Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008709.1

Orthogroup ID

OG0005118

Physical Location & Seq

Genomic Coordinates Reverse (-)

36523 .. 38948

Gene Structure 2426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008709.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

atgacggaggagagcggcgctagggtttccaatgatgcatcgcaaacaaggcaaagaaagaaaagaaagtgggatcaaccggcggagtcattggtttcagctggtttagcggtgcctggggcgctcccattaggcaatgtgggattgcttggtgggatgacgcttgccggtgtaagtccagtgtccggtgtgatcaatccacttgctgctggctttcctaccgtaccgcaggcgtatcaggtgcctctgataccgcagcaagctgcaacagttatccagaaactaatacaaccaaagatccaagatgagttaatagcacgagaaattgttattaatgatgcagagtcttctattcggtacaagctgacaaaacgccaaacacaggaggagatccaaaggtgcactggtgctgtggtgataacaaggggcaagtatcatccaccaaatgcgtcaactgatggtgaaaagccattatatcttcatatttctgcaggggctaattttttgagccctacaaggacagcaaagtggatcttcttggcccaaagttgccaatttggggacttggcacttggtgtgtggaagttgaattattcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

199

Amino Acids

21.48

Weight (kDa)

9.45

Isoelectric Point (pI)

43.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29390 AT3G29390
fragaria_vesca	FvH4_6g46910 FvH4_6g46910 FvH4_6g46910 FvH4_6g46910
malus_domestica	MD09G1066300.v1.1 MD09G1066400.v1.1
prunus_persica	Prupe.3G255200_v2.0.a1 Prupe.3G255200_v2.0.a1
pyrus_communis	pycom111g05570
rosa_chinensis	RchiOBHm_Chr2g0165881
rosa_laevigata	RLG00000021564
rosa_multiflora	Rmu_co8354311.1_g000001 Rmu_sc0001982.1_g000006 Rmu_sc0006218.1_g000001 Rmu_sc0006218.1_g000002 Rmu_sc0008709.1_g000009 Rmu_sc0013817.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085390
rosa_rugosa	Rorug02G0518600 Rorug02G0518700 Rorug02G0518800 Rorug05G0064400 Rorug05G0462700
rosa_samantha	Rh2AG584500 Rh2BG596300 Rh2CG567200 Rh2DG606100
rosa_wichuraiana	Rw2G048730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	112, 241
AccBSI	CCGCTC	1 cut(s)	15
AciI	CCGC	5 cut(s)	15, 83, 110, 227, 254
AclWI	GGATC	4 cut(s)	81, 292, 385, 539
AdeI	CACNNNGTG	1 cut(s)	575
AfaI	GTAC	2 cut(s)	225, 359
AfiI	CCNNNNNNNGG	3 cut(s)	185, 382, 559
AgsI	TTSAA	1 cut(s)	589
AjnI	CCWGG	1 cut(s)	115
AluBI	AGCT	3 cut(s)	101, 263, 364
AluI	AGCT	3 cut(s)	101, 263, 364
Alw21I	GWGCWC	1 cut(s)	404
Alw44I	GTGCAC	1 cut(s)	400
AlwI	GGATC	4 cut(s)	81, 292, 385, 539
AoxI	GGCC	1 cut(s)	540
ApaLI	GTGCAC	1 cut(s)	400
ApeKI	GCWGC	3 cut(s)	206, 256, 263
AseI	ATTAAT	1 cut(s)	333
AspLEI	GCGC	2 cut(s)	20, 124
AspS9I	GGNCC	1 cut(s)	541
AsuHPI	GGTGA	2 cut(s)	427, 473
BaeGI	GKGCMC	1 cut(s)	404
BanI	GGYRCC	2 cut(s)	112, 241
BanII	GRGCYC	1 cut(s)	512
BauI	CACGAG	1 cut(s)	318
BbsI	GAAGAC	1 cut(s)	339
Bbv12I	GWGCWC	1 cut(s)	404
BbvI	GCAGC	3 cut(s)	193, 250, 268
BccI	CCATC	1 cut(s)	452
BciT130I	CCWGG	1 cut(s)	117
BclI	TGATCA	1 cut(s)	192
BfaI	CTAG	1 cut(s)	21
BfmI	CTRYAG	1 cut(s)	489
BfoI	RGCGCY	2 cut(s)	21, 125
BisI	GCNGC	4 cut(s)	16, 207, 257, 264
BlsI	GCNGC	4 cut(s)	17, 208, 258, 265
