Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0005118

Physical Location & Seq

Genomic Coordinates Forward (+)

3563849 .. 3566119

Gene Structure 2271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g05570.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGACGGAGGAGAGTGGCGCTAGGGTTTCCTCTGACGTGCCCAGCGATGATTCACAAACAAGGCAAAGGAAGAAAAGAAAGTGGGATCAACCTGCAGCATCCTTGGTTTCAGCCGGTTTAGCAGTGCCTGGGGCTCTCCCAATGGGAAATGTGGGATTTCTTGGTGGGATTGCAATTCCTGGCACAACTCCGGTTACTGGTGCTCTTTCGATGAATGCAATTGCGGCCAGCTATGCTACCATACCTCAGGCATATCAGGTACCTCTGATCCCGCCACAGACTGCCACGGTCATTCAGAAATTAATTCAACCGAAGATTCAAGATGAGTTAATAATAGCGCGAGAAATTGTTATTAACGATGCAGAGTCTTCAGTTCGCTACAAGTTGACAAAACGCCAAACACAGGAGGAGATCCAAAAATGCACGGGAGCTGTGGTGATAACAAGGGGAAAGTATCGTCCACCAAATTCATCGACTGATGGTGAAAAGCCACTATATCTTCATATATCTTCAGGGGCTCATTTAAAAGAGACAGCAGAACGTATTTTAGCAGTTGACCATGCTGCTGCCATGGTTGAAGAAATGCTGAAACAGGGTCAGAATCCGACTATGAGCAATGGAGTGATGGCACAAGGTACTTGTGTATATTTGGGCTTTGACGCAGATCCATCATTGAACATTGCAGCTCGTATACGTGGTCCAAATGTAAGTTACATTGTTCCTCCCTTTTTCACGTCTTATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

249

Amino Acids

26.62

Weight (kDa)

8.48

Isoelectric Point (pI)

