Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002688

Physical Location & Seq

Genomic Coordinates Reverse (-)

16766029 .. 16767380

Gene Structure 1352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032584

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGTGATCATTCCCAGCACAGGTATCGGTCACTTGGTCCCCATGGTTGAGTTTGAGCGACGAATAACCAATCGCTATGGCCGATTTTCAGTGGTCATCCCCATCATCCCAGCACCCAGATCATTTCCGATCAATGGAAGCCCCACGTCAAGCAAGCAATCACTGATATATACCTTGCAAGCCGAGTCAGTCTCCAACTCAGTTCGAGTCCGACTAGCTGCGATGGTTATGGACGTACTTTGCACTGCGATGATCGATGTGGCTAAAGAACTAGAGGTTCCTCCTTACTTGTTTATGCTTCATTTGCCAACCCTAGACAAAGAAACAACCACGACTGAGTTTCGTGACTCTGGGACTGAGTTGGAGATAGCCAGTTTTGTTAACCGGATACCCAAGCAAGTGTTACCAATGGTGGTGCTCAAAAGAAAAGGAGAATGGTATTTTTGGTATAGAGAAACAAAGGGTATTACCGTGAATACGGTTGATGAACTTGAACCACATGCACCAGTCATTGATGTCACTGGAGCGGATGACTGCATGGGAAGTCTTACCGGACCTCAAGTGAGAGAGGTTGCAATTGGGCTTGAACAAGCCAAGTTTCGTTTCTTGTGGTCCTTGCCTGAGCCGCCCAAGACATTAGGCCTTTCAAGCAAGTACATGGATCTGGAGAAAGCGGTTGATGGCCTTAGAACGAAGTGTTGGGATGGGCTTGGTGTGTGGGTGGATCCTCCAAGCGACGGTGTTGGTGCACAAAGCGATCGGATGGTTCATATCACATTGCGGTTGGAACTCAATTTTGGAGAGTGTATGGTACGGCGTACCAATTGCTACATGGCCTATATATGCCGAGCAACAAATGAATGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

290

Amino Acids

32.43

Weight (kDa)

5.9

Isoelectric Point (pI)

