Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006218.1

Orthogroup ID

OG0005118

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3425

Gene Structure 3425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006218.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1713 bp

atgcagtttccattagctagttccatttgtactgtagcttgtaattgtgtatatagtgctgttcctccaccacatcagttgtcggctggagttcagagttctggaaatgaggtaaaggccattacaactttggcgtctgcaactgtcggtcttacaccagctcccccagtttcctcagttgggactcctgtgaccactaccatttttactcaagggacagtatctcagtctggaggattttcaaacggtgtgcaatctcaggcaagcagtggtggttgtccacaacttccatctggtggaactgttatttcatgtatttcttctatctttcctgcagaaggacaacaaccattgcatctgttcttgtcaagtaataatttgaaaagtctcgaagatgctaggcttttggctgaacatcttttggatacaatcagcgtagagtgtggtgtctccagggtttcttcatctaaggtttatagtgctattgcacccccacagcaggtatatagtgccgttcctccaccacatcagttgtcggctggagttcagagttctggaaatgaggtaaaggccattacaactttggcgtctgcaactgtcggtcttacaccagctcccccagtttcctcagttgggactcctgtgaccactaccatttttactcaagggacagtatctcagtctggaggattttcaaacggtgtgctatctcagtcaagcagtggtggttgtccacaacttccatctggtggaacaatctacagtggatatggtgggatatatcctcaagtcacacctttacaacaagttgccctggcccttagacagtcaacatcccctatcacttctacaattgctcccacaacatcagtcccaagcactgaaccaaagttgaatacgaaattcagttctgattctgagaaggaaaaacggcctccacaaagacggaagtttcaggagttaccagttagttcgaagggtcctgccaaagttcatcaggtattttctctgaccttctatgaggctaactggccgatactggacctctctattgggccattggtttctatttttcacagggaattggacttattaaagccacctgaactggcatcagatttgggtgtgagaaatgtatcaactatgccagctccaaagaaattgttccagcaggtttcaaatggaatgccgccaccgccacccagaaccatgcctccacctccaccaaaatttacatcatcaacacaggttgttaaagagattgacaagaacaatgttctgaaaaagacaaaatctgataatgtacctgatactttggtcaagctcatggaatatggagaagatgatgatgactctgaggaaactgatgaacagtcacccaatagcaaccctgttgcagtttcaaatggaatgccgccaccgccacccagaaccatgcctccacctccaccaaaatttacatcatcaacacaggttgctaaagagattgacaagaacaatgttctgaaaaagacaaagtctgataatgtacctgatactttggtcaagctcatggaatatggagaagatgatgatgactctgaggaaactgatgaacagtcacccaatagcaaccctgttgcaggatctgttgcggcacttactggtcacttttctcgggagtcgtcagctagtggaaaagctgtgttgtacttgtatcttatcctggttcaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

571

Amino Acids

59.93

Weight (kDa)

5.51

Isoelectric Point (pI)