Bme1390I	CCNGG	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	541
BmiI	GGNNCC	2 cut(s)	114, 243
BmrFI	CCNGG	1 cut(s)	117
BmsI	GCATC	3 cut(s)	25, 47, 328
BpiI	GAAGAC	1 cut(s)	339
BsaJI	CCNNGG	1 cut(s)	116
BsaWI	WCCGGW	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	3 cut(s)	185, 382, 559
Bse118I	RCCGGY	2 cut(s)	79, 167
Bse1I	ACTGG	2 cut(s)	179, 409
Bse3DI	GCAATG	1 cut(s)	142
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	1 cut(s)	116
BseGI	GGATG	2 cut(s)	162, 436
BseLI	CCNNNNNNNGG	3 cut(s)	185, 382, 559
BseMI	GCAATG	1 cut(s)	142
BseNI	ACTGG	2 cut(s)	179, 409
BseRI	GAGGAG	2 cut(s)	23, 401
BseSI	GKGCMC	1 cut(s)	404
BseXI	GCAGC	3 cut(s)	193, 250, 268
BshFI	GGCC	1 cut(s)	542
BshNI	GGYRCC	2 cut(s)	112, 241
BsiHKAI	GWGCWC	1 cut(s)	404
BsiSI	CCGG	3 cut(s)	80, 168, 186
BslFI	GGGAC	1 cut(s)	575
BslI	CCNNNNNNNGG	3 cut(s)	185, 382, 559
BsmFI	GGGAC	1 cut(s)	575
BsnI	GGCC	1 cut(s)	542
Bsp1286I	GDGCHC	2 cut(s)	404, 512
Bsp143I	GATC	5 cut(s)	73, 192, 297, 390, 531
BspACI	CCGC	5 cut(s)	15, 83, 110, 227, 254
BspANI	GGCC	1 cut(s)	542
BspLI	GGNNCC	2 cut(s)	114, 243
BspMAI	CTGCAG	1 cut(s)	493
BspPI	GGATC	4 cut(s)	81, 292, 385, 539
BspT107I	GGYRCC	2 cut(s)	112, 241
BsrBI	CCGCTC	1 cut(s)	15
BsrDI	GCAATG	1 cut(s)	142
BsrFI	RCCGGY	2 cut(s)	79, 167
BsrI	ACTGG	2 cut(s)	179, 409
BssAI	RCCGGY	2 cut(s)	79, 167
BssECI	CCNNGG	1 cut(s)	116
BssMI	GATC	5 cut(s)	73, 192, 297, 390, 531
BssSI	CACGAG	1 cut(s)	318
Bst2BI	CACGAG	1 cut(s)	318
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	2 cut(s)	223, 271
BstC8I	GCNNGC	4 cut(s)	165, 211, 231, 261
BstF5I	GGATG	2 cut(s)	162, 436
BstH2I	RGCGCY	2 cut(s)	21, 125
BstHHI	GCGC	2 cut(s)	20, 124
BstKTI	GATC	5 cut(s)	76, 195, 300, 393, 534
BstMBI	GATC	5 cut(s)	73, 192, 297, 390, 531
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 107, 121
BstNI	CCWGG	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	115
BstSFI	CTRYAG	1 cut(s)	489
BstSLI	GKGCMC	1 cut(s)	404
BstV1I	GCAGC	3 cut(s)	193, 250, 268
BstV2I	GAAGAC	1 cut(s)	339
BstX2I	RGATCY	3 cut(s)	297, 390, 531
BstYI	RGATCY	3 cut(s)	297, 390, 531
BsuRI	GGCC	1 cut(s)	542
BtgZI	GCGATG	1 cut(s)	24
BtsCI	GGATG	2 cut(s)	162, 436
BtsIMutI	CAGTG	2 cut(s)	186, 402
Cac8I	GCNNGC	4 cut(s)	165, 211, 231, 261
CfoI	GCGC	2 cut(s)	20, 124
Cfr10I	RCCGGY	2 cut(s)	79, 167
Cfr13I	GGNCC	1 cut(s)	541
CseI	GACGC	2 cut(s)	169, 438
Csp6I	GTAC	2 cut(s)	224, 358
CviJI	RGCY	8 cut(s)	101, 213, 263, 364, 469, 497, 510, 542
CviKI_1	RGCY	8 cut(s)	101, 213, 263, 364, 469, 497, 510, 542
CviQI	GTAC	2 cut(s)	224, 358
DpnI	GATC	5 cut(s)	75, 194, 299, 392, 533
DpnII	GATC	5 cut(s)	73, 192, 297, 390, 531
DraIII	CACNNNGTG	1 cut(s)	575
EciI	GGCGGA	1 cut(s)	98
Eco24I	GRGCYC	1 cut(s)	512
EcoRII	CCWGG	1 cut(s)	115
EcoT22I	ATGCAT	1 cut(s)	40
EcoT38I	GRGCYC	1 cut(s)	512
FaiI	YATR	2 cut(s)	475, 483
FalI	AAGNNNNNCTT	2 cut(s)	518, 550
FaqI	GGGAC	1 cut(s)	575
FbaI	TGATCA	1 cut(s)	192
Fnu4HI	GCNGC	4 cut(s)	16, 207, 257, 264
