Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000244.1

Orthogroup ID

OG0002688

Physical Location & Seq

Genomic Coordinates Reverse (-)

151617 .. 157466

Gene Structure 5850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000244.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

atgaatacggatgacgaacttgaaccacatgcacttaatattgttactgatggtcgaggtccgccggtttatccggtcggaccagtcattgctgtcactggaccggatgactggtattcagagaaggttagtcgtgataccatcatgaaatgggtagataatcaaccttcatcttctgtggtatttctgtgctttggaagcatgggaagtcttaccggacctcaagtgagagaggtcgcaattgggcttgagcgggccaaggttcgtttcgtgtggtccttgcgtgagccgcccaaggcatattgggccttccgagcaagtacatggatctggagaaagtgtgttagcgcacgaagcgatcggagggttcatatcacattgcggttagaactcaattttggagagcgtatggtacggccgtacggcgtaccagttgctacatggcctatatacgccgaccaacaaatgagagcatttgagatggtgaaagaattaaaattaccgacccggaaagttgtggtgttagaggtcagaagacataagatgagacggagaagagtaacagagagtggtgaaggagctgtgcgtggttgccttaaactaggcttttattggacttccaaatcaaaactgaccattggatgtaaggtgatcgacatatcaatggttgttattcgattgtactactggtatgaattttataccaactttctggctggtcaagctgtgttgaagaaacaaacaaggaacagaactcacctataccaggatctcaatgatgatcttcttgggtttaatcgctgccatggtttcagcctcctactcagtgctgaaattggggatcttggattagagatgataggcacagagtcacagacccatacaaaattcaatggggatcttggattagagatgataggcacagagtcacagacccatacaaaattcaatggggatcttggattagagatgataggcacagagtcacagacccatacaaaattcaatggggatcttggattagagatgataggcacagagtcacagacccatacaaaattcaatggggatcttggattagagatgataggcacagagtcacagacccatacaaaattcaatggggatcttggattagagatgataggcacagagtcacagacccatacaaaattcaatggggatcttggattagagatgataggcacagactactgccagaaactagatcgctgtcgcagtaaagaacccctgcagccaaacgcaaacccacatatccgcgtcgccgccgtgcctactgtctcacaccgcccacacctagagctcgttgatgcctggtcaggggaacgagggttcaccgcctccaagaaaacgaaaccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

460

Amino Acids

52.02

Weight (kDa)

8.54

Isoelectric Point (pI)