58.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29390 AT3G29390
fragaria_vesca	FvH4_6g46910 FvH4_6g46910 FvH4_6g46910 FvH4_6g46910
malus_domestica	MD09G1066300.v1.1 MD09G1066400.v1.1
prunus_persica	Prupe.3G255200_v2.0.a1 Prupe.3G255200_v2.0.a1
pyrus_communis	pycom111g05570
rosa_chinensis	RchiOBHm_Chr2g0165881
rosa_laevigata	RLG00000021564
rosa_multiflora	Rmu_co8354311.1_g000001 Rmu_sc0001982.1_g000006 Rmu_sc0006218.1_g000001 Rmu_sc0006218.1_g000002 Rmu_sc0008709.1_g000009 Rmu_sc0013817.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085390
rosa_rugosa	Rorug02G0518600 Rorug02G0518700 Rorug02G0518800 Rorug05G0064400 Rorug05G0462700
rosa_samantha	Rh2AG584500 Rh2BG596300 Rh2CG567200 Rh2DG606100
rosa_wichuraiana	Rw2G048730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	490, 1162
AccB7I	CCANNNNNTGG	2 cut(s)	296, 749
AciI	CCGC	5 cut(s)	1190, 1196, 1415, 1421, 1634
AclWI	GGATC	1 cut(s)	1633
AcoI	YGGCCR	1 cut(s)	1031
AcsI	RAATTY	3 cut(s)	902, 1229, 1454
AcyI	GRCGYC	2 cut(s)	134, 587
AfaI	GTAC	4 cut(s)	31, 1305, 1530, 1691
AfiI	CCNNNNNNNGG	7 cut(s)	180, 296, 338, 499, 633, 749, 1622
AgsI	TTSAA	7 cut(s)	243, 382, 696, 895, 1179, 1404, 1712
AjnI	CCWGG	3 cut(s)	452, 813, 1704
AloI	GAACNNNNNNTCC	4 cut(s)	1198, 1230, 1423, 1455
AluBI	AGCT	9 cut(s)	17, 38, 161, 614, 1151, 1324, 1549, 1670, 1682
AluI	AGCT	9 cut(s)	17, 38, 161, 614, 1151, 1324, 1549, 1670, 1682
Alw26I	GTCTC	2 cut(s)	392, 454
AlwI	GGATC	1 cut(s)	1633
AlwNI	CAGNNNCTG	1 cut(s)	1628
Ama87I	CYCGRG	1 cut(s)	1656
AoxI	GGCC	6 cut(s)	117, 570, 816, 932, 1031, 1055
ApoI	RAATTY	3 cut(s)	902, 1229, 1454
Asp700I	GAANNNNTTC	1 cut(s)	1163
AspS9I	GGNCC	4 cut(s)	817, 980, 1042, 1055
AsuHPI	GGTGA	2 cut(s)	1368, 1593
AsuII	TTCGAA	1 cut(s)	974
AvaI	CYCGRG	1 cut(s)	1656
AvaII	GGWCC	2 cut(s)	980, 1042
BaeI	ACNNNNGTAYC	4 cut(s)	1302, 1335, 1527, 1560
BccI	CCATC	2 cut(s)	298, 751
BceAI	ACGGC	2 cut(s)	497, 947
BciT130I	CCWGG	3 cut(s)	454, 815, 1706
BciVI	GTATCC	1 cut(s)	418
BcoDI	GTCTC	2 cut(s)	392, 454
BfaI	CTAG	3 cut(s)	18, 399, 1671
BfmI	CTRYAG	3 cut(s)	33, 333, 760
BfuAI	ACCTGC	2 cut(s)	490, 1162
BfuI	GTATCC	1 cut(s)	418
BisI	GCNGC	3 cut(s)	1190, 1415, 1635
BlsI	GCNGC	3 cut(s)	1191, 1416, 1636
Bme1390I	CCNGG	3 cut(s)	454, 815, 1706
Bme18I	GGWCC	2 cut(s)	980, 1042
BmeT110I	CYCGRG	1 cut(s)	1656
BmgT120I	GGNCC	4 cut(s)	817, 980, 1042, 1055
