Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002688

Physical Location & Seq

Genomic Coordinates Reverse (-)

5578892 .. 5583902

Gene Structure 5011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0064400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2181 bp

ATGGGCTTACCGGAAATCGTCGGTTTTGCTCGGAATTTCGCCGTCATGGTCAGAGTCAAAGGCCCTGACCCCAAAGGCCTCAAAATGCGAAACCATGCTTTCCACCAGTACAACTCTGGGACGACGACTATATCAGCTTCCGGAATGTTATTGCCGGAAACCCTTTACGACGGTGAGGTCGCGAAGCAGCTATGCGGCGGCGGAAGTGACTGGTCACCGGCTCTGGTTGTGACTGTTGCTTCAGTTGTTGAGCCGTTTCTGTCTTTGCAACACAGAGAGAGCCTCGCCCAGGGCAGGCCTGAGTTGATTCCTGGGGTTGAGATTGATGTTATGGCAGAGGATGACATGTCGTTGGAGAAAGGACCTCCATGCTGGTTTGCAGCGCAGCTTTTAACCCTGATTGACGTTCCTGCATCTGCTTTTGCACTCCAATCTCTTATTGATGCTTCTATAAGCTCTCCAGAGCATGGATGGGAGGTCGGTTGGTCTTTAGCCTCACATTATAATCCTCAGCCAGTTATGGATGTTATTCAGACGCAGGTAAATTTGGCAGTTAGAGAATTGAGGAACGCAAGTCTTACGGGAAAGTCAACTACAAGAATCGCAATTCTTGGAGTATCCTTGCTTTCTAAGGATGTGCCAAATATAACTATATCACCCTCCAATAAAAGGGGAGACTTTCTTGTAGCAGTGGGTTCTCCTTTTGGTATCCTGTCACCTGTACACTTCTTTAACAGCATATCAGTGGGGTCCATTGCCAACTGCTATCCTCCTAATTCATCTTATAGTCCATTGCTGATGGCAGACATACGGTGTCTTCCTGGAGCGGAAGGTGGTCCAGTTTTGAGCGAGAATGCACAACTTATTGGTATGTTGATTAGACCATTGAGGCAGAAGACTAGCGGTGCTGAAGTTCAGCTGGTAATTTCGTGGGAAGCCATTGCAACTGCTTGCAGTGACTTGCTGCAGAAGGAGCCCCATTATGCAGAAAAGGGGATTTATTATGACAAAGGAAACTTAAATGCTGTAGGGAAAGCATTTTTAGCAAACACCAACGGCTCAAATGGACCCATAACGCATATTCAGGAGCATCTTTCTACTAGTTGCTCCCCATCAGCTGTTGAGAAGGCAATAACTTCTGTTTGTCTTATAACCATAGATGATGGAGTATGGGCATCTGGTGTTTTCCTCAACAAGCAAGGCCTGATACTCACAAATGCTCACCTCTTAGAACCATGGAGATTTGGTAAAAGGACTGCAAGTGACGGATCCATTTCTGAGGCTCCTCCCCTCCTATCCGACAGATCTCTATCTCCAGAGCAAAAGATTCAAGGCTTTCTGCCTGGGCTTCACAAGAATGGAGATCCCTCAGTTGGGAATGAACATGGAGCATTGAACTCATCTTACAAAGGCCATAGAAATATACGTGTCCGCCTGGATCATATGGACCCTTGGGTTTGGTGTGACGCCAAAGTAGTCTATGTTTGTAAAGGACCTTTAGATGTTGCCTTGTTACAGCTCCAGTGCATCCCAGATCAGCTTTCCCCAGTTGTCATGGACTTTTCATCGCCATCTTTAGGATCAAAGGCATACGTTATTGGACATGGACTGTTTGGACCCAGATGTGGCTTTTCCCCTTCAATTTGTTCTGGTGTGGTGGCAAAAGTTGTCAAAGCAAAGTTTCTACTCTCATATCAACCCAGTCAACCAGGAAATACTCGAGGGCACTCTCCTGTGATGCTTGAAACAACAGCAGCTGTCCATCCAGGTGGTAGTGGTGGTGCTGTTGTAAATTCAGATGGTCATATGATTGGGCTTGTTACAAGCAACGCTAGACATGGTGGAGGAACAGTTATACCACATCTGAACTTCAGCATTCCATGTGCAGCTCTCCTGCCAATTTTCAAGTTCTCAAAAGACATGCAAGATCTTTCACATCTTCAGGTTCTCGACCAACCAAACAAACATCTTTCTTCTGTATGGGCGTTGATGCCGCATCTGTCTCCAAAGCCCCCTCCTTTGCCTCATATGCAACAGTCATTACCAAATGATCACAACAAAGAAGAGAAAGGTTCTCGCTTTGCAAAATTTTTAGCTGAAAGACGAGATGTGTTTTCAAAGCCAACGCAGCTTAACAGGGCTGGAAGACTATTGAACGACATTGTTCCTAGCAAGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

726

Amino Acids

77.97

Weight (kDa)

7.35

Isoelectric Point (pI)

45.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trypsin_2	PF13365	183 - 291	7e-09	Trypsin-like peptidase domain
Trypsin_2	PF13365	392 - 606	1.5e-17	Trypsin-like peptidase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02620 FvH4_2g02630 FvH4_3g12970 FvH4_3g12970 FvH4_3g17180 FvH4_3g17181
malus_domestica	MD05G1246700.v1.1
prunus_persica	Prupe.4G117900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0153371 RchiOBHm_Chr5g0021081 RchiOBHm_Chr5g0021091 RchiOBHm_Chr5g0021101
rosa_laevigata	RLG00000032582 RLG00000032583 RLG00000032584 RLG00000032587
rosa_multiflora	Rmu_co7967648.1_g000001 Rmu_co8022450.1_g000001 Rmu_co8209284.1_g000001 Rmu_co8295101.1_g000001 Rmu_sc0002467.1_g000005 Rmu_sc0041861.1_g000001 Rmu_ssc0000244.1_g000020 Rmu_ssc0000244.1_g000027 Rmu_ssc0000244.1_g000028
rosa_roxburghii	Rroxscaffold_1G00057340 Rroxscaffold_1G00057380
rosa_rugosa	Rorug05G0064300 Rorug05G0064400 Rorug05G0064500 Rorug05G0064700
rosa_samantha	Rh2AG501400 Rh5CG166400 Rh5CG166500 Rh5CG166600 Rh5DG153100 Rh5DG153300 Rh5DG153400
rosa_wichuraiana	Rw5G013670 Rw5G013680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	504, 1151
AasI	GACNNNNNNGTC	1 cut(s)	176
Acc36I	ACCTGC	1 cut(s)	529
AccB7I	CCANNNNNTGG	1 cut(s)	467
AccBSI	CCGCTC	1 cut(s)	827
AccII	CGCG	1 cut(s)	182
AccIII	TCCGGA	1 cut(s)	140
AciI	CCGC	7 cut(s)	195, 198, 201, 827, 903, 1432, 1994
AclWI	GGATC	5 cut(s)	1263, 1276, 1358, 1446, 1588
AcsI	RAATTY	4 cut(s)	34, 544, 1792, 2087
AcuI	CTGAAG	4 cut(s)	225, 930, 1855, 1925
AcyI	GRCGYC	1 cut(s)	1467
AfaI	GTAC	2 cut(s)	110, 723
AfiI	CCNNNNNNNGG	8 cut(s)	289, 294, 467, 669, 1373, 1374, 1577, 1625