31.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02620 FvH4_2g02630 FvH4_3g12970 FvH4_3g12970 FvH4_3g17180 FvH4_3g17181
malus_domestica	MD05G1246700.v1.1
prunus_persica	Prupe.4G117900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0153371 RchiOBHm_Chr5g0021081 RchiOBHm_Chr5g0021091 RchiOBHm_Chr5g0021101
rosa_laevigata	RLG00000032582 RLG00000032583 RLG00000032584 RLG00000032587
rosa_multiflora	Rmu_co7967648.1_g000001 Rmu_co8022450.1_g000001 Rmu_co8209284.1_g000001 Rmu_co8295101.1_g000001 Rmu_sc0002467.1_g000005 Rmu_sc0041861.1_g000001 Rmu_ssc0000244.1_g000020 Rmu_ssc0000244.1_g000027 Rmu_ssc0000244.1_g000028
rosa_roxburghii	Rroxscaffold_1G00057340 Rroxscaffold_1G00057380
rosa_rugosa	Rorug05G0064300 Rorug05G0064400 Rorug05G0064500 Rorug05G0064700
rosa_samantha	Rh2AG501400 Rh5CG166400 Rh5CG166500 Rh5CG166600 Rh5DG153100 Rh5DG153300 Rh5DG153400
rosa_wichuraiana	Rw5G013670 Rw5G013680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	253
AccII	CGCG	1 cut(s)	1281
AciI	CCGC	8 cut(s)	62, 253, 290, 382, 1279, 1287, 1309, 1359
AclWI	GGATC	9 cut(s)	335, 777, 849, 906, 963, 1020, 1077, 1134, 1191
AcoI	YGGCCR	1 cut(s)	416
AcsI	RAATTY	7 cut(s)	695, 887, 944, 1001, 1058, 1115, 1172
AfaI	GTAC	5 cut(s)	322, 414, 422, 429, 683
AfiI	CCNNNNNNNGG	2 cut(s)	766, 1341
AgsI	TTSAA	8 cut(s)	23, 733, 892, 949, 1006, 1063, 1120, 1177
AjnI	CCWGG	2 cut(s)	765, 1334
AjuI	GAANNNNNNNTTGG	4 cut(s)	251, 283, 381, 413
AloI	GAACNNNNNNTCC	2 cut(s)	1337, 1369
AluBI	AGCT	3 cut(s)	581, 725, 1324
AluI	AGCT	3 cut(s)	581, 725, 1324
Alw21I	GWGCWC	1 cut(s)	1326
Alw26I	GTCTC	2 cut(s)	541, 1306
AlwI	GGATC	9 cut(s)	335, 777, 849, 906, 963, 1020, 1077, 1134, 1191
AoxI	GGCC	4 cut(s)	255, 306, 416, 443
ApeKI	GCWGC	2 cut(s)	801, 1255
ApoI	RAATTY	7 cut(s)	695, 887, 944, 1001, 1058, 1115, 1172
AspLEI	GCGC	1 cut(s)	350
AspS9I	GGNCC	7 cut(s)	59, 80, 101, 218, 255, 276, 306
AsuC2I	CCSGG	1 cut(s)	508
AsuHPI	GGTGA	5 cut(s)	496, 584, 661, 749, 1348
AvaII	GGWCC	5 cut(s)	59, 80, 101, 218, 276
BaeI	ACNNNNGTAYC	2 cut(s)	404, 437
BanII	GRGCYC	1 cut(s)	1326
BbsI	GAAGAC	1 cut(s)	541
Bbv12I	GWGCWC	1 cut(s)	1326
BbvI	GCAGC	2 cut(s)	788, 1267
BccI	CCATC	3 cut(s)	44, 149, 475
BceAI	ACGGC	4 cut(s)	403, 431, 439, 1274
BciT130I	CCWGG	2 cut(s)	767, 1336
BcnI	CCSGG	1 cut(s)	508
BcoDI	GTCTC	2 cut(s)	541, 1306
BfaI	CTAG	4 cut(s)	602, 1226, 1319, 1381
BfmI	CTRYAG	1 cut(s)	1253
BisI	GCNGC	4 cut(s)	290, 802, 1256, 1287
BlsI	GCNGC	4 cut(s)	291, 803, 1257, 1288
Bme1390I	CCNGG	3 cut(s)	508, 767, 1336
Bme18I	GGWCC	5 cut(s)	59, 80, 101, 218, 276
BmgT120I	GGNCC	7 cut(s)	59, 80, 101, 218, 255, 276, 306