42.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02620 FvH4_2g02630 FvH4_3g12970 FvH4_3g12970 FvH4_3g17180 FvH4_3g17181
malus_domestica	MD05G1246700.v1.1
prunus_persica	Prupe.4G117900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0153371 RchiOBHm_Chr5g0021081 RchiOBHm_Chr5g0021091 RchiOBHm_Chr5g0021101
rosa_laevigata	RLG00000032582 RLG00000032583 RLG00000032584 RLG00000032587
rosa_multiflora	Rmu_co7967648.1_g000001 Rmu_co8022450.1_g000001 Rmu_co8209284.1_g000001 Rmu_co8295101.1_g000001 Rmu_sc0002467.1_g000005 Rmu_sc0041861.1_g000001 Rmu_ssc0000244.1_g000020 Rmu_ssc0000244.1_g000027 Rmu_ssc0000244.1_g000028
rosa_roxburghii	Rroxscaffold_1G00057340 Rroxscaffold_1G00057380
rosa_rugosa	Rorug05G0064300 Rorug05G0064400 Rorug05G0064500 Rorug05G0064700
rosa_samantha	Rh2AG501400 Rh5CG166400 Rh5CG166500 Rh5CG166600 Rh5DG153100 Rh5DG153300 Rh5DG153400
rosa_wichuraiana	Rw5G013670 Rw5G013680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	527
AciI	CCGC	4 cut(s)	527, 626, 674, 781
AclWI	GGATC	3 cut(s)	669, 719, 732
AcoI	YGGCCR	1 cut(s)	79
AfaI	GTAC	4 cut(s)	237, 656, 813, 820
AfiI	CCNNNNNNNGG	3 cut(s)	20, 134, 737
AgsI	TTSAA	3 cut(s)	494, 587, 648
AjiI	CACGTC	1 cut(s)	147
AjuI	GAANNNNNNNTTGG	6 cut(s)	587, 619, 682, 714, 780, 812
AluBI	AGCT	1 cut(s)	218
AluI	AGCT	1 cut(s)	218
Alw21I	GWGCWC	2 cut(s)	420, 751
Alw26I	GTCTC	1 cut(s)	196
Alw44I	GTGCAC	1 cut(s)	747
AlwI	GGATC	3 cut(s)	669, 719, 732
AoxI	GGCC	4 cut(s)	79, 640, 682, 834
ApaLI	GTGCAC	1 cut(s)	747
ApeKI	GCWGC	1 cut(s)	218
AspS9I	GGNCC	3 cut(s)	37, 554, 612
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	3 cut(s)	37, 554, 612
BaeGI	GKGCMC	1 cut(s)	751
BamHI	GGATCC	1 cut(s)	724
Bbv12I	GWGCWC	2 cut(s)	420, 751
BbvI	GCAGC	1 cut(s)	205
BccI	CCATC	5 cut(s)	110, 217, 674, 698, 757
BceAI	ACGGC	1 cut(s)	830
BcgI	CGANNNNNNTGC	2 cut(s)	7, 41
BciVI	GTATCC	1 cut(s)	381
BclI	TGATCA	1 cut(s)	6
BcoDI	GTCTC	1 cut(s)	196
BfaI	CTAG	3 cut(s)	215, 272, 314
BfuI	GTATCC	1 cut(s)	381
BisI	GCNGC	2 cut(s)	219, 626
BlsI	GCNGC	2 cut(s)	220, 627
Bme18I	GGWCC	3 cut(s)	37, 554, 612
BmgBI	CACGTC	1 cut(s)	147
BmgT120I	GGNCC	3 cut(s)	37, 554, 612
BmiI	GGNNCC	3 cut(s)	39, 279, 726
BplI	GAGNNNNNCTC	2 cut(s)	176, 208
BpmI	CTGGAG	2 cut(s)	543, 686
Bpu10I	CCTNAGC	1 cut(s)	621
BpuEI	CTTGAG	1 cut(s)	543
Bsa29I	ATCGAT	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	42
BsaWI	WCCGGW	2 cut(s)	384, 551
Bsc4I	CCNNNNNNNGG	3 cut(s)	20, 134, 737
Bse1I	ACTGG	3 cut(s)	372, 506, 526
Bse3DI	GCAATG	1 cut(s)	776
BseCI	ATCGAT	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	42
BseGI	GGATG	5 cut(s)	96, 105, 535, 709, 768
BseLI	CCNNNNNNNGG	3 cut(s)	20, 134, 737
BseMI	GCAATG	1 cut(s)	776
BseMII	CTCAG	4 cut(s)	213, 327, 348, 612
BseNI	ACTGG	3 cut(s)	372, 506, 526
BseSI	GKGCMC	1 cut(s)	751
BseXI	GCAGC	1 cut(s)	205
BseYI	CCCAGC	2 cut(s)	14, 109
Bsh1285I	CGRYCG	1 cut(s)	760
BshFI	GGCC	4 cut(s)	81, 642, 684, 836
BshVI	ATCGAT	1 cut(s)	255
BsiEI	CGRYCG	1 cut(s)	760
BsiHKAI	GWGCWC	2 cut(s)	420, 751
BsiSI	CCGG	2 cut(s)	385, 552
BslFI	GGGAC	2 cut(s)	23, 367