AflIII	ACRYGT	2 cut(s)	345, 1426
AgsI	TTSAA	7 cut(s)	1331, 1396, 1641, 1745, 1906, 2118, 2155
AhlI	ACTAGT	1 cut(s)	1100
AjnI	CCWGG	7 cut(s)	288, 310, 820, 1342, 1434, 1708, 1765
Alw26I	GTCTC	2 cut(s)	669, 2007
AlwI	GGATC	5 cut(s)	1263, 1276, 1358, 1446, 1588
AlwNI	CAGNNNCTG	1 cut(s)	1757
Ama87I	CYCGRG	1 cut(s)	1719
Aor13HI	TCCGGA	1 cut(s)	140
AoxI	GGCC	5 cut(s)	61, 76, 296, 1201, 1411
ApeKI	GCWGC	7 cut(s)	187, 380, 385, 964, 1754, 1886, 2128
ApoI	RAATTY	4 cut(s)	34, 544, 1792, 2087
AspLEI	GCGC	1 cut(s)	385
AspS9I	GGNCC	8 cut(s)	62, 362, 750, 836, 1067, 1447, 1493, 1616
AsuHPI	GGTGA	5 cut(s)	185, 207, 648, 708, 1214
AvaI	CYCGRG	1 cut(s)	1719
AvaII	GGWCC	7 cut(s)	362, 750, 836, 1067, 1447, 1493, 1616
BaeGI	GKGCMC	1 cut(s)	1728
BamHI	GGATCC	1 cut(s)	1268
BanII	GRGCYC	1 cut(s)	978
BbsI	GAAGAC	3 cut(s)	809, 902, 2152
BbvCI	CCTCAGC	1 cut(s)	510
BbvI	GCAGC	7 cut(s)	199, 392, 397, 951, 1766, 1898, 2140
BccI	CCATC	7 cut(s)	465, 793, 1120, 1157, 1579, 1770, 1793
BceAI	ACGGC	3 cut(s)	26, 238, 1072
BciT130I	CCWGG	7 cut(s)	290, 312, 822, 1344, 1436, 1710, 1767
BciVI	GTATCC	2 cut(s)	628, 719
BclI	TGATCA	1 cut(s)	2050
BcoDI	GTCTC	2 cut(s)	669, 2007
BcuI	ACTAGT	1 cut(s)	1100
BfaI	CTAG	4 cut(s)	900, 1101, 1833, 2169
BfmI	CTRYAG	2 cut(s)	965, 1026
BfuAI	ACCTGC	1 cut(s)	529
BfuI	GTATCC	2 cut(s)	628, 719
BglII	AGATCT	2 cut(s)	1304, 1927
Bme1390I	CCNGG	7 cut(s)	290, 312, 822, 1344, 1436, 1710, 1767
Bme18I	GGWCC	7 cut(s)	362, 750, 836, 1067, 1447, 1493, 1616
BmeT110I	CYCGRG	1 cut(s)	1719
BmgT120I	GGNCC	8 cut(s)	62, 362, 750, 836, 1067, 1447, 1493, 1616
BmiI	GGNNCC	7 cut(s)	751, 975, 1069, 1270, 1284, 1449, 1618
BmrFI	CCNGG	7 cut(s)	290, 312, 822, 1344, 1436, 1710, 1767
BmrI	ACTGGG	2 cut(s)	1541, 1695
BmsI	GCATC	8 cut(s)	422, 433, 1099, 1184, 1536, 1728, 1980, 2005
BmuI	ACTGGG	2 cut(s)	1541, 1695
BpiI	GAAGAC	3 cut(s)	809, 902, 2152
BplI	GAGNNNNNCTC	2 cut(s)	267, 299
BpmI	CTGGAG	4 cut(s)	444, 843, 1299, 1505
Bpu10I	CCTNAGC	1 cut(s)	510
BsaAI	YACGTR	1 cut(s)	1427
BsaBI	GATNNNNATC	1 cut(s)	1309
BsaHI	GRCGYC	1 cut(s)	1467
BsaJI	CCNNGG	6 cut(s)	288, 289, 311, 1235, 1343, 1451
