Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001982.1

Orthogroup ID

OG0005118

Physical Location & Seq

Genomic Coordinates Reverse (-)

17197 .. 19333

Gene Structure 2137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001982.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

atggcagagagatcacaaagattgagcttagggtgcggggtgctcaaggttgaagatgaattgtcaaagttggagcaggtcaagtcaattaagctcaaagagatccttctgaaaaagaagttggaactggaggaggtatgtagacagtctcctccaagtttaagttcttctattcggtacaagctgacaaaatgccaaacacaggaggagatccaaaggtgcactggtgctgtggtgataacaaggggcaagtatcatccaccaaaagcgtcaactgatggtgaaaagccattatatcttcatatttctgcaggggctaattttttgagccctacaaggacagcaaagtggatcttcttggcccaaagttgccaatttggggacttggcacttggtgtgtggaagttgaattattcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

15.61

Weight (kDa)

9.36

Isoelectric Point (pI)

43.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29390 AT3G29390
fragaria_vesca	FvH4_6g46910 FvH4_6g46910 FvH4_6g46910 FvH4_6g46910
malus_domestica	MD09G1066300.v1.1 MD09G1066400.v1.1
prunus_persica	Prupe.3G255200_v2.0.a1 Prupe.3G255200_v2.0.a1
pyrus_communis	pycom111g05570
rosa_chinensis	RchiOBHm_Chr2g0165881
rosa_laevigata	RLG00000021564
rosa_multiflora	Rmu_co8354311.1_g000001 Rmu_sc0001982.1_g000006 Rmu_sc0006218.1_g000001 Rmu_sc0006218.1_g000002 Rmu_sc0008709.1_g000009 Rmu_sc0013817.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085390
rosa_rugosa	Rorug02G0518600 Rorug02G0518700 Rorug02G0518800 Rorug05G0064400 Rorug05G0462700
rosa_samantha	Rh2AG584500 Rh2BG596300 Rh2CG567200 Rh2DG606100
rosa_wichuraiana	Rw2G048730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	67
AccI	GTMKAC	1 cut(s)	142
AciI	CCGC	1 cut(s)	36
AclWI	GGATC	3 cut(s)	97, 205, 359
AdeI	CACNNNGTG	1 cut(s)	395
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	2 cut(s)	202, 379
AgsI	TTSAA	2 cut(s)	53, 409
AjuI	GAANNNNNNNTTGG	4 cut(s)	104, 136, 148, 180
AluBI	AGCT	3 cut(s)	27, 94, 184
AluI	AGCT	3 cut(s)	27, 94, 184
Alw21I	GWGCWC	2 cut(s)	45, 224
Alw26I	GTCTC	1 cut(s)	153
Alw44I	GTGCAC	1 cut(s)	220
AlwI	GGATC	3 cut(s)	97, 205, 359
AoxI	GGCC	1 cut(s)	360
ApaLI	GTGCAC	1 cut(s)	220
AspS9I	GGNCC	1 cut(s)	361
AsuHPI	GGTGA	2 cut(s)	247, 293
BaeGI	GKGCMC	1 cut(s)	224
BanII	GRGCYC	1 cut(s)	332
Bbv12I	GWGCWC	2 cut(s)	45, 224
BccI	CCATC	1 cut(s)	272
BcoDI	GTCTC	1 cut(s)	153
BfmI	CTRYAG	1 cut(s)	309
BfuAI	ACCTGC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	361
BpmI	CTGGAG	1 cut(s)	149
Bpu10I	CCTNAGC	1 cut(s)	28
BpuEI	CTTGAG	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	2 cut(s)	202, 379
Bse1I	ACTGG	2 cut(s)	132, 229
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	2 cut(s)	202, 379
BseNI	ACTGG	2 cut(s)	132, 229
BseRI	GAGGAG	3 cut(s)	141, 146, 221
BseSI	GKGCMC	1 cut(s)	224
BshFI	GGCC	1 cut(s)	362
BsiHKAI	GWGCWC	2 cut(s)	45, 224
BslFI	GGGAC	1 cut(s)	395
BslI	CCNNNNNNNGG	2 cut(s)	202, 379
BsmAI	GTCTC	1 cut(s)	153
BsmFI	GGGAC	1 cut(s)	395
BsnI	GGCC	1 cut(s)	362
Bsp1286I	GDGCHC	3 cut(s)	45, 224, 332
Bsp143I	GATC	4 cut(s)	11, 102, 210, 351
BspACI	CCGC	1 cut(s)	36
BspANI	GGCC	1 cut(s)	362
