Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002688

Physical Location & Seq

Genomic Coordinates Forward (+)

72401516 .. 72420654

Gene Structure 19139 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG501400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTTGATTTGGCAACTATATAGAAAGACTATCATCATTGTTCTAGGACCTAATTTACTCCCTGGAATTAACACGGAGAGACCAAGGGTATTTTGGTTAACTTTCTTGAAGCTCGAATCTCACGCGCTTCAGTCTCTGAGTGCTAACGGTAAGATCCCTCCGGTGTACCTCGTGGGACCCATACTGAACATCAAGAGCAATGATAACCAAGTGGGTTCGGAGAAGTCGAAGCAGAAGTCGGAAATCTTGAAGTGGCTTGATGACCAGCCTCCGTTGTCTGTACTGTTTTTGTGCTTCGGGAGCATGGGATGCTTTGGCGAGGACCAAGTAAAAGAGATCGCACACGAACTCGAGCAAGCTGGGTTTCGTTTCTTGTGGTCTCTACGCCACCCCCCGAAGAGCAAGATTGATTTTCCAAGTGATTACGCGGATTACAGTACAATCTTACCTAGAAGGGCTTCTCGATCGAACGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008194 GO:0008300 GO:0009056 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0033993 GO:0035251 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046345 GO:0046395 GO:0046527 GO:0050896 GO:0071704 GO:0072329 GO:0080043 GO:0080044 GO:0080046 GO:0097305 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

158

Amino Acids

17.97

Weight (kDa)

9.14

Isoelectric Point (pI)