BsaWI	WCCGGW	2 cut(s)	10, 140
BsaXI	ACNNNNNCTCC	4 cut(s)	1231, 1261, 1836, 1866
Bsc4I	CCNNNNNNNGG	8 cut(s)	289, 294, 467, 669, 1373, 1374, 1577, 1625
Bse118I	RCCGGY	1 cut(s)	217
Bse1I	ACTGG	7 cut(s)	106, 215, 515, 839, 1522, 1547, 1701
Bse3DI	GCAATG	3 cut(s)	753, 791, 939
Bse8I	GATNNNNATC	1 cut(s)	1309
BseAI	TCCGGA	1 cut(s)	140
BseBI	CCWGG	7 cut(s)	290, 312, 822, 1344, 1436, 1710, 1767
BseDI	CCNNGG	6 cut(s)	288, 289, 311, 1235, 1343, 1451
BseGI	GGATG	6 cut(s)	346, 476, 529, 640, 1527, 1762
BseJI	GATNNNNATC	1 cut(s)	1309
BseLI	CCNNNNNNNGG	8 cut(s)	289, 294, 467, 669, 1373, 1374, 1577, 1625
BseMI	GCAATG	3 cut(s)	753, 791, 939
BseMII	CTCAG	4 cut(s)	291, 524, 1269, 1383
BseNI	ACTGG	7 cut(s)	106, 215, 515, 839, 1522, 1547, 1701
BseRI	GAGGAG	1 cut(s)	1275
BseSI	GKGCMC	1 cut(s)	1728
BseXI	GCAGC	7 cut(s)	199, 392, 397, 951, 1766, 1898, 2140
BsgI	GTGCAG	1 cut(s)	1905
Bsh1236I	CGCG	1 cut(s)	182
BshFI	GGCC	5 cut(s)	63, 78, 298, 1203, 1413
BsiHKCI	CYCGRG	1 cut(s)	1719
BsiSI	CCGG	4 cut(s)	11, 141, 155, 218
BslFI	GGGAC	1 cut(s)	133
BslI	CCNNNNNNNGG	8 cut(s)	289, 294, 467, 669, 1373, 1374, 1577, 1625
BsmAI	GTCTC	2 cut(s)	669, 2007
BsmFI	GGGAC	1 cut(s)	133
BsmI	GAATGC	2 cut(s)	859, 1875
BsnI	GGCC	5 cut(s)	63, 78, 298, 1203, 1413
BsoBI	CYCGRG	1 cut(s)	1719
Bsp1286I	GDGCHC	2 cut(s)	978, 1728
Bsp13I	TCCGGA	1 cut(s)	140
Bsp1407I	TGTACA	1 cut(s)	721
Bsp143I	GATC	8 cut(s)	1268, 1304, 1363, 1438, 1534, 1580, 1927, 2050
Bsp19I	CCATGG	1 cut(s)	1235
Bsp68I	TCGCGA	1 cut(s)	182
BspACI	CCGC	7 cut(s)	195, 198, 201, 827, 903, 1432, 1994
BspANI	GGCC	5 cut(s)	63, 78, 298, 1203, 1413
BspCNI	CTCAG	4 cut(s)	292, 523, 1270, 1382
BspEI	TCCGGA	1 cut(s)	140
BspFNI	CGCG	1 cut(s)	182
BspLI	GGNNCC	7 cut(s)	751, 975, 1069, 1270, 1284, 1449, 1618
BspMAI	CTGCAG	1 cut(s)	969
BspMI	ACCTGC	1 cut(s)	529
BspPI	GGATC	5 cut(s)	1263, 1276, 1358, 1446, 1588
BsrBI	CCGCTC	1 cut(s)	827
BsrDI	GCAATG	3 cut(s)	753, 791, 939
BsrFI	RCCGGY	1 cut(s)	217
BsrGI	TGTACA	1 cut(s)	721
BsrI	ACTGG	7 cut(s)	106, 215, 515, 839, 1522, 1547, 1701
BssAI	RCCGGY	1 cut(s)	217
BssECI	CCNNGG	6 cut(s)	288, 289, 311, 1235, 1343, 1451
