Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013817.1

Orthogroup ID

OG0005118

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1093

Gene Structure 1092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013817.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atgacggaggagagcggcgctagggtttccaatgatgcatcgcaaacaaggcaaagaaagaaaagaaagtgggatcaaccggcggagtcattggtttcagctggtttagcggtgcctggggcgctcccattaggcaatgtgggattgcttggtgggatgacgcttcccggtgtaagtccagtgtccggtgcgatcaatccacttgctgctggctttcctactgtaccgcaggcgtatcaggtgcctctgataccgcagcaagctgcaacagttatccagaaactaatacaaccaaagatccaagatgagttaatagcacgagaaattgttattaatgatgcagagtcttctattcggtacaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

12.8

Weight (kDa)

9.15

Isoelectric Point (pI)

47.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29390 AT3G29390
fragaria_vesca	FvH4_6g46910 FvH4_6g46910 FvH4_6g46910 FvH4_6g46910
malus_domestica	MD09G1066300.v1.1 MD09G1066400.v1.1
prunus_persica	Prupe.3G255200_v2.0.a1 Prupe.3G255200_v2.0.a1
pyrus_communis	pycom111g05570
rosa_chinensis	RchiOBHm_Chr2g0165881
rosa_laevigata	RLG00000021564
rosa_multiflora	Rmu_co8354311.1_g000001 Rmu_sc0001982.1_g000006 Rmu_sc0006218.1_g000001 Rmu_sc0006218.1_g000002 Rmu_sc0008709.1_g000009 Rmu_sc0013817.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085390
rosa_rugosa	Rorug02G0518600 Rorug02G0518700 Rorug02G0518800 Rorug05G0064400 Rorug05G0462700
rosa_samantha	Rh2AG584500 Rh2BG596300 Rh2CG567200 Rh2DG606100
rosa_wichuraiana	Rw2G048730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	112, 241
AccBSI	CCGCTC	1 cut(s)	15
AciI	CCGC	5 cut(s)	15, 83, 110, 227, 254
AclWI	GGATC	2 cut(s)	81, 292
AfaI	GTAC	2 cut(s)	225, 359
AfiI	CCNNNNNNNGG	1 cut(s)	185
AjnI	CCWGG	1 cut(s)	115
AluBI	AGCT	2 cut(s)	101, 263
AluI	AGCT	2 cut(s)	101, 263
AlwI	GGATC	2 cut(s)	81, 292
ApeKI	GCWGC	3 cut(s)	206, 256, 263
AseI	ATTAAT	1 cut(s)	333
AspLEI	GCGC	2 cut(s)	20, 124
AsuC2I	CCSGG	1 cut(s)	168
BanI	GGYRCC	2 cut(s)	112, 241
BauI	CACGAG	1 cut(s)	318
BbsI	GAAGAC	1 cut(s)	339
BbvI	GCAGC	3 cut(s)	193, 250, 268
BciT130I	CCWGG	1 cut(s)	117
BcnI	CCSGG	1 cut(s)	168
BfaI	CTAG	1 cut(s)	21
BfoI	RGCGCY	2 cut(s)	21, 125
BisI	GCNGC	4 cut(s)	16, 207, 257, 264
BlsI	GCNGC	4 cut(s)	17, 208, 258, 265
Bme1390I	CCNGG	2 cut(s)	117, 168
BmiI	GGNNCC	2 cut(s)	114, 243
BmrFI	CCNGG	2 cut(s)	117, 168
BmsI	GCATC	3 cut(s)	25, 47, 328
BpiI	GAAGAC	1 cut(s)	339
BpuMI	CCSGG	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	116
BsaWI	WCCGGW	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse118I	RCCGGY	1 cut(s)	79
Bse1I	ACTGG	1 cut(s)	179
Bse3DI	GCAATG	1 cut(s)	142
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	1 cut(s)	116
BseGI	GGATG	1 cut(s)	162
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMI	GCAATG	1 cut(s)	142
BseNI	ACTGG	1 cut(s)	179
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	3 cut(s)	193, 250, 268
BshNI	GGYRCC	2 cut(s)	112, 241
BsiSI	CCGG	3 cut(s)	80, 168, 186
BslI	CCNNNNNNNGG	1 cut(s)	185
Bsp143I	GATC	3 cut(s)	73, 192, 297
BspACI	CCGC	5 cut(s)	15, 83, 110, 227, 254
BspLI	GGNNCC	2 cut(s)	114, 243
BspPI	GGATC	2 cut(s)	81, 292
BspT107I	GGYRCC	2 cut(s)	112, 241
BsrBI	CCGCTC	1 cut(s)	15
BsrDI	GCAATG	1 cut(s)	142
BsrFI	RCCGGY	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	179
BssAI	RCCGGY	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	116
BssMI	GATC	3 cut(s)	73, 192, 297
BssSI	CACGAG	1 cut(s)	318
