtgcaatctcaggcaagcagtggtggttgtccacaacttccatctggtggaactatctacagtggatatggtgggatatatcctcaagtcacacctttacaacaagttgccctggcccttagacagtcaacatcccctatcacttctacaattgctcccacaacatcagtcccaagcactgaaccaaagttgaatacgaaattcagttctgattctgagaaggaaaaacggcctccacaaagacggaagtttcaggagttaccagttagttcgaagggtcctgccaaagttcatcagtgtctgatcattgggcacacatttgtagagctcgtgaagaacttgtcatcgcttacaaagcatattgtgaagcaagaggagctcactatgtggaacaagaagatcaagaagatgattagaatgaagggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

231

Amino Acids

24.59

Weight (kDa)

9.94

Isoelectric Point (pI)

61.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29390 AT3G29390
fragaria_vesca	FvH4_6g46910 FvH4_6g46910 FvH4_6g46910 FvH4_6g46910
malus_domestica	MD09G1066300.v1.1 MD09G1066400.v1.1
prunus_persica	Prupe.3G255200_v2.0.a1 Prupe.3G255200_v2.0.a1
pyrus_communis	pycom111g05570
rosa_chinensis	RchiOBHm_Chr2g0165881
rosa_laevigata	RLG00000021564
rosa_multiflora	Rmu_co8354311.1_g000001 Rmu_sc0001982.1_g000006 Rmu_sc0006218.1_g000001 Rmu_sc0006218.1_g000002 Rmu_sc0008709.1_g000009 Rmu_sc0013817.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085390
rosa_rugosa	Rorug02G0518600 Rorug02G0518700 Rorug02G0518800 Rorug05G0064400 Rorug05G0462700
rosa_samantha	Rh2AG584500 Rh2BG596300 Rh2CG567200 Rh2DG606100
rosa_wichuraiana	Rw2G048730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	55
AccB7I	CCANNNNNTGG	1 cut(s)	314
AcsI	RAATTY	1 cut(s)	467
AcyI	GRCGYC	1 cut(s)	152
AdeI	CACNNNGTG	1 cut(s)	654
AfiI	CCNNNNNNNGG	3 cut(s)	64, 198, 314
AgsI	TTSAA	2 cut(s)	261, 460
AjnI	CCWGG	1 cut(s)	378
AluBI	AGCT	3 cut(s)	179, 595, 646
AluI	AGCT	3 cut(s)	179, 595, 646
Alw21I	GWGCWC	2 cut(s)	597, 648
AlwNI	CAGNNNCTG	1 cut(s)	568
AoxI	GGCC	3 cut(s)	135, 381, 497
ApoI	RAATTY	1 cut(s)	467
AspS9I	GGNCC	2 cut(s)	382, 545
AsuII	TTCGAA	1 cut(s)	539
AvaII	GGWCC	1 cut(s)	545
BaeGI	GKGCMC	1 cut(s)	582
BanII	GRGCYC	2 cut(s)	597, 648
BauI	CACGAG	1 cut(s)	596
Bbv12I	GWGCWC	2 cut(s)	597, 648
BccI	CCATC	1 cut(s)	316
BceAI	ACGGC	1 cut(s)	512
BciT130I	CCWGG	1 cut(s)	380
BclI	TGATCA	1 cut(s)	570
BfmI	CTRYAG	1 cut(s)	325
BfuAI	ACCTGC	1 cut(s)	55
Bme1390I	CCNGG	1 cut(s)	380
Bme18I	GGWCC	1 cut(s)	545
BmgT120I	GGNCC	2 cut(s)	382, 545
BmiI	GGNNCC	1 cut(s)	546
BmrFI	CCNGG	1 cut(s)	380
BmrI	ACTGGG	1 cut(s)	179
BmuI	ACTGGG	1 cut(s)	179
BpmI	CTGGAG	2 cut(s)	126, 270
Bpu14I	TTCGAA	1 cut(s)	539
BpuEI	CTTGAG	2 cut(s)	213, 336
BsaHI	GRCGYC	1 cut(s)	152
BsaJI	CCNNGG	1 cut(s)	378
BsaXI	ACNNNNNCTCC	4 cut(s)	163, 193, 406, 436
