Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8022450.1

Orthogroup ID

OG0002688

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 519

Gene Structure 518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8022450.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 518 bp

atgatcgacgttggcaacgagcttgagattccttgttatatgtatttcgcttctccggcgacgtttctgagcttcatgtttcatattccggtcttggacgccgaaatttcaaccgactttggcgacttggatactgagttgactataccgggttttgctaactcggtgcctccactggtcttgccgacggcgctgttgagtaagaagggggatacgtacccttcctatttatcccatacggcaaggtacaaggaacccaagggtattgttgtcaatacgttcaaggaattggagccacacgcgcttagctcgctggctgcgagtgatgtgccgcgagttcacgctattgggccgattcttgatcttaatgggccgggccaatggcaggatccggaccggtacgagagcgtggtgaagtggcttgatgaccagcctccatcgtctgtggtgctgttgtgctttgggagcatggggagtcttagtgggcctcaggtgagggagatagcatttgggctgga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

172

Amino Acids

18.77

Weight (kDa)

4.53

Isoelectric Point (pI)

34.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02620 FvH4_2g02630 FvH4_3g12970 FvH4_3g12970 FvH4_3g17180 FvH4_3g17181
malus_domestica	MD05G1246700.v1.1
prunus_persica	Prupe.4G117900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0153371 RchiOBHm_Chr5g0021081 RchiOBHm_Chr5g0021091 RchiOBHm_Chr5g0021101
rosa_laevigata	RLG00000032582 RLG00000032583 RLG00000032584 RLG00000032587
rosa_multiflora	Rmu_co7967648.1_g000001 Rmu_co8022450.1_g000001 Rmu_co8209284.1_g000001 Rmu_co8295101.1_g000001 Rmu_sc0002467.1_g000005 Rmu_sc0041861.1_g000001 Rmu_ssc0000244.1_g000020 Rmu_ssc0000244.1_g000027 Rmu_ssc0000244.1_g000028
rosa_roxburghii	Rroxscaffold_1G00057340 Rroxscaffold_1G00057380
rosa_rugosa	Rorug05G0064300 Rorug05G0064400 Rorug05G0064500 Rorug05G0064700
rosa_samantha	Rh2AG501400 Rh5CG166400 Rh5CG166500 Rh5CG166600 Rh5DG153100 Rh5DG153300 Rh5DG153400
rosa_wichuraiana	Rw5G013670 Rw5G013680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	166
AccII	CGCG	2 cut(s)	302, 334
AccIII	TCCGGA	1 cut(s)	391
AciI	CCGC	1 cut(s)	332
AclWI	GGATC	2 cut(s)	383, 396
AcsI	RAATTY	1 cut(s)	105
AcyI	GRCGYC	1 cut(s)	99
AfaI	GTAC	3 cut(s)	218, 248, 401
AfiI	CCNNNNNNNGG	1 cut(s)	385
AgeI	ACCGGT	1 cut(s)	396
AgsI	TTSAA	2 cut(s)	111, 283
AluBI	AGCT	3 cut(s)	22, 72, 309
AluI	AGCT	3 cut(s)	22, 72, 309
AlwI	GGATC	2 cut(s)	383, 396
Aor13HI	TCCGGA	1 cut(s)	391
AoxI	GGCC	4 cut(s)	350, 371, 376, 485
ApeKI	GCWGC	1 cut(s)	317
ApoI	RAATTY	1 cut(s)	105
AsiGI	ACCGGT	1 cut(s)	396
AspLEI	GCGC	2 cut(s)	193, 304
AspS9I	GGNCC	5 cut(s)	350, 371, 376, 394, 485
AsuC2I	CCSGG	2 cut(s)	150, 375
AsuHPI	GGTGA	2 cut(s)	424, 505
AvaII	GGWCC	1 cut(s)	394
AxyI	CCTNAGG	1 cut(s)	489
BamHI	GGATCC	1 cut(s)	388
BanI	GGYRCC	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	304
BccI	CCATC	1 cut(s)	445
BceAI	ACGGC	2 cut(s)	204, 255
BcgI	CGANNNNNNTGC	2 cut(s)	310, 344
BciVI	GTATCC	2 cut(s)	124, 205
BcnI	CCSGG	2 cut(s)	150, 375
BfoI	RGCGCY	1 cut(s)	194
BfuI	GTATCC	2 cut(s)	124, 205
BisI	GCNGC	2 cut(s)	318, 332
BlpI	GCTNAGC	1 cut(s)	305
BlsI	GCNGC	2 cut(s)	319, 333