45.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02620 FvH4_2g02630 FvH4_3g12970 FvH4_3g12970 FvH4_3g17180 FvH4_3g17181
malus_domestica	MD05G1246700.v1.1
prunus_persica	Prupe.4G117900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0153371 RchiOBHm_Chr5g0021081 RchiOBHm_Chr5g0021091 RchiOBHm_Chr5g0021101
rosa_laevigata	RLG00000032582 RLG00000032583 RLG00000032584 RLG00000032587
rosa_multiflora	Rmu_co7967648.1_g000001 Rmu_co8022450.1_g000001 Rmu_co8209284.1_g000001 Rmu_co8295101.1_g000001 Rmu_sc0002467.1_g000005 Rmu_sc0041861.1_g000001 Rmu_ssc0000244.1_g000020 Rmu_ssc0000244.1_g000027 Rmu_ssc0000244.1_g000028
rosa_roxburghii	Rroxscaffold_1G00057340 Rroxscaffold_1G00057380
rosa_rugosa	Rorug05G0064300 Rorug05G0064400 Rorug05G0064500 Rorug05G0064700
rosa_samantha	Rh2AG501400 Rh5CG166400 Rh5CG166500 Rh5CG166600 Rh5DG153100 Rh5DG153300 Rh5DG153400
rosa_wichuraiana	Rw5G013670 Rw5G013680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	125, 428
AciI	CCGC	1 cut(s)	428
AclWI	GGATC	1 cut(s)	148
AcuI	CTGAAG	1 cut(s)	113
AfaI	GTAC	3 cut(s)	167, 282, 439
AgsI	TTSAA	2 cut(s)	109, 250
AjnI	CCWGG	1 cut(s)	61
AluBI	AGCT	2 cut(s)	112, 359
AluI	AGCT	2 cut(s)	112, 359
Alw26I	GTCTC	3 cut(s)	73, 138, 384
AlwI	GGATC	1 cut(s)	148
AlwNI	CAGNNNCTG	1 cut(s)	136
Ama87I	CYCGRG	1 cut(s)	350
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
Asp700I	GAANNNNTTC	1 cut(s)	457
AspLEI	GCGC	1 cut(s)	127
AspS9I	GGNCC	3 cut(s)	47, 176, 322
AvaI	CYCGRG	1 cut(s)	350
AvaII	GGWCC	3 cut(s)	47, 176, 322
BauI	CACGAG	1 cut(s)	170
BciT130I	CCWGG	1 cut(s)	63
BcoDI	GTCTC	3 cut(s)	73, 138, 384
BfaI	CTAG	2 cut(s)	44, 450
Bme1390I	CCNGG	1 cut(s)	63
Bme18I	GGWCC	3 cut(s)	47, 176, 322
BmeT110I	CYCGRG	1 cut(s)	350
BmgT120I	GGNCC	3 cut(s)	47, 176, 322
BmiI	GGNNCC	2 cut(s)	177, 178
BmrFI	CCNGG	1 cut(s)	63
BmsI	GCATC	1 cut(s)	299
BsaI	GGTCTC	2 cut(s)	73, 384
BsaJI	CCNNGG	2 cut(s)	61, 83
BsaWI	WCCGGW	1 cut(s)	160
Bse3DI	GCAATG	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	63
BseDI	CCNNGG	2 cut(s)	61, 83
BseGI	GGATG	1 cut(s)	314
BseMI	GCAATG	1 cut(s)	205
BseMII	CTCAG	1 cut(s)	128
BseYI	CCCAGC	1 cut(s)	359
Bsh1236I	CGCG	2 cut(s)	125, 428
Bsh1285I	CGRYCG	1 cut(s)	467
BsiEI	CGRYCG	1 cut(s)	467
BsiHKCI	CYCGRG	1 cut(s)	350
BsiSI	CCGG	1 cut(s)	161
BslFI	GGGAC	1 cut(s)	189
BsmAI	GTCTC	3 cut(s)	73, 138, 384
BsmFI	GGGAC	1 cut(s)	189
Bso31I	GGTCTC	2 cut(s)	73, 384
BsoBI	CYCGRG	1 cut(s)	350
Bsp143I	GATC	3 cut(s)	153, 336, 464
BspACI	CCGC	1 cut(s)	428
BspCNI	CTCAG	1 cut(s)	129
BspFNI	CGCG	2 cut(s)	125, 428
BspLI	GGNNCC	2 cut(s)	177, 178
BspPI	GGATC	1 cut(s)	148
BspQI	GCTCTTC	1 cut(s)	392
BspTNI	GGTCTC	2 cut(s)	73, 384
BsrDI	GCAATG	1 cut(s)	205
BssECI	CCNNGG	2 cut(s)	61, 83
BssMI	GATC	3 cut(s)	153, 336, 464
BssSI	CACGAG	1 cut(s)	170
BssT1I	CCWWGG	1 cut(s)	83
Bst2BI	CACGAG	1 cut(s)	170
Bst2UI	CCWGG	1 cut(s)	63
Bst4CI	ACNGT	4 cut(s)	149, 285, 437, 473
Bst6I	CTCTTC	1 cut(s)	392
BstAPI	GCANNNNNTGC	1 cut(s)	309
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	1 cut(s)	137
BstF5I	GGATG	1 cut(s)	314
BstFNI	CGCG	2 cut(s)	125, 428
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	3 cut(s)	156, 339, 467
BstMAI	GTCTC	3 cut(s)	73, 138, 384
BstMBI	GATC	3 cut(s)	153, 336, 464
BstMCI	CGRYCG	1 cut(s)	467
BstMWI	GCNNNNNNNGC	2 cut(s)	300, 309
BstNI	CCWGG	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	61
BstUI	CGCG	2 cut(s)	125, 428
BstX2I	RGATCY	1 cut(s)	153
BstYI	RGATCY	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	314
Cac8I	GCNNGC	1 cut(s)	357
CaiI	CAGNNNCTG	1 cut(s)	136
CfoI	GCGC	1 cut(s)	127
Cfr13I	GGNCC	3 cut(s)	47, 176, 322
Csp6I	GTAC	3 cut(s)	166, 281, 438
CviAII	CATG	1 cut(s)	304