BmrFI	CCNGG	3 cut(s)	508, 767, 1336
BmsI	GCATC	1 cut(s)	1321
BpiI	GAAGAC	1 cut(s)	541
BpmI	CTGGAG	1 cut(s)	352
BpuEI	CTTGAG	2 cut(s)	207, 269
BpuMI	CCSGG	1 cut(s)	508
BsaJI	CCNNGG	3 cut(s)	258, 294, 805
BsaWI	WCCGGW	3 cut(s)	73, 103, 215
BsaXI	ACNNNNNCTCC	2 cut(s)	325, 355
Bsc4I	CCNNNNNNNGG	2 cut(s)	766, 1341
Bse118I	RCCGGY	1 cut(s)	64
Bse1I	ACTGG	5 cut(s)	83, 103, 116, 431, 692
Bse3DI	GCAATG	2 cut(s)	87, 377
BseBI	CCWGG	2 cut(s)	767, 1336
BseDI	CCNNGG	3 cut(s)	258, 294, 805
BseGI	GGATG	3 cut(s)	16, 112, 647
BseLI	CCNNNNNNNGG	2 cut(s)	766, 1341
BseMI	GCAATG	2 cut(s)	87, 377
BseMII	CTCAG	1 cut(s)	838
BseNI	ACTGG	5 cut(s)	83, 103, 116, 431, 692
BseX3I	CGGCCG	1 cut(s)	416
BseXI	GCAGC	2 cut(s)	788, 1267
Bsh1236I	CGCG	1 cut(s)	1281
Bsh1285I	CGRYCG	3 cut(s)	78, 361, 419
BshFI	GGCC	4 cut(s)	257, 308, 418, 445
BsiEI	CGRYCG	3 cut(s)	78, 361, 419
BsiHKAI	GWGCWC	1 cut(s)	1326
BsiSI	CCGG	5 cut(s)	65, 74, 104, 216, 508
BsiWI	CGTACG	1 cut(s)	420
BslI	CCNNNNNNNGG	2 cut(s)	766, 1341
BsmAI	GTCTC	2 cut(s)	541, 1306
BsmBI	CGTCTC	1 cut(s)	541
BsnI	GGCC	4 cut(s)	257, 308, 418, 445
Bsp1286I	GDGCHC	1 cut(s)	1326
Bsp19I	CCATGG	1 cut(s)	805
BspACI	CCGC	8 cut(s)	62, 253, 290, 382, 1279, 1287, 1309, 1359
BspANI	GGCC	4 cut(s)	257, 308, 418, 445
BspCNI	CTCAG	1 cut(s)	837
BspFNI	CGCG	1 cut(s)	1281
BspHI	TCATGA	1 cut(s)	144
BspMAI	CTGCAG	1 cut(s)	1257
BspPI	GGATC	9 cut(s)	335, 777, 849, 906, 963, 1020, 1077, 1134, 1191
BsrBI	CCGCTC	1 cut(s)	253
BsrDI	GCAATG	2 cut(s)	87, 377
BsrFI	RCCGGY	1 cut(s)	64
BsrI	ACTGG	5 cut(s)	83, 103, 116, 431, 692
BssAI	RCCGGY	1 cut(s)	64
BssECI	CCNNGG	3 cut(s)	258, 294, 805
BssT1I	CCWWGG	3 cut(s)	258, 294, 805
Bst2UI	CCWGG	2 cut(s)	767, 1336
Bst4CI	ACNGT	1 cut(s)	1300
Bst6I	CTCTTC	1 cut(s)	550
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	1 cut(s)	824
BstDSI	CCRYGG	1 cut(s)	805
BstENI	CCTNNNNNAGG	1 cut(s)	764
BstF5I	GGATG	3 cut(s)	16, 112, 647
BstFNI	CGCG	1 cut(s)	1281
BstHHI	GCGC	1 cut(s)	350
BstMAI	GTCTC	2 cut(s)	541, 1306
BstMCI	CGRYCG	3 cut(s)	78, 361, 419
BstMWI	GCNNNNNNNGC	6 cut(s)	198, 289, 305, 314, 354, 722
BstNI	CCWGG	2 cut(s)	767, 1336
BstNSI	RCATGY	1 cut(s)	32
BstSCI	CCNGG	3 cut(s)	506, 765, 1334
BstSFI	CTRYAG	1 cut(s)	1253
BstUI	CGCG	1 cut(s)	1281
BstV1I	GCAGC	2 cut(s)	788, 1267
BstV2I	GAAGAC	1 cut(s)	541
BstX2I	RGATCY	9 cut(s)	327, 769, 841, 898, 955, 1012, 1069, 1126, 1183
BstXI	CCANNNNNNTGG	1 cut(s)	712
BstYI	RGATCY	9 cut(s)	327, 769, 841, 898, 955, 1012, 1069, 1126, 1183
BstZI	CGGCCG	1 cut(s)	416
BsuRI	GGCC	4 cut(s)	257, 308, 418, 445
BtgI	CCRYGG	1 cut(s)	805
BtsCI	GGATG	3 cut(s)	16, 112, 647
BtsIMutI	CAGTG	2 cut(s)	96, 832