39.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29390 AT3G29390
fragaria_vesca	FvH4_6g46910 FvH4_6g46910 FvH4_6g46910 FvH4_6g46910
malus_domestica	MD09G1066300.v1.1 MD09G1066400.v1.1
prunus_persica	Prupe.3G255200_v2.0.a1 Prupe.3G255200_v2.0.a1
pyrus_communis	pycom111g05570
rosa_chinensis	RchiOBHm_Chr2g0165881
rosa_laevigata	RLG00000021564
rosa_multiflora	Rmu_co8354311.1_g000001 Rmu_sc0001982.1_g000006 Rmu_sc0006218.1_g000001 Rmu_sc0006218.1_g000002 Rmu_sc0008709.1_g000009 Rmu_sc0013817.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085390
rosa_rugosa	Rorug02G0518600 Rorug02G0518700 Rorug02G0518800 Rorug05G0064400 Rorug05G0462700
rosa_samantha	Rh2AG584500 Rh2BG596300 Rh2CG567200 Rh2DG606100
rosa_wichuraiana	Rw2G048730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	100
Acc65I	GGTACC	1 cut(s)	259
AccB1I	GGYRCC	1 cut(s)	259
AccI	GTMKAC	1 cut(s)	691
AccII	CGCG	1 cut(s)	340
AciI	CCGC	2 cut(s)	224, 272
AclWI	GGATC	4 cut(s)	93, 262, 406, 659
AcoI	YGGCCR	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	466
AcuI	CTGAAG	2 cut(s)	354, 495
AfaI	GTAC	2 cut(s)	261, 637
AfiI	CCNNNNNNNGG	2 cut(s)	197, 403
AgsI	TTSAA	4 cut(s)	308, 320, 578, 676
AjiI	CACGTC	2 cut(s)	37, 735
AjnI	CCWGG	2 cut(s)	127, 178
AluBI	AGCT	3 cut(s)	231, 431, 686
AluI	AGCT	3 cut(s)	231, 431, 686
Alw21I	GWGCWC	1 cut(s)	205
Alw26I	GTCTC	1 cut(s)	524
AlwI	GGATC	4 cut(s)	93, 262, 406, 659
AlwNI	CAGNNNCTG	1 cut(s)	128
AoxI	GGCC	1 cut(s)	225
ApeKI	GCWGC	4 cut(s)	95, 563, 566, 683
ApoI	RAATTY	1 cut(s)	466
AseI	ATTAAT	1 cut(s)	302
Asp718I	GGTACC	1 cut(s)	259
AspLEI	GCGC	2 cut(s)	20, 340
AspS9I	GGNCC	1 cut(s)	698
AsuHPI	GGTGA	2 cut(s)	448, 494
AvaII	GGWCC	1 cut(s)	698
AxyI	CCTNAGG	1 cut(s)	246
BaeGI	GKGCMC	1 cut(s)	42
BaeI	ACNNNNGTAYC	2 cut(s)	627, 660
BanI	GGYRCC	1 cut(s)	259
BanII	GRGCYC	2 cut(s)	136, 520
BbsI	GAAGAC	1 cut(s)	360
Bbv12I	GWGCWC	1 cut(s)	205
BbvI	GCAGC	4 cut(s)	107, 550, 553, 695
BccI	CCATC	3 cut(s)	473, 619, 676
BciT130I	CCWGG	2 cut(s)	129, 180
BcoDI	GTCTC	1 cut(s)	524
BfaI	CTAG	1 cut(s)	21
BfmI	CTRYAG	1 cut(s)	93
BfoI	RGCGCY	1 cut(s)	21
BfuAI	ACCTGC	1 cut(s)	100
BisI	GCNGC	5 cut(s)	96, 225, 564, 567, 684
BlsI	GCNGC	5 cut(s)	97, 226, 565, 568, 685
Bme1390I	CCNGG	2 cut(s)	129, 180
Bme18I	GGWCC	1 cut(s)	698
BmgBI	CACGTC	2 cut(s)	37, 735
BmgT120I	GGNCC	1 cut(s)	698
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	2 cut(s)	129, 180
BmsI	GCATC	2 cut(s)	107, 349