BmiI	GGNNCC	1 cut(s)	981
BmrFI	CCNGG	3 cut(s)	454, 815, 1706
BmrI	ACTGGG	2 cut(s)	161, 614
BmsI	GCATC	3 cut(s)	364, 385, 1121
BmuI	ACTGGG	2 cut(s)	161, 614
BpmI	CTGGAG	5 cut(s)	108, 252, 436, 561, 705
Bpu14I	TTCGAA	1 cut(s)	974
BpuEI	CTTGAG	3 cut(s)	195, 648, 771
BsaHI	GRCGYC	2 cut(s)	134, 587
BsaJI	CCNNGG	2 cut(s)	453, 813
Bsc4I	CCNNNNNNNGG	7 cut(s)	180, 296, 338, 499, 633, 749, 1622
Bse1I	ACTGG	7 cut(s)	167, 620, 965, 1034, 1044, 1113, 1648
Bse3DI	GCAATG	1 cut(s)	350
BseBI	CCWGG	3 cut(s)	454, 815, 1706
BseDI	CCNNGG	2 cut(s)	453, 813
BseGI	GGATG	1 cut(s)	833
BseLI	CCNNNNNNNGG	7 cut(s)	180, 296, 338, 499, 633, 749, 1622
BseMI	GCAATG	1 cut(s)	350
BseMII	CTCAG	9 cut(s)	189, 239, 272, 642, 692, 725, 909, 1347, 1572
BseNI	ACTGG	7 cut(s)	167, 620, 965, 1034, 1044, 1113, 1648
BshFI	GGCC	6 cut(s)	119, 572, 818, 934, 1033, 1057
BsiHKCI	CYCGRG	1 cut(s)	1656
BslFI	GGGAC	5 cut(s)	196, 229, 649, 682, 857
BslI	CCNNNNNNNGG	7 cut(s)	180, 296, 338, 499, 633, 749, 1622
BsmAI	GTCTC	2 cut(s)	392, 454
BsmFI	GGGAC	5 cut(s)	196, 229, 649, 682, 857
BsmI	GAATGC	2 cut(s)	1191, 1416
BsnI	GGCC	6 cut(s)	119, 572, 818, 934, 1033, 1057
BsoBI	CYCGRG	1 cut(s)	1656
Bsp119I	TTCGAA	1 cut(s)	974
Bsp143I	GATC	1 cut(s)	1625
BspACI	CCGC	5 cut(s)	1190, 1196, 1415, 1421, 1634
BspANI	GGCC	6 cut(s)	119, 572, 818, 934, 1033, 1057
BspCNI	CTCAG	9 cut(s)	188, 238, 271, 641, 691, 724, 910, 1348, 1573
BspLI	GGNNCC	1 cut(s)	981
BspMAI	CTGCAG	1 cut(s)	337
BspMI	ACCTGC	2 cut(s)	490, 1162
BspPI	GGATC	1 cut(s)	1633
BspT104I	TTCGAA	1 cut(s)	974
BsrDI	GCAATG	1 cut(s)	350
BsrI	ACTGG	7 cut(s)	167, 620, 965, 1034, 1044, 1113, 1648
BssECI	CCNNGG	2 cut(s)	453, 813
BssMI	GATC	1 cut(s)	1625
BssNI	GRCGYC	2 cut(s)	134, 587
Bst2UI	CCWGG	3 cut(s)	454, 815, 1706
BstACI	GRCGYC	2 cut(s)	134, 587
BstBI	TTCGAA	1 cut(s)	974
BstC8I	GCNNGC	2 cut(s)	265, 1149
BstENI	CCTNNNNNAGG	2 cut(s)	336, 1620
BstF5I	GGATG	1 cut(s)	833
BstKTI	GATC	1 cut(s)	1628
BstMAI	GTCTC	2 cut(s)	392, 454
BstMBI	GATC	1 cut(s)	1625
BstMWI	GCNNNNNNNGC	2 cut(s)	1195, 1420
BstNI	CCWGG	3 cut(s)	454, 815, 1706
BstSCI	CCNGG	3 cut(s)	452, 813, 1704
BstSFI	CTRYAG	3 cut(s)	33, 333, 760
BstX2I	RGATCY	1 cut(s)	1625
BstYI	RGATCY	1 cut(s)	1625
BsuI	GTATCC	1 cut(s)	418
BsuRI	GGCC	6 cut(s)	119, 572, 818, 934, 1033, 1057
BtsCI	GGATG	1 cut(s)	833
BtsI	GCAGTG	2 cut(s)	274, 727
BtsIMutI	CAGTG	4 cut(s)	274, 727, 769, 879