Bst2BI	CACGAG	1 cut(s)	318
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	2 cut(s)	223, 271
BstC8I	GCNNGC	3 cut(s)	211, 231, 261
BstF5I	GGATG	1 cut(s)	162
BstH2I	RGCGCY	2 cut(s)	21, 125
BstHHI	GCGC	2 cut(s)	20, 124
BstKTI	GATC	3 cut(s)	76, 195, 300
BstMBI	GATC	3 cut(s)	73, 192, 297
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 107, 121
BstNI	CCWGG	1 cut(s)	117
BstSCI	CCNGG	2 cut(s)	115, 166
BstV1I	GCAGC	3 cut(s)	193, 250, 268
BstV2I	GAAGAC	1 cut(s)	339
BstX2I	RGATCY	1 cut(s)	297
BstYI	RGATCY	1 cut(s)	297
BtgZI	GCGATG	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	186
Cac8I	GCNNGC	3 cut(s)	211, 231, 261
CfoI	GCGC	2 cut(s)	20, 124
Cfr10I	RCCGGY	1 cut(s)	79
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	2 cut(s)	224, 358
CviJI	RGCY	3 cut(s)	101, 213, 263
CviKI_1	RGCY	3 cut(s)	101, 213, 263
CviQI	GTAC	2 cut(s)	224, 358
DpnI	GATC	3 cut(s)	75, 194, 299
DpnII	GATC	3 cut(s)	73, 192, 297
EciI	GGCGGA	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	115
EcoT22I	ATGCAT	1 cut(s)	40
Fnu4HI	GCNGC	4 cut(s)	16, 207, 257, 264
FokI	GGATG	1 cut(s)	169
Fsp4HI	GCNGC	4 cut(s)	16, 207, 257, 264
FspBI	CTAG	1 cut(s)	21
GlaI	GCGC	2 cut(s)	19, 123
GluI	GCNGC	4 cut(s)	16, 207, 257, 264
HaeII	RGCGCY	2 cut(s)	21, 125
HapII	CCGG	3 cut(s)	80, 168, 186
HgaI	GACGC	1 cut(s)	169
HhaI	GCGC	2 cut(s)	20, 124
Hin6I	GCGC	2 cut(s)	18, 122
HinP1I	GCGC	2 cut(s)	18, 122
HinfI	GANTC	2 cut(s)	86, 344
HpaII	CCGG	3 cut(s)	80, 168, 186
Hpy188I	TCNGA	1 cut(s)	249
Hpy188III	TCNNGA	1 cut(s)	277
HpyCH4III	ACNGT	2 cut(s)	223, 271
HpyCH4V	TGCA	3 cut(s)	38, 266, 341
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 107, 121
HspAI	GCGC	2 cut(s)	18, 122
Kzo9I	GATC	3 cut(s)	73, 192, 297
LmnI	GCTCC	1 cut(s)	129
Lsp1109I	GCAGC	3 cut(s)	193, 250, 268
LweI	GCATC	3 cut(s)	25, 47, 328
MaeI	CTAG	1 cut(s)	21
MalI	GATC	3 cut(s)	75, 194, 299
MbiI	CCGCTC	1 cut(s)	15
MboI	GATC	3 cut(s)	73, 192, 297
MboII	GAAGA	1 cut(s)	339
MflI	RGATCY	1 cut(s)	297
MluCI	AATT	1 cut(s)	324
MlyI	GAGTC	2 cut(s)	95, 353
MnlI	CCTC	1 cut(s)	255
Mph1103I	ATGCAT	1 cut(s)	40
MseI	TTAA	2 cut(s)	311, 333
MspA1I	CMGCKG	1 cut(s)	101
MspI	CCGG	3 cut(s)	80, 168, 186
MspR9I	CCNGG	2 cut(s)	117, 168
MvaI	CCWGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	3 cut(s)	49, 107, 121
NciI	CCSGG	1 cut(s)	168
NdeII	GATC	3 cut(s)	73, 192, 297
NlaIV	GGNNCC	2 cut(s)	114, 243
NsiI	ATGCAT	1 cut(s)	40
PkrI	GCNGC	4 cut(s)	17, 208, 258, 265
PleI	GAGTC	2 cut(s)	94, 352
PpsI	GAGTC	2 cut(s)	94, 352
PshBI	ATTAAT	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	2 cut(s)	114, 243
PsuI	RGATCY	1 cut(s)	297
PvuII	CAGCTG	1 cut(s)	101
RsaI	GTAC	2 cut(s)	225, 359
RsaNI	GTAC	2 cut(s)	224, 358
SaqAI	TTAA	2 cut(s)	311, 333
SatI	GCNGC	4 cut(s)	16, 207, 257, 264
Sau3AI	GATC	3 cut(s)	73, 192, 297
SchI	GAGTC	2 cut(s)	95, 353
ScrFI	CCNGG	2 cut(s)	117, 168
SetI	ASST	3 cut(s)	103, 243, 265
SfaNI	GCATC	3 cut(s)	25, 47, 328
Sse9I	AATT	1 cut(s)	324
SsiI	CCGC	5 cut(s)	15, 83, 110, 227, 254
SspMI	CTAG	1 cut(s)	21
StyD4I	CCNGG	2 cut(s)	115, 166
TaaI	ACNGT	2 cut(s)	223, 271
TasI	AATT	1 cut(s)	324
TauI	GCSGC	1 cut(s)	18
Tru1I	TTAA	2 cut(s)	311, 333
Tru9I	TTAA	2 cut(s)	311, 333
TscAI	CASTG	1 cut(s)	186
TseI	GCWGC	3 cut(s)	206, 256, 263
TspGWI	ACGGA	1 cut(s)	20
TspRI	CASTG	1 cut(s)	186
VspI	ATTAAT	1 cut(s)	333
XspI	CTAG	1 cut(s)	21
Zsp2I	ATGCAT	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.