BpiI	GAAGAC	1 cut(s)	360
BsaAI	YACGTR	1 cut(s)	695
BsaJI	CCNNGG	4 cut(s)	102, 128, 285, 570
BsaWI	WCCGGW	1 cut(s)	190
BsaXI	ACNNNNNCTCC	2 cut(s)	420, 450
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 403
Bse118I	RCCGGY	1 cut(s)	113
Bse1I	ACTGG	1 cut(s)	202
Bse21I	CCTNAGG	1 cut(s)	246
Bse3DI	GCAATG	2 cut(s)	622, 678
BseBI	CCWGG	2 cut(s)	129, 180
BseDI	CCNNGG	4 cut(s)	102, 128, 285, 570
BseGI	GGATG	1 cut(s)	98
BseLI	CCNNNNNNNGG	2 cut(s)	197, 403
BseMI	GCAATG	2 cut(s)	622, 678
BseMII	CTCAG	1 cut(s)	260
BseNI	ACTGG	1 cut(s)	202
BseRI	GAGGAG	2 cut(s)	23, 422
BseSI	GKGCMC	1 cut(s)	42
BseXI	GCAGC	4 cut(s)	107, 550, 553, 695
BseYI	CCCAGC	1 cut(s)	41
Bsh1236I	CGCG	1 cut(s)	340
BshFI	GGCC	1 cut(s)	227
BshNI	GGYRCC	1 cut(s)	259
BsiHKAI	GWGCWC	1 cut(s)	205
BsiSI	CCGG	2 cut(s)	114, 191
BslI	CCNNNNNNNGG	2 cut(s)	197, 403
BsmAI	GTCTC	1 cut(s)	524
BsmI	GAATGC	1 cut(s)	220
BsnI	GGCC	1 cut(s)	227
Bsp1286I	GDGCHC	4 cut(s)	42, 136, 205, 520
Bsp143I	GATC	4 cut(s)	85, 267, 411, 664
Bsp19I	CCATGG	1 cut(s)	570
BspACI	CCGC	2 cut(s)	224, 272
BspANI	GGCC	1 cut(s)	227
BspCNI	CTCAG	1 cut(s)	259
BspFNI	CGCG	1 cut(s)	340
BspLI	GGNNCC	1 cut(s)	261
BspMAI	CTGCAG	1 cut(s)	97
BspMI	ACCTGC	1 cut(s)	100
BspPI	GGATC	4 cut(s)	93, 262, 406, 659
BspT107I	GGYRCC	1 cut(s)	259
BsrDI	GCAATG	2 cut(s)	622, 678
BsrFI	RCCGGY	1 cut(s)	113
BsrI	ACTGG	1 cut(s)	202
BssAI	RCCGGY	1 cut(s)	113
BssECI	CCNNGG	4 cut(s)	102, 128, 285, 570
BssMI	GATC	4 cut(s)	85, 267, 411, 664
BssNAI	GTATAC	1 cut(s)	692
BssT1I	CCWWGG	2 cut(s)	102, 570
Bst1107I	GTATAC	1 cut(s)	692
Bst2UI	CCWGG	2 cut(s)	129, 180
Bst4CI	ACNGT	1 cut(s)	289
BstBAI	YACGTR	1 cut(s)	695
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	1 cut(s)	246
BstDSI	CCRYGG	2 cut(s)	285, 570
BstF5I	GGATG	1 cut(s)	98
BstFNI	CGCG	1 cut(s)	340
BstH2I	RGCGCY	1 cut(s)	21
BstHHI	GCGC	2 cut(s)	20, 340
BstKTI	GATC	4 cut(s)	88, 270, 414, 667
BstMAI	GTCTC	1 cut(s)	524
BstMBI	GATC	4 cut(s)	85, 267, 411, 664
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 224, 233
BstNI	CCWGG	2 cut(s)	129, 180
BstSCI	CCNGG	2 cut(s)	127, 178
BstSFI	CTRYAG	1 cut(s)	93
BstSLI	GKGCMC	1 cut(s)	42
BstUI	CGCG	1 cut(s)	340
BstV1I	GCAGC	4 cut(s)	107, 550, 553, 695
BstV2I	GAAGAC	1 cut(s)	360
BstX2I	RGATCY	2 cut(s)	411, 664
BstYI	RGATCY	2 cut(s)	411, 664
BstZ17I	GTATAC	1 cut(s)	692
Bsu36I	CCTNAGG	1 cut(s)	246
BsuRI	GGCC	1 cut(s)	227
BtgI	CCRYGG	2 cut(s)	285, 570