Bme1390I	CCNGG	2 cut(s)	150, 375
Bme18I	GGWCC	1 cut(s)	394
BmgT120I	GGNCC	5 cut(s)	350, 371, 376, 394, 485
BmiI	GGNNCC	4 cut(s)	168, 255, 294, 390
BmrFI	CCNGG	2 cut(s)	150, 375
Bpu1102I	GCTNAGC	1 cut(s)	305
BpuEI	CTTGAG	1 cut(s)	44
BpuMI	CCSGG	2 cut(s)	150, 375
BsaAI	YACGTR	1 cut(s)	216
BsaHI	GRCGYC	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	258
BsaWI	WCCGGW	3 cut(s)	88, 391, 396
BsaXI	ACNNNNNCTCC	2 cut(s)	466, 496
Bsc4I	CCNNNNNNNGG	1 cut(s)	385
Bse118I	RCCGGY	1 cut(s)	396
Bse1I	ACTGG	1 cut(s)	180
Bse21I	CCTNAGG	1 cut(s)	489
BseAI	TCCGGA	1 cut(s)	391
BseDI	CCNNGG	1 cut(s)	258
BseLI	CCNNNNNNNGG	1 cut(s)	385
BseMII	CTCAG	3 cut(s)	59, 126, 503
BseNI	ACTGG	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	304
Bsh1236I	CGCG	2 cut(s)	302, 334
BshFI	GGCC	4 cut(s)	352, 373, 378, 487
BshNI	GGYRCC	1 cut(s)	166
BshTI	ACCGGT	1 cut(s)	396
BsiSI	CCGG	6 cut(s)	56, 89, 149, 374, 392, 397
BslI	CCNNNNNNNGG	1 cut(s)	385
BsnI	GGCC	4 cut(s)	352, 373, 378, 487
Bsp13I	TCCGGA	1 cut(s)	391
Bsp143I	GATC	3 cut(s)	3, 361, 388
Bsp1720I	GCTNAGC	1 cut(s)	305
BspACI	CCGC	1 cut(s)	332
BspANI	GGCC	4 cut(s)	352, 373, 378, 487
BspCNI	CTCAG	3 cut(s)	60, 127, 502
BspEI	TCCGGA	1 cut(s)	391
BspFNI	CGCG	2 cut(s)	302, 334
BspLI	GGNNCC	4 cut(s)	168, 255, 294, 390
BspPI	GGATC	2 cut(s)	383, 396
BspT107I	GGYRCC	1 cut(s)	166
BsrFI	RCCGGY	1 cut(s)	396
BsrI	ACTGG	1 cut(s)	180
BssAI	RCCGGY	1 cut(s)	396
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	3 cut(s)	3, 361, 388
BssNI	GRCGYC	1 cut(s)	99
BssT1I	CCWWGG	1 cut(s)	258
BstACI	GRCGYC	1 cut(s)	99
BstBAI	YACGTR	1 cut(s)	216
BstC8I	GCNNGC	2 cut(s)	311, 315
BstDEI	CTNAG	5 cut(s)	68, 135, 305, 479, 489
BstFNI	CGCG	2 cut(s)	302, 334
BstH2I	RGCGCY	1 cut(s)	194
BstHHI	GCGC	2 cut(s)	193, 304
BstKTI	GATC	3 cut(s)	6, 364, 391
BstMBI	GATC	3 cut(s)	3, 361, 388
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 190, 301, 310, 465
BstSCI	CCNGG	2 cut(s)	148, 373
BstSNI	TACGTA	1 cut(s)	216
BstUI	CGCG	2 cut(s)	302, 334
BstV1I	GCAGC	1 cut(s)	304
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
Bsu36I	CCTNAGG	1 cut(s)	489
BsuI	GTATCC	2 cut(s)	124, 205
BsuRI	GGCC	4 cut(s)	352, 373, 378, 487
BtsIMutI	CAGTG	1 cut(s)	173
Cac8I	GCNNGC	2 cut(s)	311, 315
CfoI	GCGC	2 cut(s)	193, 304
Cfr10I	RCCGGY	1 cut(s)	396
Cfr13I	GGNCC	5 cut(s)	350, 371, 376, 394, 485
CpoI	CGGWCCG	1 cut(s)	394
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	3 cut(s)	217, 247, 400
CspAI	ACCGGT	1 cut(s)	396
CspCI	CAANNNNNGTGG	2 cut(s)	162, 197
CspI	CGGWCCG	1 cut(s)	394
CviAII	CATG	2 cut(s)	76, 469
CviQI	GTAC	3 cut(s)	217, 247, 400
DdeI	CTNAG	5 cut(s)	68, 135, 305, 479, 489
DpnI	GATC	3 cut(s)	5, 363, 390
DpnII	GATC	3 cut(s)	3, 361, 388
Eco105I	TACGTA	1 cut(s)	216
Eco130I	CCWWGG	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	394
Eco81I	CCTNAGG	1 cut(s)	489
EcoT14I	CCWWGG	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	2 cut(s)	79, 472
FaiI	YATR	7 cut(s)	39, 41, 77, 84, 146, 237, 470
FatI	CATG	2 cut(s)	75, 468
Fnu4HI	GCNGC	2 cut(s)	318, 332
Fsp4HI	GCNGC	2 cut(s)	318, 332