BssMI	GATC	8 cut(s)	1268, 1304, 1363, 1438, 1534, 1580, 1927, 2050
BssNI	GRCGYC	1 cut(s)	1467
BssT1I	CCWWGG	2 cut(s)	1235, 1451
Bst2UI	CCWGG	7 cut(s)	290, 312, 822, 1344, 1436, 1710, 1767
Bst4CI	ACNGT	6 cut(s)	173, 235, 813, 1611, 1852, 2037
Bst6I	CTCTTC	1 cut(s)	2058
BstACI	GRCGYC	1 cut(s)	1467
BstAUI	TGTACA	1 cut(s)	721
BstBAI	YACGTR	1 cut(s)	1427
BstC8I	GCNNGC	2 cut(s)	296, 952
BstDEI	CTNAG	6 cut(s)	300, 510, 630, 1228, 1278, 1369
BstDSI	CCRYGG	1 cut(s)	1235
BstEII	GGTNACC	1 cut(s)	213
BstENI	CCTNNNNNAGG	1 cut(s)	287
BstF5I	GGATG	6 cut(s)	346, 476, 529, 640, 1527, 1762
BstFNI	CGCG	1 cut(s)	182
BstHHI	GCGC	1 cut(s)	385
BstKTI	GATC	8 cut(s)	1271, 1307, 1366, 1441, 1537, 1583, 1930, 2053
BstMAI	GTCTC	2 cut(s)	669, 2007
BstMBI	GATC	8 cut(s)	1268, 1304, 1363, 1438, 1534, 1580, 1927, 2050
BstMWI	GCNNNNNNNGC	4 cut(s)	973, 1043, 2029, 2128
BstNI	CCWGG	7 cut(s)	290, 312, 822, 1344, 1436, 1710, 1767
BstNSI	RCATGY	2 cut(s)	349, 1924
BstPI	GGTNACC	1 cut(s)	213
BstSCI	CCNGG	7 cut(s)	288, 310, 820, 1342, 1434, 1708, 1765
BstSFI	CTRYAG	2 cut(s)	965, 1026
BstSLI	GKGCMC	1 cut(s)	1728
BstUI	CGCG	1 cut(s)	182
BstV1I	GCAGC	7 cut(s)	199, 392, 397, 951, 1766, 1898, 2140
BstV2I	GAAGAC	3 cut(s)	809, 902, 2152
BstX2I	RGATCY	4 cut(s)	1268, 1304, 1363, 1927
BstXI	CCANNNNNNTGG	1 cut(s)	1769
BstYI	RGATCY	4 cut(s)	1268, 1304, 1363, 1927
BsuI	GTATCC	2 cut(s)	628, 719
BsuRI	GGCC	5 cut(s)	63, 78, 298, 1203, 1413
BtgI	CCRYGG	1 cut(s)	1235
BtgZI	GCGATG	1 cut(s)	1551
BtsCI	GGATG	6 cut(s)	346, 476, 529, 640, 1527, 1762
BtsI	GCAGTG	2 cut(s)	696, 961
BtsIMutI	CAGTG	4 cut(s)	696, 750, 961, 1529
BtuMI	TCGCGA	1 cut(s)	182
BveI	ACCTGC	1 cut(s)	529
Cac8I	GCNNGC	2 cut(s)	296, 952
CaiI	CAGNNNCTG	1 cut(s)	1757
CfoI	GCGC	1 cut(s)	385
Cfr10I	RCCGGY	1 cut(s)	217
Cfr13I	GGNCC	8 cut(s)	62, 362, 750, 836, 1067, 1447, 1493, 1616
CseI	GACGC	2 cut(s)	544, 1475
Csp6I	GTAC	2 cut(s)	109, 722
CviQI	GTAC	2 cut(s)	109, 722
DdeI	CTNAG	6 cut(s)	300, 510, 630, 1228, 1278, 1369
DpnI	GATC	8 cut(s)	1270, 1306, 1365, 1440, 1536, 1582, 1929, 2052
DpnII	GATC	8 cut(s)	1268, 1304, 1363, 1438, 1534, 1580, 1927, 2050
DrdI	GACNNNNNNGTC	1 cut(s)	176