BtgZI	GCGATG	1 cut(s)	60
BtrI	CACGTC	2 cut(s)	37, 735
BtsCI	GGATG	1 cut(s)	98
BtsI	GCAGTG	1 cut(s)	129
BtsIMutI	CAGTG	1 cut(s)	129
BveI	ACCTGC	1 cut(s)	100
Cac8I	GCNNGC	1 cut(s)	229
CaiI	CAGNNNCTG	1 cut(s)	128
CfoI	GCGC	2 cut(s)	20, 340
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	698
CseI	GACGC	1 cut(s)	668
Csp6I	GTAC	2 cut(s)	260, 636
CviAII	CATG	2 cut(s)	560, 571
CviJI	RGCY	9 cut(s)	113, 134, 227, 231, 431, 490, 518, 654, 686
CviKI_1	RGCY	9 cut(s)	113, 134, 227, 231, 431, 490, 518, 654, 686
CviQI	GTAC	2 cut(s)	260, 636
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	4 cut(s)	87, 269, 413, 666
DpnII	GATC	4 cut(s)	85, 267, 411, 664
DraI	TTTAAA	1 cut(s)	525
EaeI	YGGCCR	1 cut(s)	225
Eco130I	CCWWGG	2 cut(s)	102, 570
Eco24I	GRGCYC	2 cut(s)	136, 520
Eco47I	GGWCC	1 cut(s)	698
Eco57I	CTGAAG	2 cut(s)	354, 495
Eco81I	CCTNAGG	1 cut(s)	246
EcoRII	CCWGG	2 cut(s)	127, 178
EcoT14I	CCWWGG	2 cut(s)	102, 570
EcoT38I	GRGCYC	2 cut(s)	136, 520
ErhI	CCWWGG	2 cut(s)	102, 570
FaeI	CATG	2 cut(s)	563, 574
FatI	CATG	2 cut(s)	559, 570
FauI	CCCGC	1 cut(s)	279
FblI	GTMKAC	1 cut(s)	691
Fnu4HI	GCNGC	5 cut(s)	96, 225, 564, 567, 684
FokI	GGATG	1 cut(s)	85
FriOI	GRGCYC	2 cut(s)	136, 520
Fsp4HI	GCNGC	5 cut(s)	96, 225, 564, 567, 684
FspBI	CTAG	1 cut(s)	21
GlaI	GCGC	2 cut(s)	19, 339
GluI	GCNGC	5 cut(s)	96, 225, 564, 567, 684
GsaI	CCCAGC	1 cut(s)	45
HaeII	RGCGCY	1 cut(s)	21
HaeIII	GGCC	1 cut(s)	227
HapII	CCGG	2 cut(s)	114, 191
HgaI	GACGC	1 cut(s)	668
HhaI	GCGC	2 cut(s)	20, 340
Hin1II	CATG	2 cut(s)	563, 574
Hin6I	GCGC	2 cut(s)	18, 338
HinP1I	GCGC	2 cut(s)	18, 338
HincII	GTYRAC	2 cut(s)	387, 556
HindII	GTYRAC	2 cut(s)	387, 556
HinfI	GANTC	4 cut(s)	50, 316, 365, 601
HpaII	CCGG	2 cut(s)	114, 191
HphI	GGTGA	2 cut(s)	448, 494
Hpy166II	GTNNAC	4 cut(s)	387, 461, 556, 692
Hpy188I	TCNGA	5 cut(s)	34, 267, 297, 600, 606
Hpy188III	TCNNGA	1 cut(s)	320
Hpy8I	GTNNAC	4 cut(s)	387, 461, 556, 692
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4IV	ACGT	4 cut(s)	36, 541, 694, 734
HpyCH4V	TGCA	6 cut(s)	95, 173, 218, 362, 423, 683
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 224, 233
HpyF3I	CTNAG	1 cut(s)	246
HpySE526I	ACGT	4 cut(s)	36, 541, 694, 734
Hsp92II	CATG	2 cut(s)	563, 574
HspAI	GCGC	2 cut(s)	18, 338
KpnI	GGTACC	1 cut(s)	263
Kzo9I	GATC	4 cut(s)	85, 267, 411, 664
LmnI	GCTCC	1 cut(s)	428
Lsp1109I	GCAGC	4 cut(s)	107, 550, 553, 695
LweI	GCATC	2 cut(s)	107, 349
MaeI	CTAG	1 cut(s)	21