FokI	GGATG	2 cut(s)	169, 423
FriOI	GRGCYC	1 cut(s)	512
Fsp4HI	GCNGC	4 cut(s)	16, 207, 257, 264
FspBI	CTAG	1 cut(s)	21
GlaI	GCGC	2 cut(s)	19, 123
GluI	GCNGC	4 cut(s)	16, 207, 257, 264
HaeII	RGCGCY	2 cut(s)	21, 125
HaeIII	GGCC	1 cut(s)	542
HapII	CCGG	3 cut(s)	80, 168, 186
HgaI	GACGC	2 cut(s)	169, 438
HhaI	GCGC	2 cut(s)	20, 124
Hin6I	GCGC	2 cut(s)	18, 122
HinP1I	GCGC	2 cut(s)	18, 122
HincII	GTYRAC	1 cut(s)	453
HindII	GTYRAC	1 cut(s)	453
HinfI	GANTC	2 cut(s)	86, 344
HpaII	CCGG	3 cut(s)	80, 168, 186
HphI	GGTGA	2 cut(s)	427, 473
Hpy166II	GTNNAC	2 cut(s)	402, 453
Hpy188I	TCNGA	1 cut(s)	249
Hpy188III	TCNNGA	2 cut(s)	277, 597
Hpy8I	GTNNAC	2 cut(s)	402, 453
HpyCH4III	ACNGT	2 cut(s)	223, 271
HpyCH4V	TGCA	5 cut(s)	38, 266, 341, 402, 491
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 107, 121
HspAI	GCGC	2 cut(s)	18, 122
Ksp22I	TGATCA	1 cut(s)	192
Kzo9I	GATC	5 cut(s)	73, 192, 297, 390, 531
LmnI	GCTCC	1 cut(s)	129
Lsp1109I	GCAGC	3 cut(s)	193, 250, 268
LweI	GCATC	3 cut(s)	25, 47, 328
MaeI	CTAG	1 cut(s)	21
MalI	GATC	5 cut(s)	75, 194, 299, 392, 533
MbiI	CCGCTC	1 cut(s)	15
MboI	GATC	5 cut(s)	73, 192, 297, 390, 531
MboII	GAAGA	3 cut(s)	339, 470, 526
MflI	RGATCY	3 cut(s)	297, 390, 531
MhlI	GDGCHC	2 cut(s)	404, 512
MluCI	AATT	4 cut(s)	324, 499, 554, 589
MlyI	GAGTC	2 cut(s)	95, 353
MnlI	CCTC	2 cut(s)	255, 379
Mph1103I	ATGCAT	1 cut(s)	40
MseI	TTAA	2 cut(s)	311, 333
MspA1I	CMGCKG	1 cut(s)	101
MspI	CCGG	3 cut(s)	80, 168, 186
MspR9I	CCNGG	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	3 cut(s)	49, 107, 121
NdeII	GATC	5 cut(s)	73, 192, 297, 390, 531
NlaIV	GGNNCC	2 cut(s)	114, 243
NsiI	ATGCAT	1 cut(s)	40
PkrI	GCNGC	4 cut(s)	17, 208, 258, 265
PleI	GAGTC	2 cut(s)	94, 352
PpsI	GAGTC	2 cut(s)	94, 352
PshBI	ATTAAT	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	2 cut(s)	114, 243
PspPI	GGNCC	1 cut(s)	541
PstI	CTGCAG	1 cut(s)	493
PsuI	RGATCY	3 cut(s)	297, 390, 531
PvuII	CAGCTG	1 cut(s)	101
RsaI	GTAC	2 cut(s)	225, 359
RsaNI	GTAC	2 cut(s)	224, 358
SaqAI	TTAA	2 cut(s)	311, 333
SatI	GCNGC	4 cut(s)	16, 207, 257, 264
Sau3AI	GATC	5 cut(s)	73, 192, 297, 390, 531
Sau96I	GGNCC	1 cut(s)	541
SchI	GAGTC	2 cut(s)	95, 353
ScrFI	CCNGG	1 cut(s)	117
SduI	GDGCHC	2 cut(s)	404, 512
SetI	ASST	5 cut(s)	103, 243, 265, 366, 401
SfaNI	GCATC	3 cut(s)	25, 47, 328
SfcI	CTRYAG	1 cut(s)	489
Sse9I	AATT	4 cut(s)	324, 499, 554, 589
SsiI	CCGC	5 cut(s)	15, 83, 110, 227, 254
SspMI	CTAG	1 cut(s)	21
StyD4I	CCNGG	1 cut(s)	115
TaaI	ACNGT	2 cut(s)	223, 271
TasI	AATT	4 cut(s)	324, 499, 554, 589
TauI	GCSGC	1 cut(s)	18
Tru1I	TTAA	2 cut(s)	311, 333
Tru9I	TTAA	2 cut(s)	311, 333
TscAI	CASTG	2 cut(s)	186, 409
TseI	GCWGC	3 cut(s)	206, 256, 263
TspDTI	ATGAA	1 cut(s)	470
TspGWI	ACGGA	1 cut(s)	20
TspRI	CASTG	2 cut(s)	186, 409
VneI	GTGCAC	1 cut(s)	400
VspI	ATTAAT	1 cut(s)	333
XcmI	CCANNNNNNNNNTGG	1 cut(s)	401
XspI	CTAG	1 cut(s)	21
Zsp2I	ATGCAT	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.