BveI	ACCTGC	2 cut(s)	490, 1162
Cac8I	GCNNGC	2 cut(s)	265, 1149
CaiI	CAGNNNCTG	1 cut(s)	1628
Cfr13I	GGNCC	4 cut(s)	817, 980, 1042, 1055
CseI	GACGC	2 cut(s)	123, 576
Csp6I	GTAC	4 cut(s)	30, 1304, 1529, 1690
CspCI	CAANNNNNGTGG	4 cut(s)	60, 95, 513, 548
CviAII	CATG	5 cut(s)	312, 1210, 1327, 1435, 1552
CviQI	GTAC	4 cut(s)	30, 1304, 1529, 1690
DpnI	GATC	1 cut(s)	1627
DpnII	GATC	1 cut(s)	1625
EaeI	YGGCCR	1 cut(s)	1031
Eco47I	GGWCC	2 cut(s)	980, 1042
Eco88I	CYCGRG	1 cut(s)	1656
EcoNI	CCTNNNNNAGG	2 cut(s)	336, 1620
EcoO109I	RGGNCCY	1 cut(s)	980
EcoRII	CCWGG	3 cut(s)	452, 813, 1704
FaeI	CATG	5 cut(s)	315, 1213, 1330, 1438, 1555
FaqI	GGGAC	5 cut(s)	196, 229, 649, 682, 857
FatI	CATG	5 cut(s)	311, 1209, 1326, 1434, 1551
Fnu4HI	GCNGC	3 cut(s)	1190, 1415, 1635
FokI	GGATG	1 cut(s)	820
Fsp4HI	GCNGC	3 cut(s)	1190, 1415, 1635
FspBI	CTAG	3 cut(s)	18, 399, 1671
GluI	GCNGC	3 cut(s)	1190, 1415, 1635
GsuI	CTGGAG	5 cut(s)	108, 252, 436, 561, 705
HaeIII	GGCC	6 cut(s)	119, 572, 818, 934, 1033, 1057
HgaI	GACGC	2 cut(s)	123, 576
Hin1I	GRCGYC	2 cut(s)	134, 587
Hin1II	CATG	5 cut(s)	315, 1213, 1330, 1438, 1555
HincII	GTYRAC	1 cut(s)	831
HindII	GTYRAC	1 cut(s)	831
HinfI	GANTC	6 cut(s)	184, 637, 914, 1352, 1577, 1661
HphI	GGTGA	2 cut(s)	1368, 1593
Hpy166II	GTNNAC	3 cut(s)	281, 734, 831
Hpy188III	TCNNGA	7 cut(s)	102, 231, 389, 555, 684, 956, 1658
Hpy8I	GTNNAC	3 cut(s)	281, 734, 831
HpyAV	CCTTC	4 cut(s)	332, 916, 970, 1024
HpyCH4V	TGCA	9 cut(s)	4, 140, 253, 335, 355, 488, 593, 1397, 1622
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1195, 1420
Hsp92I	GRCGYC	2 cut(s)	134, 587
Hsp92II	CATG	5 cut(s)	315, 1213, 1330, 1438, 1555
Kzo9I	GATC	1 cut(s)	1625
LmnI	GCTCC	4 cut(s)	166, 619, 862, 1156
LweI	GCATC	3 cut(s)	364, 385, 1121
MaeI	CTAG	3 cut(s)	18, 399, 1671
MaeIII	GTNAC	7 cut(s)	190, 643, 790, 960, 1374, 1599, 1646
MalI	GATC	1 cut(s)	1627
MboI	GATC	1 cut(s)	1625
MboII	GAAGA	5 cut(s)	312, 404, 453, 1352, 1577
MfeI	CAATTG	1 cut(s)	852
MflI	RGATCY	1 cut(s)	1625
MluCI	AATT	8 cut(s)	43, 376, 852, 902, 1082, 1160, 1229, 1454
MlyI	GAGTC	5 cut(s)	178, 631, 1346, 1571, 1670
MroXI	GAANNNNTTC	1 cut(s)	1163
MseI	TTAA	2 cut(s)	1094, 1254
MspR9I	CCNGG	3 cut(s)	454, 815, 1706
MunI	CAATTG	1 cut(s)	852
Mva1269I	GAATGC	2 cut(s)	1191, 1416
MvaI	CCWGG	3 cut(s)	454, 815, 1706
MwoI	GCNNNNNNNGC	2 cut(s)	1195, 1420