GlaI	GCGC	2 cut(s)	192, 303
GluI	GCNGC	2 cut(s)	318, 332
HaeII	RGCGCY	1 cut(s)	194
HaeIII	GGCC	4 cut(s)	352, 373, 378, 487
HapII	CCGG	6 cut(s)	56, 89, 149, 374, 392, 397
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	2 cut(s)	193, 304
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	2 cut(s)	79, 472
Hin6I	GCGC	2 cut(s)	191, 302
HinP1I	GCGC	2 cut(s)	191, 302
HincII	GTYRAC	1 cut(s)	141
HindII	GTYRAC	1 cut(s)	141
HinfI	GANTC	3 cut(s)	28, 355, 475
HpaII	CCGG	6 cut(s)	56, 89, 149, 374, 392, 397
HphI	GGTGA	2 cut(s)	424, 505
Hpy166II	GTNNAC	2 cut(s)	141, 340
Hpy188I	TCNGA	1 cut(s)	69
Hpy188III	TCNNGA	2 cut(s)	359, 392
Hpy8I	GTNNAC	2 cut(s)	141, 340
Hpy99I	CGWCG	3 cut(s)	11, 64, 190
HpyAV	CCTTC	2 cut(s)	199, 231
HpyCH4IV	ACGT	4 cut(s)	9, 62, 215, 278
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 190, 301, 310, 465
HpyF3I	CTNAG	5 cut(s)	68, 135, 305, 479, 489
HpySE526I	ACGT	4 cut(s)	9, 62, 215, 278
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	2 cut(s)	79, 472
HspAI	GCGC	2 cut(s)	191, 302
Kpn2I	TCCGGA	1 cut(s)	391
Kzo9I	GATC	3 cut(s)	3, 361, 388
LmnI	GCTCC	2 cut(s)	292, 465
Lsp1109I	GCAGC	1 cut(s)	304
MaeII	ACGT	4 cut(s)	9, 62, 215, 278
MalI	GATC	3 cut(s)	5, 363, 390
MboI	GATC	3 cut(s)	3, 361, 388
MflI	RGATCY	1 cut(s)	388
MluCI	AATT	2 cut(s)	105, 287
MlyI	GAGTC	1 cut(s)	484
MnlI	CCTC	4 cut(s)	180, 444, 489, 498
MroI	TCCGGA	1 cut(s)	391
MseI	TTAA	1 cut(s)	366
MspI	CCGG	6 cut(s)	56, 89, 149, 374, 392, 397
MspR9I	CCNGG	2 cut(s)	150, 375
MvnI	CGCG	2 cut(s)	302, 334
MwoI	GCNNNNNNNGC	5 cut(s)	56, 190, 301, 310, 465
NciI	CCSGG	2 cut(s)	150, 375
NdeII	GATC	3 cut(s)	3, 361, 388
NlaIII	CATG	2 cut(s)	79, 472
NlaIV	GGNNCC	4 cut(s)	168, 255, 294, 390
PcsI	WCGNNNNNNNCGW	2 cut(s)	15, 317
PfeI	GAWTC	2 cut(s)	28, 355
PinAI	ACCGGT	1 cut(s)	396
PkrI	GCNGC	2 cut(s)	319, 333
PleI	GAGTC	1 cut(s)	483
PpsI	GAGTC	1 cut(s)	483
Ppu21I	YACGTR	1 cut(s)	216
PspN4I	GGNNCC	4 cut(s)	168, 255, 294, 390
PspPI	GGNCC	5 cut(s)	350, 371, 376, 394, 485
PsuI	RGATCY	1 cut(s)	388
RsaI	GTAC	3 cut(s)	218, 248, 401
RsaNI	GTAC	3 cut(s)	217, 247, 400
Rsr2I	CGGWCCG	1 cut(s)	394
RsrII	CGGWCCG	1 cut(s)	394
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	2 cut(s)	318, 332
Sau3AI	GATC	3 cut(s)	3, 361, 388
Sau96I	GGNCC	5 cut(s)	350, 371, 376, 394, 485
SchI	GAGTC	1 cut(s)	484
ScrFI	CCNGG	2 cut(s)	150, 375
SetI	ASST	9 cut(s)	12, 24, 65, 74, 218, 248, 281, 311, 495
SinI	GGWCC	1 cut(s)	394
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
SnaBI	TACGTA	1 cut(s)	216
Sse9I	AATT	2 cut(s)	105, 287
SsiI	CCGC	1 cut(s)	332
StyD4I	CCNGG	2 cut(s)	148, 373
StyI	CCWWGG	1 cut(s)	258
TaiI	ACGT	4 cut(s)	12, 65, 218, 281
TaqI	TCGA	1 cut(s)	6
TasI	AATT	2 cut(s)	105, 287
TauI	GCSGC	1 cut(s)	334
TfiI	GAWTC	2 cut(s)	28, 355
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TscAI	CASTG	1 cut(s)	180
TseI	GCWGC	1 cut(s)	317
TspDTI	ATGAA	2 cut(s)	64, 71
TspRI	CASTG	1 cut(s)	180
VpaK11BI	GGWCC	1 cut(s)	394
XapI	RAATTY	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.