DseDI	GACNNNNNNGTC	1 cut(s)	176
Eam1104I	CTCTTC	1 cut(s)	2058
EarI	CTCTTC	1 cut(s)	2058
EciI	GGCGGA	2 cut(s)	216, 1421
Eco130I	CCWWGG	2 cut(s)	1235, 1451
Eco147I	AGGCCT	3 cut(s)	78, 298, 1203
Eco24I	GRGCYC	1 cut(s)	978
Eco47I	GGWCC	7 cut(s)	362, 750, 836, 1067, 1447, 1493, 1616
Eco57I	CTGAAG	4 cut(s)	225, 930, 1855, 1925
Eco88I	CYCGRG	1 cut(s)	1719
Eco91I	GGTNACC	1 cut(s)	213
EcoNI	CCTNNNNNAGG	1 cut(s)	287
EcoO109I	RGGNCCY	3 cut(s)	62, 362, 1493
EcoO65I	GGTNACC	1 cut(s)	213
EcoRII	CCWGG	7 cut(s)	288, 310, 820, 1342, 1434, 1708, 1765
EcoT14I	CCWWGG	2 cut(s)	1235, 1451
EcoT38I	GRGCYC	1 cut(s)	978
ErhI	CCWWGG	2 cut(s)	1235, 1451
FaqI	GGGAC	1 cut(s)	133
FauNDI	CATATG	3 cut(s)	1443, 1806, 2028
FbaI	TGATCA	1 cut(s)	2050
FokI	GGATG	6 cut(s)	353, 483, 536, 647, 1514, 1749
FriOI	GRGCYC	1 cut(s)	978
FspBI	CTAG	4 cut(s)	900, 1101, 1833, 2169
GlaI	GCGC	1 cut(s)	384
GsuI	CTGGAG	4 cut(s)	444, 843, 1299, 1505
HaeIII	GGCC	5 cut(s)	63, 78, 298, 1203, 1413
HapII	CCGG	4 cut(s)	11, 141, 155, 218
HgaI	GACGC	2 cut(s)	544, 1475
HhaI	GCGC	1 cut(s)	385
Hin1I	GRCGYC	1 cut(s)	1467
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
HincII	GTYRAC	2 cut(s)	591, 1706
HindII	GTYRAC	2 cut(s)	591, 1706
HinfI	GANTC	4 cut(s)	54, 307, 600, 1327
HpaII	CCGG	4 cut(s)	11, 141, 155, 218
HphI	GGTGA	5 cut(s)	185, 207, 648, 708, 1214
Hpy166II	GTNNAC	3 cut(s)	591, 724, 1706
Hpy188I	TCNGA	7 cut(s)	33, 53, 534, 1279, 1300, 1798, 1866
Hpy188III	TCNNGA	6 cut(s)	141, 181, 461, 1085, 1316, 1949
Hpy8I	GTNNAC	3 cut(s)	591, 724, 1706
Hpy99I	CGWCG	3 cut(s)	23, 127, 173
HpyAV	CCTTC	4 cut(s)	824, 964, 1120, 1647
HpyCH4III	ACNGT	6 cut(s)	173, 235, 813, 1611, 1852, 2037
HpyCH4IV	ACGT	3 cut(s)	405, 1426, 1593
HpyF10VI	GCNNNNNNNGC	4 cut(s)	973, 1043, 2029, 2128
HpyF3I	CTNAG	6 cut(s)	300, 510, 630, 1228, 1278, 1369
HpySE526I	ACGT	3 cut(s)	405, 1426, 1593
Hsp92I	GRCGYC	1 cut(s)	1467
HspAI	GCGC	1 cut(s)	383
Kpn2I	TCCGGA	1 cut(s)	140
Ksp22I	TGATCA	1 cut(s)	2050
Kzo9I	GATC	8 cut(s)	1268, 1304, 1363, 1438, 1534, 1580, 1927, 2050
LmnI	GCTCC	7 cut(s)	824, 973, 1087, 1112, 1288, 1388, 1524
Lsp1109I	GCAGC	7 cut(s)	199, 392, 397, 951, 1766, 1898, 2140