NdeII	GATC	1 cut(s)	1625
NlaIII	CATG	5 cut(s)	315, 1213, 1330, 1438, 1555
NlaIV	GGNNCC	1 cut(s)	981
NmuCI	GTSAC	6 cut(s)	190, 643, 790, 1374, 1599, 1646
NspV	TTCGAA	1 cut(s)	974
PctI	GAATGC	2 cut(s)	1191, 1416
PdmI	GAANNNNTTC	1 cut(s)	1163
PfeI	GAWTC	1 cut(s)	914
PflFI	GACNNNGTC	1 cut(s)	1516
PflMI	CCANNNNNTGG	2 cut(s)	296, 749
PkrI	GCNGC	3 cut(s)	1191, 1416, 1636
PleI	GAGTC	5 cut(s)	178, 631, 1346, 1571, 1669
PpsI	GAGTC	5 cut(s)	178, 631, 1346, 1571, 1669
PpuMI	RGGWCCY	1 cut(s)	980
Psp5II	RGGWCCY	1 cut(s)	980
Psp6I	CCWGG	3 cut(s)	452, 813, 1704
PspGI	CCWGG	3 cut(s)	452, 813, 1704
PspN4I	GGNNCC	1 cut(s)	981
PspPI	GGNCC	4 cut(s)	817, 980, 1042, 1055
PspPPI	RGGWCCY	1 cut(s)	980
PstI	CTGCAG	1 cut(s)	337
PstNI	CAGNNNCTG	1 cut(s)	1628
PsuI	RGATCY	1 cut(s)	1625
PsyI	GACNNNGTC	1 cut(s)	1516
RsaI	GTAC	4 cut(s)	31, 1305, 1530, 1691
RsaNI	GTAC	4 cut(s)	30, 1304, 1529, 1690
SaqAI	TTAA	2 cut(s)	1094, 1254
SatI	GCNGC	3 cut(s)	1190, 1415, 1635
Sau3AI	GATC	1 cut(s)	1625
Sau96I	GGNCC	4 cut(s)	817, 980, 1042, 1055
SchI	GAGTC	5 cut(s)	178, 631, 1346, 1571, 1670
ScrFI	CCNGG	3 cut(s)	454, 815, 1706
SfaNI	GCATC	3 cut(s)	364, 385, 1121
SfcI	CTRYAG	3 cut(s)	33, 333, 760
SfuI	TTCGAA	1 cut(s)	974
SinI	GGWCC	2 cut(s)	980, 1042
SmlI	CTYRAG	3 cut(s)	210, 663, 786
SmoI	CTYRAG	3 cut(s)	210, 663, 786
Sse9I	AATT	8 cut(s)	43, 376, 852, 902, 1082, 1160, 1229, 1454
SsiI	CCGC	5 cut(s)	1190, 1196, 1415, 1421, 1634
SspMI	CTAG	3 cut(s)	18, 399, 1671
StyD4I	CCNGG	3 cut(s)	452, 813, 1704
TaqI	TCGA	2 cut(s)	390, 974
TaqII	GACCGA	2 cut(s)	137, 590
TasI	AATT	8 cut(s)	43, 376, 852, 902, 1082, 1160, 1229, 1454
TatI	WGTACW	2 cut(s)	29, 1689
TauI	GCSGC	3 cut(s)	1192, 1417, 1637
TfiI	GAWTC	1 cut(s)	914
Tru1I	TTAA	2 cut(s)	1094, 1254
Tru9I	TTAA	2 cut(s)	1094, 1254
TscAI	CASTG	4 cut(s)	274, 727, 769, 886
TseFI	GTSAC	6 cut(s)	190, 643, 790, 1374, 1599, 1646
Tsp45I	GTSAC	6 cut(s)	190, 643, 790, 1374, 1599, 1646
TspDTI	ATGAA	5 cut(s)	300, 453, 983, 1383, 1608
TspGWI	ACGGA	1 cut(s)	961
TspRI	CASTG	4 cut(s)	274, 727, 769, 886
Tth111I	GACNNNGTC	1 cut(s)	1516
Van91I	CCANNNNNTGG	2 cut(s)	296, 749
VpaK11BI	GGWCC	2 cut(s)	980, 1042
XagI	CCTNNNNNAGG	2 cut(s)	336, 1620
XapI	RAATTY	3 cut(s)	902, 1229, 1454
XcmI	CCANNNNNNNNNTGG	2 cut(s)	127, 580
XmnI	GAANNNNTTC	1 cut(s)	1163
XspI	CTAG	3 cut(s)	18, 399, 1671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.