CviJI	RGCY	5 cut(s)	112, 256, 268, 359, 458
CviKI_1	RGCY	5 cut(s)	112, 256, 268, 359, 458
CviQI	GTAC	3 cut(s)	166, 281, 438
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	3 cut(s)	155, 338, 466
DpnII	GATC	3 cut(s)	153, 336, 464
Eam1104I	CTCTTC	1 cut(s)	392
EarI	CTCTTC	1 cut(s)	392
Eco130I	CCWWGG	1 cut(s)	83
Eco31I	GGTCTC	2 cut(s)	73, 384
Eco47I	GGWCC	3 cut(s)	47, 176, 322
Eco57I	CTGAAG	1 cut(s)	113
Eco88I	CYCGRG	1 cut(s)	350
EcoO109I	RGGNCCY	2 cut(s)	47, 176
EcoRII	CCWGG	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	83
ErhI	CCWWGG	1 cut(s)	83
FaeI	CATG	1 cut(s)	307
FaiI	YATR	4 cut(s)	19, 21, 182, 305
FaqI	GGGAC	1 cut(s)	189
FatI	CATG	1 cut(s)	303
FokI	GGATG	1 cut(s)	321
FspBI	CTAG	2 cut(s)	44, 450
GlaI	GCGC	1 cut(s)	126
GsaI	CCCAGC	1 cut(s)	363
HapII	CCGG	1 cut(s)	161
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	1 cut(s)	307
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HincII	GTYRAC	1 cut(s)	99
HindII	GTYRAC	1 cut(s)	99
HinfI	GANTC	1 cut(s)	116
HpaI	GTTAAC	1 cut(s)	99
HpaII	CCGG	1 cut(s)	161
Hpy166II	GTNNAC	2 cut(s)	99, 166
Hpy188I	TCNGA	3 cut(s)	138, 220, 241
Hpy188III	TCNNGA	5 cut(s)	106, 193, 247, 298, 462
Hpy8I	GTNNAC	2 cut(s)	99, 166
HpyAV	CCTTC	1 cut(s)	447
HpyCH4III	ACNGT	4 cut(s)	149, 285, 437, 473
HpyF10VI	GCNNNNNNNGC	2 cut(s)	300, 309
HpyF3I	CTNAG	1 cut(s)	137
Hsp92II	CATG	1 cut(s)	307
HspAI	GCGC	1 cut(s)	125
KflI	GGGWCCC	1 cut(s)	176
KspAI	GTTAAC	1 cut(s)	99
Kzo9I	GATC	3 cut(s)	153, 336, 464
LguI	GCTCTTC	1 cut(s)	392
LmnI	GCTCC	1 cut(s)	300
LpnPI	CCDG	5 cut(s)	48, 75, 174, 278, 345
LweI	GCATC	1 cut(s)	299
MaeI	CTAG	2 cut(s)	44, 450
MalI	GATC	3 cut(s)	155, 338, 466
MboI	GATC	3 cut(s)	153, 336, 464
MboII	GAAGA	1 cut(s)	409
MflI	RGATCY	1 cut(s)	153
MluCI	AATT	2 cut(s)	52, 66
MmeI	TCCRAC	1 cut(s)	219
MnlI	CCTC	4 cut(s)	168, 179, 279, 313
MroXI	GAANNNNTTC	1 cut(s)	457
MseI	TTAA	2 cut(s)	69, 98
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	63
MvaI	CCWGG	1 cut(s)	63
MvnI	CGCG	2 cut(s)	125, 428
MwoI	GCNNNNNNNGC	2 cut(s)	300, 309
NdeII	GATC	3 cut(s)	153, 336, 464
NlaIII	CATG	1 cut(s)	307
NlaIV	GGNNCC	2 cut(s)	177, 178
PaeR7I	CTCGAG	1 cut(s)	350
PciSI	GCTCTTC	1 cut(s)	392
PcsI	WCGNNNNNNNCGW	1 cut(s)	224
PdmI	GAANNNNTTC	1 cut(s)	457
PfeI	GAWTC	1 cut(s)	116
Ple19I	CGATCG	1 cut(s)	467
PpuMI	RGGWCCY	2 cut(s)	47, 176
Psp5II	RGGWCCY	2 cut(s)	47, 176
Psp6I	CCWGG	1 cut(s)	61
PspFI	CCCAGC	1 cut(s)	359
PspGI	CCWGG	1 cut(s)	61
PspN4I	GGNNCC	2 cut(s)	177, 178
PspPI	GGNCC	3 cut(s)	47, 176, 322
PspPPI	RGGWCCY	2 cut(s)	47, 176
PspXI	VCTCGAGB	1 cut(s)	350
PstNI	CAGNNNCTG	1 cut(s)	136
PsuI	RGATCY	1 cut(s)	153
PvuI	CGATCG	1 cut(s)	467
RsaI	GTAC	3 cut(s)	167, 282, 439
RsaNI	GTAC	3 cut(s)	166, 281, 438
SapI	GCTCTTC	1 cut(s)	392
SaqAI	TTAA	2 cut(s)	69, 98
Sau3AI	GATC	3 cut(s)	153, 336, 464
Sau96I	GGNCC	3 cut(s)	47, 176, 322
ScrFI	CCNGG	1 cut(s)	63
SetI	ASST	5 cut(s)	52, 114, 171, 361, 451
SfaNI	GCATC	1 cut(s)	299
Sfr274I	CTCGAG	1 cut(s)	350
SinI	GGWCC	3 cut(s)	47, 176, 322
SlaI	CTCGAG	1 cut(s)	350
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	2 cut(s)	52, 66
SsiI	CCGC	1 cut(s)	428
SspMI	CTAG	2 cut(s)	44, 450
StyD4I	CCNGG	1 cut(s)	61
StyI	CCWWGG	1 cut(s)	83
TaaI	ACNGT	4 cut(s)	149, 285, 437, 473
TaqI	TCGA	5 cut(s)	114, 227, 351, 463, 467
TasI	AATT	2 cut(s)	52, 66
TatI	WGTACW	2 cut(s)	280, 437
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	2 cut(s)	69, 98
Tru9I	TTAA	2 cut(s)	69, 98
TspGWI	ACGGA	2 cut(s)	89, 261
VpaK11BI	GGWCC	3 cut(s)	47, 176, 322
XcmI	CCANNNNNNNNNTGG	1 cut(s)	90
XhoI	CTCGAG	1 cut(s)	350
XmnI	GAANNNNTTC	1 cut(s)	457
XspI	CTAG	2 cut(s)	44, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.