LweI	GCATC	8 cut(s)	422, 433, 1099, 1184, 1536, 1728, 1980, 2005
MaeI	CTAG	4 cut(s)	900, 1101, 1833, 2169
MaeII	ACGT	3 cut(s)	405, 1426, 1593
MaeIII	GTNAC	9 cut(s)	206, 213, 229, 714, 956, 1262, 1463, 1512, 1819
MalI	GATC	8 cut(s)	1270, 1306, 1365, 1440, 1536, 1582, 1929, 2052
MbiI	CCGCTC	1 cut(s)	827
MboI	GATC	8 cut(s)	1268, 1304, 1363, 1438, 1534, 1580, 1927, 2050
MboII	GAAGA	6 cut(s)	809, 907, 1931, 1965, 2075, 2157
MflI	RGATCY	4 cut(s)	1268, 1304, 1363, 1927
MhlI	GDGCHC	2 cut(s)	978, 1728
MlyI	GAGTC	1 cut(s)	63
MmeI	TCCRAC	2 cut(s)	333, 1323
MroI	TCCGGA	1 cut(s)	140
MseI	TTAA	4 cut(s)	392, 732, 1019, 2133
MslI	CAYNNNNRTG	3 cut(s)	743, 1356, 1767
MspA1I	CMGCKG	3 cut(s)	919, 1118, 1757
MspI	CCGG	4 cut(s)	11, 141, 155, 218
MspR9I	CCNGG	7 cut(s)	290, 312, 822, 1344, 1436, 1710, 1767
Mva1269I	GAATGC	2 cut(s)	859, 1875
MvaI	CCWGG	7 cut(s)	290, 312, 822, 1344, 1436, 1710, 1767
MvnI	CGCG	1 cut(s)	182
MwoI	GCNNNNNNNGC	4 cut(s)	973, 1043, 2029, 2128
NcoI	CCATGG	1 cut(s)	1235
NdeI	CATATG	3 cut(s)	1443, 1806, 2028
NdeII	GATC	8 cut(s)	1268, 1304, 1363, 1438, 1534, 1580, 1927, 2050
NlaIV	GGNNCC	7 cut(s)	751, 975, 1069, 1270, 1284, 1449, 1618
NmuCI	GTSAC	7 cut(s)	206, 213, 229, 714, 956, 1262, 1463
NruI	TCGCGA	1 cut(s)	182
NspI	RCATGY	2 cut(s)	349, 1924
PaeR7I	CTCGAG	1 cut(s)	1719
PasI	CCCWGGG	1 cut(s)	289
PceI	AGGCCT	3 cut(s)	78, 298, 1203
PciI	ACATGT	1 cut(s)	345
PctI	GAATGC	2 cut(s)	859, 1875
PfeI	GAWTC	3 cut(s)	307, 600, 1327
PflMI	CCANNNNNTGG	1 cut(s)	467
PfoI	TCCNGGA	1 cut(s)	820
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
Ppu21I	YACGTR	1 cut(s)	1427
PpuMI	RGGWCCY	2 cut(s)	362, 1493
PscI	ACATGT	1 cut(s)	345
PsiI	TTATAA	2 cut(s)	504, 1151
Psp5II	RGGWCCY	2 cut(s)	362, 1493
Psp6I	CCWGG	7 cut(s)	288, 310, 820, 1342, 1434, 1708, 1765
PspEI	GGTNACC	1 cut(s)	213
PspGI	CCWGG	7 cut(s)	288, 310, 820, 1342, 1434, 1708, 1765
PspN4I	GGNNCC	7 cut(s)	751, 975, 1069, 1270, 1284, 1449, 1618
PspPI	GGNCC	8 cut(s)	62, 362, 750, 836, 1067, 1447, 1493, 1616
PspPPI	RGGWCCY	2 cut(s)	362, 1493
PspXI	VCTCGAGB	1 cut(s)	1719
PsrI	GAACNNNNNNTAC	2 cut(s)	1388, 1420