Cac8I	GCNNGC	1 cut(s)	255
CciI	TCATGA	1 cut(s)	144
CfoI	GCGC	1 cut(s)	350
Cfr10I	RCCGGY	1 cut(s)	64
Cfr13I	GGNCC	7 cut(s)	59, 80, 101, 218, 255, 276, 306
CseI	GACGC	1 cut(s)	1270
Csp6I	GTAC	5 cut(s)	321, 413, 421, 428, 682
CviAII	CATG	6 cut(s)	29, 145, 202, 324, 441, 806
CviQI	GTAC	5 cut(s)	321, 413, 421, 428, 682
DdeI	CTNAG	1 cut(s)	824
EaeI	YGGCCR	1 cut(s)	416
EagI	CGGCCG	1 cut(s)	416
Eam1104I	CTCTTC	1 cut(s)	550
EarI	CTCTTC	1 cut(s)	550
EciI	GGCGGA	1 cut(s)	51
Ecl136II	GAGCTC	1 cut(s)	1324
EclXI	CGGCCG	1 cut(s)	416
Eco130I	CCWWGG	3 cut(s)	258, 294, 805
Eco24I	GRGCYC	1 cut(s)	1326
Eco47I	GGWCC	5 cut(s)	59, 80, 101, 218, 276
Eco52I	CGGCCG	1 cut(s)	416
Eco53kI	GAGCTC	1 cut(s)	1324
EcoICRI	GAGCTC	1 cut(s)	1324
EcoNI	CCTNNNNNAGG	1 cut(s)	764
EcoRII	CCWGG	2 cut(s)	765, 1334
EcoT14I	CCWWGG	3 cut(s)	258, 294, 805
EcoT38I	GRGCYC	1 cut(s)	1326
ErhI	CCWWGG	3 cut(s)	258, 294, 805
Esp3I	CGTCTC	1 cut(s)	541
FaeI	CATG	6 cut(s)	32, 148, 205, 327, 444, 809
FatI	CATG	6 cut(s)	28, 144, 201, 323, 440, 805
FauI	CCCGC	1 cut(s)	246
Fnu4HI	GCNGC	4 cut(s)	290, 802, 1256, 1287
FokI	GGATG	3 cut(s)	23, 119, 654
FriOI	GRGCYC	1 cut(s)	1326
Fsp4HI	GCNGC	4 cut(s)	290, 802, 1256, 1287
FspBI	CTAG	4 cut(s)	602, 1226, 1319, 1381
GlaI	GCGC	1 cut(s)	349
GluI	GCNGC	4 cut(s)	290, 802, 1256, 1287
GsuI	CTGGAG	1 cut(s)	352
HaeIII	GGCC	4 cut(s)	257, 308, 418, 445
HapII	CCGG	5 cut(s)	65, 74, 104, 216, 508
HgaI	GACGC	1 cut(s)	1270
HhaI	GCGC	1 cut(s)	350
Hin1II	CATG	6 cut(s)	32, 148, 205, 327, 444, 809
Hin6I	GCGC	1 cut(s)	348
HinP1I	GCGC	1 cut(s)	348
HinfI	GANTC	6 cut(s)	869, 926, 983, 1040, 1097, 1154
HpaII	CCGG	5 cut(s)	65, 74, 104, 216, 508
HphI	GGTGA	5 cut(s)	496, 584, 661, 749, 1348
Hpy166II	GTNNAC	1 cut(s)	1356
Hpy188I	TCNGA	5 cut(s)	80, 121, 314, 363, 533
Hpy188III	TCNNGA	3 cut(s)	134, 145, 331
Hpy8I	GTNNAC	1 cut(s)	1356
Hpy99I	CGWCG	1 cut(s)	1286
HpyAV	CCTTC	4 cut(s)	118, 177, 319, 569
HpyCH4III	ACNGT	1 cut(s)	1300
HpyCH4V	TGCA	2 cut(s)	32, 1255
HpyF10VI	GCNNNNNNNGC	6 cut(s)	198, 289, 305, 314, 354, 722
HpyF3I	CTNAG	1 cut(s)	824
Hsp92II	CATG	6 cut(s)	32, 148, 205, 327, 444, 809
HspAI	GCGC	1 cut(s)	348
LmnI	GCTCC	1 cut(s)	578
Lsp1109I	GCAGC	2 cut(s)	788, 1267
LweI	GCATC	1 cut(s)	1321
MaeI	CTAG	4 cut(s)	602, 1226, 1319, 1381
MaeIII	GTNAC	9 cut(s)	43, 94, 559, 870, 927, 984, 1041, 1098, 1155
MbiI	CCGCTC	1 cut(s)	253
MboII	GAAGA	5 cut(s)	165, 546, 567, 745, 776
MfeI	CAATTG	1 cut(s)	240
MflI	RGATCY	9 cut(s)	327, 769, 841, 898, 955, 1012, 1069, 1126, 1183
MhlI	GDGCHC	1 cut(s)	1326
MlyI	GAGTC	6 cut(s)	878, 935, 992, 1049, 1106, 1163