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 198, 314
Bse1I	ACTGG	2 cut(s)	185, 530
BseBI	CCWGG	1 cut(s)	380
BseDI	CCNNGG	1 cut(s)	378
BseGI	GGATG	1 cut(s)	398
BseLI	CCNNNNNNNGG	3 cut(s)	64, 198, 314
BseMII	CTCAG	4 cut(s)	207, 257, 290, 474
BseNI	ACTGG	2 cut(s)	185, 530
BseRI	GAGGAG	1 cut(s)	656
BseSI	GKGCMC	1 cut(s)	582
BshFI	GGCC	3 cut(s)	137, 383, 499
BsiHKAI	GWGCWC	2 cut(s)	597, 648
BslFI	GGGAC	3 cut(s)	214, 247, 422
BslI	CCNNNNNNNGG	3 cut(s)	64, 198, 314
BsmFI	GGGAC	3 cut(s)	214, 247, 422
BsnI	GGCC	3 cut(s)	137, 383, 499
Bsp119I	TTCGAA	1 cut(s)	539
Bsp1286I	GDGCHC	3 cut(s)	582, 597, 648
Bsp143I	GATC	2 cut(s)	570, 666
BspANI	GGCC	3 cut(s)	137, 383, 499
BspCNI	CTCAG	4 cut(s)	206, 256, 289, 475
BspLI	GGNNCC	1 cut(s)	546
BspMI	ACCTGC	1 cut(s)	55
BspT104I	TTCGAA	1 cut(s)	539
BsrI	ACTGG	2 cut(s)	185, 530
BssECI	CCNNGG	1 cut(s)	378
BssMI	GATC	2 cut(s)	570, 666
BssNI	GRCGYC	1 cut(s)	152
BssSI	CACGAG	1 cut(s)	596
Bst2BI	CACGAG	1 cut(s)	596
Bst2UI	CCWGG	1 cut(s)	380
Bst4CI	ACNGT	5 cut(s)	163, 238, 266, 329, 393
BstACI	GRCGYC	1 cut(s)	152
BstBI	TTCGAA	1 cut(s)	539
BstC8I	GCNNGC	1 cut(s)	283
BstDEI	CTNAG	6 cut(s)	33, 193, 243, 276, 386, 483
BstF5I	GGATG	1 cut(s)	398
BstKTI	GATC	2 cut(s)	573, 669
BstMBI	GATC	2 cut(s)	570, 666
BstMWI	GCNNNNNNNGC	2 cut(s)	622, 643
BstNI	CCWGG	1 cut(s)	380
BstSCI	CCNGG	1 cut(s)	378
BstSFI	CTRYAG	1 cut(s)	325
BstSLI	GKGCMC	1 cut(s)	582
BsuRI	GGCC	3 cut(s)	137, 383, 499
BtgZI	GCGATG	1 cut(s)	597
BtsCI	GGATG	1 cut(s)	398
BtsI	GCAGTG	1 cut(s)	292
BtsIMutI	CAGTG	4 cut(s)	292, 334, 444, 569
BveI	ACCTGC	1 cut(s)	55
Cac8I	GCNNGC	1 cut(s)	283
CaiI	CAGNNNCTG	1 cut(s)	568
Cfr13I	GGNCC	2 cut(s)	382, 545
CseI	GACGC	1 cut(s)	141
CspCI	CAANNNNNGTGG	2 cut(s)	78, 113
CviJI	RGCY	7 cut(s)	104, 137, 179, 383, 499, 595, 646
CviKI_1	RGCY	7 cut(s)	104, 137, 179, 383, 499, 595, 646
DdeI	CTNAG	6 cut(s)	33, 193, 243, 276, 386, 483
DpnI	GATC	2 cut(s)	572, 668
DpnII	GATC	2 cut(s)	570, 666
DraIII	CACNNNGTG	1 cut(s)	654
Ecl136II	GAGCTC	2 cut(s)	595, 646
Eco24I	GRGCYC	2 cut(s)	597, 648
Eco47I	GGWCC	1 cut(s)	545
Eco53kI	GAGCTC	2 cut(s)	595, 646
EcoICRI	GAGCTC	2 cut(s)	595, 646
EcoO109I	RGGNCCY	1 cut(s)	545
EcoRII	CCWGG	1 cut(s)	378
EcoT38I	GRGCYC	2 cut(s)	597, 648
FaiI	YATR	7 cut(s)	42, 70, 72, 336, 346, 627, 653
FaqI	GGGAC	3 cut(s)	214, 247, 422
FbaI	TGATCA	1 cut(s)	570
FokI	GGATG	1 cut(s)	385
FriOI	GRGCYC	2 cut(s)	597, 648
GsuI	CTGGAG	2 cut(s)	126, 270
HaeIII	GGCC	3 cut(s)	137, 383, 499
