Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8354311.1

Orthogroup ID

OG0005118

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 998

Gene Structure 997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8354311.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ctggcccttagacagtcaacatcccctatcacttctacaattgctcccacaacatcagtcccaagcactgaaccaaagttgaatacgaaattcagttctgattctgagaaggaaaaacggcctccacaaagacggaagtttcaggagttaccagttagttcgaagggtcctgccaaagttcatcaggtattttctctgaccttctatgaggctaactggccgatactggacctctctattgggccattggtttctatttttcacagggaattggacttattaaagccacctgaactggcatcagatttgggtgtgagaaatgtatcaactatgccagctccaaagaaattgttccagcaggtttcaaatggaatgccgccaccgccacccagaaccatgcctccacctccaccaaaatttacatcatcaacacaggtt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

16.09

Weight (kDa)

9.99

Isoelectric Point (pI)

69.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29390 AT3G29390
fragaria_vesca	FvH4_6g46910 FvH4_6g46910 FvH4_6g46910 FvH4_6g46910
malus_domestica	MD09G1066300.v1.1 MD09G1066400.v1.1
prunus_persica	Prupe.3G255200_v2.0.a1 Prupe.3G255200_v2.0.a1
pyrus_communis	pycom111g05570
rosa_chinensis	RchiOBHm_Chr2g0165881
rosa_laevigata	RLG00000021564
rosa_multiflora	Rmu_co8354311.1_g000001 Rmu_sc0001982.1_g000006 Rmu_sc0006218.1_g000001 Rmu_sc0006218.1_g000002 Rmu_sc0008709.1_g000009 Rmu_sc0013817.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085390
rosa_rugosa	Rorug02G0518600 Rorug02G0518700 Rorug02G0518800 Rorug05G0064400 Rorug05G0462700
rosa_samantha	Rh2AG584500 Rh2BG596300 Rh2CG567200 Rh2DG606100
rosa_wichuraiana	Rw2G048730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	349
AciI	CCGC	2 cut(s)	377, 383
AcoI	YGGCCR	1 cut(s)	218
AcsI	RAATTY	2 cut(s)	89, 416
AgsI	TTSAA	2 cut(s)	82, 366
AloI	GAACNNNNNNTCC	2 cut(s)	385, 417
AluBI	AGCT	1 cut(s)	338
AluI	AGCT	1 cut(s)	338
AoxI	GGCC	4 cut(s)	3, 119, 218, 242
ApoI	RAATTY	2 cut(s)	89, 416
Asp700I	GAANNNNTTC	1 cut(s)	350
AspS9I	GGNCC	4 cut(s)	4, 167, 229, 242
AsuII	TTCGAA	1 cut(s)	161
AvaII	GGWCC	2 cut(s)	167, 229
BceAI	ACGGC	1 cut(s)	134
BfuAI	ACCTGC	1 cut(s)	349
BisI	GCNGC	1 cut(s)	377
BlsI	GCNGC	1 cut(s)	378
Bme18I	GGWCC	2 cut(s)	167, 229
BmgT120I	GGNCC	4 cut(s)	4, 167, 229, 242
BmiI	GGNNCC	1 cut(s)	168
BmsI	GCATC	1 cut(s)	308
Bpu14I	TTCGAA	1 cut(s)	161
BsaXI	ACNNNNNCTCC	4 cut(s)	28, 58, 385, 415
Bse1I	ACTGG	4 cut(s)	152, 221, 231, 300
BseGI	GGATG	1 cut(s)	20
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	4 cut(s)	152, 221, 231, 300
BshFI	GGCC	4 cut(s)	5, 121, 220, 244
BslFI	GGGAC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	44
BsmI	GAATGC	1 cut(s)	378
BsnI	GGCC	4 cut(s)	5, 121, 220, 244
Bsp119I	TTCGAA	1 cut(s)	161
BspACI	CCGC	2 cut(s)	377, 383
BspANI	GGCC	4 cut(s)	5, 121, 220, 244
BspCNI	CTCAG	1 cut(s)	97