MaeII	ACGT	4 cut(s)	36, 541, 694, 734
MaeIII	GTNAC	2 cut(s)	193, 710
MalI	GATC	4 cut(s)	87, 269, 413, 666
MboI	GATC	4 cut(s)	85, 267, 411, 664
MboII	GAAGA	6 cut(s)	82, 325, 360, 491, 501, 590
MfeI	CAATTG	1 cut(s)	219
MflI	RGATCY	2 cut(s)	411, 664
MhlI	GDGCHC	4 cut(s)	42, 136, 205, 520
MluCI	AATT	6 cut(s)	174, 219, 299, 303, 345, 466
MlyI	GAGTC	1 cut(s)	374
MmeI	TCCRAC	1 cut(s)	629
MnlI	CCTC	5 cut(s)	40, 255, 273, 400, 732
MseI	TTAA	4 cut(s)	302, 329, 354, 524
MspI	CCGG	2 cut(s)	114, 191
MspR9I	CCNGG	2 cut(s)	129, 180
MunI	CAATTG	1 cut(s)	219
Mva1269I	GAATGC	1 cut(s)	220
MvaI	CCWGG	2 cut(s)	129, 180
MvnI	CGCG	1 cut(s)	340
MwoI	GCNNNNNNNGC	3 cut(s)	119, 224, 233
NcoI	CCATGG	1 cut(s)	570
NdeII	GATC	4 cut(s)	85, 267, 411, 664
NlaIII	CATG	2 cut(s)	563, 574
NlaIV	GGNNCC	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PctI	GAATGC	1 cut(s)	220
PfeI	GAWTC	3 cut(s)	50, 316, 601
PkrI	GCNGC	5 cut(s)	97, 226, 565, 568, 685
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
Ppu21I	YACGTR	1 cut(s)	695
PshBI	ATTAAT	1 cut(s)	302
Psp6I	CCWGG	2 cut(s)	127, 178
PspFI	CCCAGC	1 cut(s)	41
PspGI	CCWGG	2 cut(s)	127, 178
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	1 cut(s)	698
PstI	CTGCAG	1 cut(s)	97
PstNI	CAGNNNCTG	1 cut(s)	128
PsuI	RGATCY	2 cut(s)	411, 664
RsaI	GTAC	2 cut(s)	261, 637
RsaNI	GTAC	2 cut(s)	260, 636
SaqAI	TTAA	4 cut(s)	302, 329, 354, 524
SatI	GCNGC	5 cut(s)	96, 225, 564, 567, 684
Sau3AI	GATC	4 cut(s)	85, 267, 411, 664
Sau96I	GGNCC	1 cut(s)	698
SchI	GAGTC	1 cut(s)	374
ScrFI	CCNGG	2 cut(s)	129, 180
SduI	GDGCHC	4 cut(s)	42, 136, 205, 520
SfaNI	GCATC	2 cut(s)	107, 349
SfcI	CTRYAG	1 cut(s)	93
SinI	GGWCC	1 cut(s)	698
Sse9I	AATT	6 cut(s)	174, 219, 299, 303, 345, 466
SsiI	CCGC	2 cut(s)	224, 272
SspMI	CTAG	1 cut(s)	21
StyD4I	CCNGG	2 cut(s)	127, 178
StyI	CCWWGG	2 cut(s)	102, 570
TaaI	ACNGT	1 cut(s)	289
TaiI	ACGT	4 cut(s)	39, 544, 697, 737
TaqI	TCGA	2 cut(s)	209, 473
TasI	AATT	6 cut(s)	174, 219, 299, 303, 345, 466
TauI	GCSGC	1 cut(s)	227
TfiI	GAWTC	3 cut(s)	50, 316, 601
Tru1I	TTAA	4 cut(s)	302, 329, 354, 524
Tru9I	TTAA	4 cut(s)	302, 329, 354, 524
TscAI	CASTG	1 cut(s)	129
TseI	GCWGC	4 cut(s)	95, 563, 566, 683
TspDTI	ATGAA	3 cut(s)	227, 459, 491
TspGWI	ACGGA	1 cut(s)	20
TspRI	CASTG	1 cut(s)	129
VpaK11BI	GGWCC	1 cut(s)	698
VspI	ATTAAT	1 cut(s)	302
XapI	RAATTY	1 cut(s)	466
XmiI	GTMKAC	1 cut(s)	691
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.