BslI	CCNNNNNNNGG	3 cut(s)	20, 134, 737
BsmAI	GTCTC	1 cut(s)	196
BsmFI	GGGAC	2 cut(s)	23, 367
BsmI	GAATGC	1 cut(s)	866
BsnI	GGCC	4 cut(s)	81, 642, 684, 836
Bsp1286I	GDGCHC	2 cut(s)	420, 751
Bsp143I	GATC	7 cut(s)	6, 119, 129, 252, 661, 724, 757
Bsp19I	CCATGG	1 cut(s)	42
BspACI	CCGC	4 cut(s)	527, 626, 674, 781
BspANI	GGCC	4 cut(s)	81, 642, 684, 836
BspCNI	CTCAG	4 cut(s)	212, 328, 349, 613
BspDI	ATCGAT	1 cut(s)	255
BspLI	GGNNCC	3 cut(s)	39, 279, 726
BspPI	GGATC	3 cut(s)	669, 719, 732
BsrBI	CCGCTC	1 cut(s)	527
BsrDI	GCAATG	1 cut(s)	776
BsrI	ACTGG	3 cut(s)	372, 506, 526
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	7 cut(s)	6, 119, 129, 252, 661, 724, 757
BssT1I	CCWWGG	1 cut(s)	42
Bst4CI	ACNGT	3 cut(s)	472, 481, 740
BstC8I	GCNNGC	2 cut(s)	155, 180
BstDEI	CTNAG	5 cut(s)	199, 336, 357, 621, 686
BstDSI	CCRYGG	1 cut(s)	42
BstF5I	GGATG	5 cut(s)	96, 105, 535, 709, 768
BstKTI	GATC	7 cut(s)	9, 122, 132, 255, 664, 727, 760
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	7 cut(s)	6, 119, 129, 252, 661, 724, 757
BstMCI	CGRYCG	1 cut(s)	760
BstMWI	GCNNNNNNNGC	3 cut(s)	304, 625, 648
BstNSI	RCATGY	1 cut(s)	503
BstSLI	GKGCMC	1 cut(s)	751
BstV1I	GCAGC	1 cut(s)	205
BstX2I	RGATCY	2 cut(s)	661, 724
BstYI	RGATCY	2 cut(s)	661, 724
Bsu15I	ATCGAT	1 cut(s)	255
BsuI	GTATCC	1 cut(s)	381
BsuRI	GGCC	4 cut(s)	81, 642, 684, 836
BsuTUI	ATCGAT	1 cut(s)	255
BtgI	CCRYGG	1 cut(s)	42
BtgZI	GCGATG	2 cut(s)	236, 263
BtrI	CACGTC	1 cut(s)	147
BtsCI	GGATG	5 cut(s)	96, 105, 535, 709, 768
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	4 cut(s)	96, 161, 243, 519
Cac8I	GCNNGC	2 cut(s)	155, 180
Cfr13I	GGNCC	3 cut(s)	37, 554, 612
ClaI	ATCGAT	1 cut(s)	255
Csp6I	GTAC	4 cut(s)	236, 655, 812, 819
CviAII	CATG	5 cut(s)	43, 500, 538, 658, 832
CviQI	GTAC	4 cut(s)	236, 655, 812, 819
DdeI	CTNAG	5 cut(s)	199, 336, 357, 621, 686
DpnI	GATC	7 cut(s)	8, 121, 131, 254, 663, 726, 759
DpnII	GATC	7 cut(s)	6, 119, 129, 252, 661, 724, 757
EaeI	YGGCCR	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	42
Eco147I	AGGCCT	1 cut(s)	642
Eco47I	GGWCC	3 cut(s)	37, 554, 612
EcoT14I	CCWWGG	1 cut(s)	42
EcoT22I	ATGCAT	1 cut(s)	866
ErhI	CCWWGG	1 cut(s)	42
FaeI	CATG	5 cut(s)	46, 503, 541, 661, 835
FaqI	GGGAC	2 cut(s)	23, 367
FatI	CATG	5 cut(s)	42, 499, 537, 657, 831
FbaI	TGATCA	1 cut(s)	6
Fnu4HI	GCNGC	2 cut(s)	219, 626
FokI	GGATG	5 cut(s)	83, 92, 542, 716, 775
Fsp4HI	GCNGC	2 cut(s)	219, 626
FspBI	CTAG	3 cut(s)	215, 272, 314
GluI	GCNGC	2 cut(s)	219, 626
GsaI	CCCAGC	2 cut(s)	18, 113
GsuI	CTGGAG	2 cut(s)	543, 686
HaeIII	GGCC	4 cut(s)	81, 642, 684, 836
HapII	CCGG	2 cut(s)	385, 552
Hin1II	CATG	5 cut(s)	46, 503, 541, 661, 835
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HinfI	GANTC	3 cut(s)	185, 207, 347
HpaI	GTTAAC	1 cut(s)	382
HpaII	CCGG	2 cut(s)	385, 552
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	382, 749
Hpy188I	TCNGA	3 cut(s)	129, 212, 762
Hpy188III	TCNNGA	2 cut(s)	344, 665
Hpy8I	GTNNAC	2 cut(s)	382, 749
Hpy99I	CGWCG	2 cut(s)	63, 740
HpyCH4III	ACNGT	3 cut(s)	472, 481, 740
HpyCH4IV	ACGT	2 cut(s)	146, 234