PstI	CTGCAG	1 cut(s)	969
PstNI	CAGNNNCTG	1 cut(s)	1757
PsuI	RGATCY	4 cut(s)	1268, 1304, 1363, 1927
PvuII	CAGCTG	3 cut(s)	919, 1118, 1757
RruI	TCGCGA	1 cut(s)	182
RsaI	GTAC	2 cut(s)	110, 723
RsaNI	GTAC	2 cut(s)	109, 722
RseI	CAYNNNNRTG	3 cut(s)	743, 1356, 1767
SaqAI	TTAA	4 cut(s)	392, 732, 1019, 2133
Sau3AI	GATC	8 cut(s)	1268, 1304, 1363, 1438, 1534, 1580, 1927, 2050
Sau96I	GGNCC	8 cut(s)	62, 362, 750, 836, 1067, 1447, 1493, 1616
SchI	GAGTC	1 cut(s)	63
ScrFI	CCNGG	7 cut(s)	290, 312, 822, 1344, 1436, 1710, 1767
SduI	GDGCHC	2 cut(s)	978, 1728
SfaNI	GCATC	8 cut(s)	422, 433, 1099, 1184, 1536, 1728, 1980, 2005
SfcI	CTRYAG	2 cut(s)	965, 1026
Sfr274I	CTCGAG	1 cut(s)	1719
SinI	GGWCC	7 cut(s)	362, 750, 836, 1067, 1447, 1493, 1616
SlaI	CTCGAG	1 cut(s)	1719
SmiMI	CAYNNNNRTG	3 cut(s)	743, 1356, 1767
SmlI	CTYRAG	1 cut(s)	1719
SmoI	CTYRAG	1 cut(s)	1719
SpeI	ACTAGT	1 cut(s)	1100
SseBI	AGGCCT	3 cut(s)	78, 298, 1203
SsiI	CCGC	7 cut(s)	195, 198, 201, 827, 903, 1432, 1994
SspMI	CTAG	4 cut(s)	900, 1101, 1833, 2169
StuI	AGGCCT	3 cut(s)	78, 298, 1203
StyD4I	CCNGG	7 cut(s)	288, 310, 820, 1342, 1434, 1708, 1765
StyI	CCWWGG	2 cut(s)	1235, 1451
TaaI	ACNGT	6 cut(s)	173, 235, 813, 1611, 1852, 2037
TaiI	ACGT	3 cut(s)	408, 1429, 1596
TaqI	TCGA	2 cut(s)	1720, 1950
TatI	WGTACW	2 cut(s)	108, 721
TauI	GCSGC	3 cut(s)	198, 201, 1996
TfiI	GAWTC	3 cut(s)	307, 600, 1327
Tru1I	TTAA	4 cut(s)	392, 732, 1019, 2133
Tru9I	TTAA	4 cut(s)	392, 732, 1019, 2133
TscAI	CASTG	4 cut(s)	696, 750, 961, 1529
TseFI	GTSAC	7 cut(s)	206, 213, 229, 714, 956, 1262, 1463
TseI	GCWGC	7 cut(s)	187, 380, 385, 964, 1754, 1886, 2128
Tsp45I	GTSAC	7 cut(s)	206, 213, 229, 714, 956, 1262, 1463
TspDTI	ATGAA	3 cut(s)	768, 1395, 1554
TspGWI	ACGGA	1 cut(s)	1281
TspRI	CASTG	4 cut(s)	696, 750, 961, 1529
Van91I	CCANNNNNTGG	1 cut(s)	467
VpaK11BI	GGWCC	7 cut(s)	362, 750, 836, 1067, 1447, 1493, 1616
XagI	CCTNNNNNAGG	1 cut(s)	287
XapI	RAATTY	4 cut(s)	34, 544, 1792, 2087
XceI	RCATGY	2 cut(s)	349, 1924
XcmI	CCANNNNNNNNNTGG	2 cut(s)	113, 468
XhoI	CTCGAG	1 cut(s)	1719
XspI	CTAG	4 cut(s)	900, 1101, 1833, 2169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.