BspLI	GGNNCC	1 cut(s)	168
BspMI	ACCTGC	1 cut(s)	349
BspT104I	TTCGAA	1 cut(s)	161
BsrI	ACTGG	4 cut(s)	152, 221, 231, 300
Bst4CI	ACNGT	1 cut(s)	15
BstBI	TTCGAA	1 cut(s)	161
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	2 cut(s)	8, 105
BstF5I	GGATG	1 cut(s)	20
BstMWI	GCNNNNNNNGC	1 cut(s)	382
BsuRI	GGCC	4 cut(s)	5, 121, 220, 244
BtsCI	GGATG	1 cut(s)	20
BtsIMutI	CAGTG	1 cut(s)	66
BveI	ACCTGC	1 cut(s)	349
Cac8I	GCNNGC	1 cut(s)	336
Cfr13I	GGNCC	4 cut(s)	4, 167, 229, 242
CviAII	CATG	1 cut(s)	397
CviJI	RGCY	7 cut(s)	5, 121, 212, 220, 244, 286, 338
CviKI_1	RGCY	7 cut(s)	5, 121, 212, 220, 244, 286, 338
DdeI	CTNAG	2 cut(s)	8, 105
EaeI	YGGCCR	1 cut(s)	218
Eco47I	GGWCC	2 cut(s)	167, 229
EcoO109I	RGGNCCY	1 cut(s)	167
FaeI	CATG	1 cut(s)	400
FaiI	YATR	3 cut(s)	207, 332, 398
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	1 cut(s)	396
Fnu4HI	GCNGC	1 cut(s)	377
FokI	GGATG	1 cut(s)	7
Fsp4HI	GCNGC	1 cut(s)	377
GluI	GCNGC	1 cut(s)	377
HaeIII	GGCC	4 cut(s)	5, 121, 220, 244
Hin1II	CATG	1 cut(s)	400
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HinfI	GANTC	1 cut(s)	101
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188I	TCNGA	4 cut(s)	100, 106, 198, 304
Hpy188III	TCNNGA	1 cut(s)	143
Hpy8I	GTNNAC	1 cut(s)	18
HpyAV	CCTTC	3 cut(s)	103, 157, 211
HpyCH4III	ACNGT	1 cut(s)	15
HpyF10VI	GCNNNNNNNGC	1 cut(s)	382
HpyF3I	CTNAG	2 cut(s)	8, 105
Hsp92II	CATG	1 cut(s)	400
LmnI	GCTCC	2 cut(s)	49, 343
LweI	GCATC	1 cut(s)	308
MaeIII	GTNAC	1 cut(s)	147
MfeI	CAATTG	1 cut(s)	39
MluCI	AATT	5 cut(s)	39, 89, 269, 347, 416
MnlI	CCTC	5 cut(s)	132, 202, 242, 411, 417
MroXI	GAANNNNTTC	1 cut(s)	350
MseI	TTAA	1 cut(s)	281
MunI	CAATTG	1 cut(s)	39
Mva1269I	GAATGC	1 cut(s)	378
MwoI	GCNNNNNNNGC	1 cut(s)	382
NlaIII	CATG	1 cut(s)	400
NlaIV	GGNNCC	1 cut(s)	168
NspV	TTCGAA	1 cut(s)	161
PctI	GAATGC	1 cut(s)	378
PdmI	GAANNNNTTC	1 cut(s)	350
PfeI	GAWTC	1 cut(s)	101
PkrI	GCNGC	1 cut(s)	378
PpuMI	RGGWCCY	1 cut(s)	167
Psp5II	RGGWCCY	1 cut(s)	167
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	4 cut(s)	4, 167, 229, 242
PspPPI	RGGWCCY	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	1 cut(s)	377
Sau96I	GGNCC	4 cut(s)	4, 167, 229, 242
SetI	ASST	8 cut(s)	189, 203, 234, 292, 340, 363, 409, 438
SfaNI	GCATC	1 cut(s)	308
SfuI	TTCGAA	1 cut(s)	161
SinI	GGWCC	2 cut(s)	167, 229
Sse9I	AATT	5 cut(s)	39, 89, 269, 347, 416
SsiI	CCGC	2 cut(s)	377, 383
TaaI	ACNGT	1 cut(s)	15
TaqI	TCGA	1 cut(s)	161
TasI	AATT	5 cut(s)	39, 89, 269, 347, 416
TauI	GCSGC	1 cut(s)	379
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TscAI	CASTG	1 cut(s)	73
TspDTI	ATGAA	1 cut(s)	170
TspGWI	ACGGA	1 cut(s)	148
TspRI	CASTG	1 cut(s)	73
VpaK11BI	GGWCC	2 cut(s)	167, 229
XapI	RAATTY	2 cut(s)	89, 416
XmnI	GAANNNNTTC	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.