HpyCH4V	TGCA	7 cut(s)	178, 243, 503, 537, 575, 749, 864
HpyF10VI	GCNNNNNNNGC	3 cut(s)	304, 625, 648
HpyF3I	CTNAG	5 cut(s)	199, 336, 357, 621, 686
HpySE526I	ACGT	2 cut(s)	146, 234
Hsp92II	CATG	5 cut(s)	46, 503, 541, 661, 835
Ksp22I	TGATCA	1 cut(s)	6
KspAI	GTTAAC	1 cut(s)	382
Kzo9I	GATC	7 cut(s)	6, 119, 129, 252, 661, 724, 757
LmnI	GCTCC	1 cut(s)	524
Lsp1109I	GCAGC	1 cut(s)	205
MaeI	CTAG	3 cut(s)	215, 272, 314
MaeII	ACGT	2 cut(s)	146, 234
MaeIII	GTNAC	4 cut(s)	29, 344, 402, 517
MalI	GATC	7 cut(s)	8, 121, 131, 254, 663, 726, 759
MbiI	CCGCTC	1 cut(s)	527
MboI	GATC	7 cut(s)	6, 119, 129, 252, 661, 724, 757
MfeI	CAATTG	2 cut(s)	576, 823
MflI	RGATCY	2 cut(s)	661, 724
MhlI	GDGCHC	2 cut(s)	420, 751
MluCI	AATT	3 cut(s)	576, 793, 823
MlyI	GAGTC	3 cut(s)	194, 216, 341
MmeI	TCCRAC	4 cut(s)	219, 235, 342, 765
MnlI	CCTC	5 cut(s)	268, 291, 562, 567, 738
Mph1103I	ATGCAT	1 cut(s)	866
MseI	TTAA	1 cut(s)	381
MslI	CAYNNNNRTG	1 cut(s)	248
MspI	CCGG	2 cut(s)	385, 552
MunI	CAATTG	2 cut(s)	576, 823
Mva1269I	GAATGC	1 cut(s)	866
MwoI	GCNNNNNNNGC	3 cut(s)	304, 625, 648
NcoI	CCATGG	1 cut(s)	42
NdeII	GATC	7 cut(s)	6, 119, 129, 252, 661, 724, 757
NlaIII	CATG	5 cut(s)	46, 503, 541, 661, 835
NlaIV	GGNNCC	3 cut(s)	39, 279, 726
NmeAIII	GCCGAG	1 cut(s)	208
NmuCI	GTSAC	3 cut(s)	29, 344, 517
NsiI	ATGCAT	1 cut(s)	866
NspI	RCATGY	1 cut(s)	503
PceI	AGGCCT	1 cut(s)	642
PcsI	WCGNNNNNNNCGW	1 cut(s)	79
PctI	GAATGC	1 cut(s)	866
PkrI	GCNGC	2 cut(s)	220, 627
Ple19I	CGATCG	1 cut(s)	760
PleI	GAGTC	3 cut(s)	193, 215, 341
PpsI	GAGTC	3 cut(s)	193, 215, 341
PspFI	CCCAGC	2 cut(s)	14, 109
PspN4I	GGNNCC	3 cut(s)	39, 279, 726
PspPI	GGNCC	3 cut(s)	37, 554, 612
PsuI	RGATCY	2 cut(s)	661, 724
PvuI	CGATCG	1 cut(s)	760
RsaI	GTAC	4 cut(s)	237, 656, 813, 820
RsaNI	GTAC	4 cut(s)	236, 655, 812, 819
RseI	CAYNNNNRTG	1 cut(s)	248
SaqAI	TTAA	1 cut(s)	381
SatI	GCNGC	2 cut(s)	219, 626
Sau3AI	GATC	7 cut(s)	6, 119, 129, 252, 661, 724, 757
Sau96I	GGNCC	3 cut(s)	37, 554, 612
SchI	GAGTC	3 cut(s)	194, 216, 341
SduI	GDGCHC	2 cut(s)	420, 751
SetI	ASST	8 cut(s)	25, 149, 176, 220, 237, 279, 559, 573
SinI	GGWCC	3 cut(s)	37, 554, 612
SmiMI	CAYNNNNRTG	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	558
SmoI	CTYRAG	1 cut(s)	558
Sse9I	AATT	3 cut(s)	576, 793, 823
SseBI	AGGCCT	1 cut(s)	642
SsiI	CCGC	4 cut(s)	527, 626, 674, 781
SspMI	CTAG	3 cut(s)	215, 272, 314
StuI	AGGCCT	1 cut(s)	642
StyI	CCWWGG	1 cut(s)	42
TaaI	ACNGT	3 cut(s)	472, 481, 740
TaiI	ACGT	2 cut(s)	149, 237
TaqI	TCGA	2 cut(s)	205, 255
TaqII	GACCGA	1 cut(s)	17
TasI	AATT	3 cut(s)	576, 793, 823
TatI	WGTACW	1 cut(s)	654
TauI	GCSGC	1 cut(s)	628
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TscAI	CASTG	4 cut(s)	96, 168, 250, 526
TseFI	GTSAC	3 cut(s)	29, 344, 517
TseI	GCWGC	1 cut(s)	218
Tsp45I	GTSAC	3 cut(s)	29, 344, 517
TspDTI	ATGAA	3 cut(s)	290, 501, 758
TspRI	CASTG	4 cut(s)	96, 168, 250, 526
VneI	GTGCAC	1 cut(s)	747
VpaK11BI	GGWCC	3 cut(s)	37, 554, 612
XceI	RCATGY	1 cut(s)	503
XcmI	CCANNNNNNNNNTGG	1 cut(s)	829
XspI	CTAG	3 cut(s)	215, 272, 314
Zsp2I	ATGCAT	1 cut(s)	866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.