BspMAI	CTGCAG	1 cut(s)	313
BspMI	ACCTGC	1 cut(s)	67
BspPI	GGATC	3 cut(s)	97, 205, 359
BsrI	ACTGG	2 cut(s)	132, 229
BssMI	GATC	4 cut(s)	11, 102, 210, 351
Bst4CI	ACNGT	1 cut(s)	147
BstDEI	CTNAG	1 cut(s)	28
BstF5I	GGATG	1 cut(s)	256
BstKTI	GATC	4 cut(s)	14, 105, 213, 354
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	4 cut(s)	11, 102, 210, 351
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstSFI	CTRYAG	1 cut(s)	309
BstSLI	GKGCMC	1 cut(s)	224
BstX2I	RGATCY	3 cut(s)	102, 210, 351
BstYI	RGATCY	3 cut(s)	102, 210, 351
BsuRI	GGCC	1 cut(s)	362
BtsCI	GGATG	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	222
BveI	ACCTGC	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	361
CseI	GACGC	1 cut(s)	258
Csp6I	GTAC	1 cut(s)	178
CviJI	RGCY	7 cut(s)	27, 94, 184, 289, 317, 330, 362
CviKI_1	RGCY	7 cut(s)	27, 94, 184, 289, 317, 330, 362
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	1 cut(s)	28
DpnI	GATC	4 cut(s)	13, 104, 212, 353
DpnII	GATC	4 cut(s)	11, 102, 210, 351
DraIII	CACNNNGTG	1 cut(s)	395
Eco24I	GRGCYC	1 cut(s)	332
EcoT38I	GRGCYC	1 cut(s)	332
FaiI	YATR	3 cut(s)	139, 295, 303
FalI	AAGNNNNNCTT	4 cut(s)	90, 122, 338, 370
FaqI	GGGAC	1 cut(s)	395
FauI	CCCGC	1 cut(s)	29
FblI	GTMKAC	1 cut(s)	142
FokI	GGATG	1 cut(s)	243
FriOI	GRGCYC	1 cut(s)	332
GsuI	CTGGAG	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	362
HgaI	GACGC	1 cut(s)	258
HincII	GTYRAC	1 cut(s)	273
HindII	GTYRAC	1 cut(s)	273
HphI	GGTGA	2 cut(s)	247, 293
Hpy166II	GTNNAC	3 cut(s)	143, 222, 273
Hpy188I	TCNGA	1 cut(s)	111
Hpy188III	TCNNGA	1 cut(s)	417
Hpy8I	GTNNAC	3 cut(s)	143, 222, 273
HpyAV	CCTTC	1 cut(s)	116
HpyCH4III	ACNGT	1 cut(s)	147
HpyCH4V	TGCA	2 cut(s)	222, 311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
HpyF3I	CTNAG	1 cut(s)	28
Kzo9I	GATC	4 cut(s)	11, 102, 210, 351
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	5 cut(s)	62, 113, 188, 210, 297
MalI	GATC	4 cut(s)	13, 104, 212, 353
MboI	GATC	4 cut(s)	11, 102, 210, 351
MboII	GAAGA	4 cut(s)	65, 159, 290, 346
MflI	RGATCY	3 cut(s)	102, 210, 351
MhlI	GDGCHC	3 cut(s)	45, 224, 332
MluCI	AATT	5 cut(s)	59, 87, 319, 374, 409
MmeI	TCCRAC	2 cut(s)	51, 102
MnlI	CCTC	4 cut(s)	124, 127, 162, 199
MseI	TTAA	2 cut(s)	90, 161
MwoI	GCNNNNNNNGC	1 cut(s)	33
NdeII	GATC	4 cut(s)	11, 102, 210, 351
PspPI	GGNCC	1 cut(s)	361
PstI	CTGCAG	1 cut(s)	313
PsuI	RGATCY	3 cut(s)	102, 210, 351
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
SaqAI	TTAA	2 cut(s)	90, 161
Sau3AI	GATC	4 cut(s)	11, 102, 210, 351
Sau96I	GGNCC	1 cut(s)	361
SduI	GDGCHC	3 cut(s)	45, 224, 332
SetI	ASST	7 cut(s)	29, 51, 81, 96, 138, 186, 221
SfcI	CTRYAG	1 cut(s)	309
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	5 cut(s)	59, 87, 319, 374, 409
SsiI	CCGC	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	147
TasI	AATT	5 cut(s)	59, 87, 319, 374, 409
Tru1I	TTAA	2 cut(s)	90, 161
Tru9I	TTAA	2 cut(s)	90, 161
TscAI	CASTG	1 cut(s)	229
TspDTI	ATGAA	2 cut(s)	72, 290
TspRI	CASTG	1 cut(s)	229
VneI	GTGCAC	1 cut(s)	220
XcmI	CCANNNNNNNNNTGG	1 cut(s)	221
XmiI	GTMKAC	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.