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	8 cut(s)	50, 226, 231, 357, 520, 827, 1343, 1372
MseI	TTAA	4 cut(s)	36, 494, 597, 795
MslI	CAYNNNNRTG	1 cut(s)	662
MspI	CCGG	5 cut(s)	65, 74, 104, 216, 508
MspR9I	CCNGG	3 cut(s)	508, 767, 1336
MunI	CAATTG	1 cut(s)	240
MvaI	CCWGG	2 cut(s)	767, 1336
MvnI	CGCG	1 cut(s)	1281
MwoI	GCNNNNNNNGC	6 cut(s)	198, 289, 305, 314, 354, 722
NciI	CCSGG	1 cut(s)	508
NcoI	CCATGG	1 cut(s)	805
NlaIII	CATG	6 cut(s)	32, 148, 205, 327, 444, 809
NmuCI	GTSAC	7 cut(s)	94, 870, 927, 984, 1041, 1098, 1155
NspI	RCATGY	1 cut(s)	32
PagI	TCATGA	1 cut(s)	144
Pfl23II	CGTACG	1 cut(s)	420
PkrI	GCNGC	4 cut(s)	291, 803, 1257, 1288
Ple19I	CGATCG	1 cut(s)	361
PleI	GAGTC	6 cut(s)	877, 934, 991, 1048, 1105, 1162
PpsI	GAGTC	6 cut(s)	877, 934, 991, 1048, 1105, 1162
Psp124BI	GAGCTC	1 cut(s)	1326
Psp6I	CCWGG	2 cut(s)	765, 1334
PspGI	CCWGG	2 cut(s)	765, 1334
PspLI	CGTACG	1 cut(s)	420
PspPI	GGNCC	7 cut(s)	59, 80, 101, 218, 255, 276, 306
PstI	CTGCAG	1 cut(s)	1257
PsuI	RGATCY	9 cut(s)	327, 769, 841, 898, 955, 1012, 1069, 1126, 1183
PvuI	CGATCG	1 cut(s)	361
RsaI	GTAC	5 cut(s)	322, 414, 422, 429, 683
RsaNI	GTAC	5 cut(s)	321, 413, 421, 428, 682
RseI	CAYNNNNRTG	1 cut(s)	662
SacI	GAGCTC	1 cut(s)	1326
SaqAI	TTAA	4 cut(s)	36, 494, 597, 795
SatI	GCNGC	4 cut(s)	290, 802, 1256, 1287
Sau96I	GGNCC	7 cut(s)	59, 80, 101, 218, 255, 276, 306
SchI	GAGTC	6 cut(s)	878, 935, 992, 1049, 1106, 1163
ScrFI	CCNGG	3 cut(s)	508, 767, 1336
SduI	GDGCHC	1 cut(s)	1326
SfaNI	GCATC	1 cut(s)	1321
SfcI	CTRYAG	1 cut(s)	1253
SinI	GGWCC	5 cut(s)	59, 80, 101, 218, 276
SmiMI	CAYNNNNRTG	1 cut(s)	662
SmlI	CTYRAG	2 cut(s)	222, 248
SmoI	CTYRAG	2 cut(s)	222, 248
SsiI	CCGC	8 cut(s)	62, 253, 290, 382, 1279, 1287, 1309, 1359
SspI	AATATT	1 cut(s)	40
SspMI	CTAG	4 cut(s)	602, 1226, 1319, 1381
SstI	GAGCTC	1 cut(s)	1326
StyD4I	CCNGG	3 cut(s)	506, 765, 1334
StyI	CCWWGG	3 cut(s)	258, 294, 805
TaaI	ACNGT	1 cut(s)	1300
TaqI	TCGA	3 cut(s)	55, 654, 676
TatI	WGTACW	2 cut(s)	320, 681
TauI	GCSGC	2 cut(s)	292, 1289
Tru1I	TTAA	4 cut(s)	36, 494, 597, 795
Tru9I	TTAA	4 cut(s)	36, 494, 597, 795
TscAI	CASTG	2 cut(s)	103, 832
TseFI	GTSAC	7 cut(s)	94, 870, 927, 984, 1041, 1098, 1155
TseI	GCWGC	2 cut(s)	801, 1255
Tsp45I	GTSAC	7 cut(s)	94, 870, 927, 984, 1041, 1098, 1155
TspDTI	ATGAA	5 cut(s)	17, 159, 161, 359, 708
TspGWI	ACGGA	2 cut(s)	23, 565
TspRI	CASTG	2 cut(s)	103, 832
VpaK11BI	GGWCC	5 cut(s)	59, 80, 101, 218, 276
XagI	CCTNNNNNAGG	1 cut(s)	764
XapI	RAATTY	7 cut(s)	695, 887, 944, 1001, 1058, 1115, 1172
XceI	RCATGY	1 cut(s)	32
XcmI	CCANNNNNNNNNTGG	1 cut(s)	438
XspI	CTAG	4 cut(s)	602, 1226, 1319, 1381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.