HgaI	GACGC	1 cut(s)	141
Hin1I	GRCGYC	1 cut(s)	152
HincII	GTYRAC	1 cut(s)	396
HindII	GTYRAC	1 cut(s)	396
HinfI	GANTC	2 cut(s)	202, 479
Hpy166II	GTNNAC	2 cut(s)	299, 396
Hpy188I	TCNGA	4 cut(s)	114, 478, 484, 570
Hpy188III	TCNNGA	5 cut(s)	120, 249, 521, 598, 670
Hpy8I	GTNNAC	2 cut(s)	299, 396
HpyAV	CCTTC	3 cut(s)	481, 535, 682
HpyCH4III	ACNGT	5 cut(s)	163, 238, 266, 329, 393
HpyCH4V	TGCA	3 cut(s)	53, 158, 271
HpyF10VI	GCNNNNNNNGC	2 cut(s)	622, 643
HpyF3I	CTNAG	6 cut(s)	33, 193, 243, 276, 386, 483
Hsp92I	GRCGYC	1 cut(s)	152
Ksp22I	TGATCA	1 cut(s)	570
Kzo9I	GATC	2 cut(s)	570, 666
LmnI	GCTCC	3 cut(s)	184, 427, 643
MaeIII	GTNAC	3 cut(s)	208, 355, 525
MalI	GATC	2 cut(s)	572, 668
MboI	GATC	2 cut(s)	570, 666
MboII	GAAGA	4 cut(s)	18, 613, 676, 685
MfeI	CAATTG	1 cut(s)	417
MhlI	GDGCHC	3 cut(s)	582, 597, 648
MluCI	AATT	2 cut(s)	417, 467
MlyI	GAGTC	1 cut(s)	196
MnlI	CCTC	7 cut(s)	93, 121, 202, 245, 360, 510, 634
MspR9I	CCNGG	1 cut(s)	380
MunI	CAATTG	1 cut(s)	417
MvaI	CCWGG	1 cut(s)	380
MwoI	GCNNNNNNNGC	2 cut(s)	622, 643
NdeII	GATC	2 cut(s)	570, 666
NlaIV	GGNNCC	1 cut(s)	546
NmuCI	GTSAC	2 cut(s)	208, 355
NspV	TTCGAA	1 cut(s)	539
PfeI	GAWTC	1 cut(s)	479
PflMI	CCANNNNNTGG	1 cut(s)	314
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
PpuMI	RGGWCCY	1 cut(s)	545
Psp124BI	GAGCTC	2 cut(s)	597, 648
Psp5II	RGGWCCY	1 cut(s)	545
Psp6I	CCWGG	1 cut(s)	378
PspGI	CCWGG	1 cut(s)	378
PspN4I	GGNNCC	1 cut(s)	546
PspPI	GGNCC	2 cut(s)	382, 545
PspPPI	RGGWCCY	1 cut(s)	545
PstNI	CAGNNNCTG	1 cut(s)	568
SacI	GAGCTC	2 cut(s)	597, 648
Sau3AI	GATC	2 cut(s)	570, 666
Sau96I	GGNCC	2 cut(s)	382, 545
SchI	GAGTC	1 cut(s)	196
ScrFI	CCNGG	1 cut(s)	380
SduI	GDGCHC	3 cut(s)	582, 597, 648
SetI	ASST	7 cut(s)	39, 69, 132, 181, 364, 597, 648
SfcI	CTRYAG	1 cut(s)	325
SfuI	TTCGAA	1 cut(s)	539
SinI	GGWCC	1 cut(s)	545
SmlI	CTYRAG	2 cut(s)	228, 351
SmoI	CTYRAG	2 cut(s)	228, 351
Sse9I	AATT	2 cut(s)	417, 467
SstI	GAGCTC	2 cut(s)	597, 648
StyD4I	CCNGG	1 cut(s)	378
TaaI	ACNGT	5 cut(s)	163, 238, 266, 329, 393
TaqI	TCGA	1 cut(s)	539
TaqII	GACCGA	1 cut(s)	155
TasI	AATT	2 cut(s)	417, 467
TfiI	GAWTC	1 cut(s)	479
TscAI	CASTG	4 cut(s)	292, 334, 451, 569
TseFI	GTSAC	2 cut(s)	208, 355
Tsp45I	GTSAC	2 cut(s)	208, 355
TspDTI	ATGAA	3 cut(s)	17, 18, 548
TspGWI	ACGGA	1 cut(s)	526
TspRI	CASTG	4 cut(s)	292, 334, 451, 569
Van91I	CCANNNNNTGG	1 cut(s)	314
VpaK11BI	GGWCC	1 cut(s)	545
XapI	RAATTY	1 cut(s)	467
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.