RchiOBHm_Chr5g0021101

UDP-glucose flavonoid 3-O-glucosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002688
Physical Location & Seq
Forward (+)
15354259 .. 15355359
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30117

Sequence Viewer

Length: 1101 bp
ATGTCCTCGGCCGAGTCAAACCGAGTTGCGTTTTTCGTGGACATGTTTTGTACGTCCATGATCGACGTTGCCAACGAGCTTGAGATTCCTTGTTATATGTATTTCGCTTCTCCGGCGACGTTTCTGAGCTTCATGTTTCATATTCAGGTCTTGGACGCCGAAATTTCAACCGACTTTGGCGACTTGGATACGGAGTTGACTATACCGGGTTTTGCTAACTCGGTGCCTCCACTGGTGTTGCCGACGGCGCTGTTGAGTAAGAAGGGGGATACGTACCCTTCCTATTTATCCCATACGGCAAGGTACAAGGAACCCAAGGGTATTGTTGTCAATACGTTCAAGGAACTGGAGCCACACGCGCTTAGCTCGCTGGCTGCGAGTGATGTGCCGCGAGTTCACGCTATTGGGCCGATTCTTGATCTTAATGGGCCCGGCCAATGGCAGGATCCCGACCGGTACGAGAGCGTGGTGAAGTGGCTTGATGACCAGCCTCCATCGTCTGTGGTGTTGTTGTGCTTTGGGAGCATGGGGAGTCTTAGTGGGCCTCAGGTGAGGGAGATAGCATTTGGGCTGGAAAGGGCTGGGTTTCGGTTCTTATGGGCATTGCGTGAACCGCCCAAGTCCGCTGTGTACCTCCCAAGCGACCCCGTAAACGTAGACGAGGTATTGCCACACGGGTTTTTAGAACGGACATGCAAATTGGGCTTAGTGTGCGGGTGGGTTCCGCAAGTGAAGATTCTGGCCCACCAAGCGATCGGAGGGTTCATATCGCATTGCGGGTGGAACTCTATTTTGGAGAGCTTGTGGTATGGGGTACCGATTGCCACTTGGCCGATTTACGCAGAACAACAAATGAACGCGTTTGAGATGGTGAAGGAATTGGGATTGGCAGTGGAGATTAGGCTGGACTATAGGGAGGGAAGTAATTTGGTGATGGCGGAGGAGGTGGAGAGAAGCATAAAGAGCTTGATGGACGGTGATCATGTGGTGAGGACTAGGGTGAAAGACATGAGAGAGAAGAGTAGGGGAGCATTGATGGAAAATGGGTCTGCATACAAAGCACTAGAAGGTTTAATTGAGGAGCTAATGCCCAAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

366

Amino Acids

40.69

Weight (kDa)

4.96

Isoelectric Point (pI)

36.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 167 - 302 8.1e-21 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 814
AccB1I GGYRCC 2 cut(s) 223, 814
AccI GTMKAC 1 cut(s) 657
AccII CGCG 3 cut(s) 359, 391, 860
AciI CCGC 7 cut(s) 389, 614, 624, 714, 725, 777, 938
AclWI GGATC 2 cut(s) 440, 453
AcoI YGGCCR 3 cut(s) 9, 433, 830
AcsI RAATTY 1 cut(s) 162
AcyI GRCGYC 1 cut(s) 156
AfaI GTAC 6 cut(s) 52, 275, 305, 458, 632, 816
AfiI CCNNNNNNNGG 2 cut(s) 438, 442
AflIII ACRYGT 2 cut(s) 42, 858
AgeI ACCGGT 1 cut(s) 453
AgsI TTSAA 2 cut(s) 168, 340
AjuI GAANNNNNNNTTGG 2 cut(s) 776, 808
AluBI AGCT 6 cut(s) 79, 129, 366, 801, 966, 1084
AluI AGCT 6 cut(s) 79, 129, 366, 801, 966, 1084
AlwI GGATC 2 cut(s) 440, 453
AoxI GGCC 7 cut(s) 9, 407, 428, 433, 542, 741, 830
ApaI GGGCCC 1 cut(s) 432
ApeKI GCWGC 1 cut(s) 374
ApoI RAATTY 1 cut(s) 162
AsiGI ACCGGT 1 cut(s) 453
Asp718I GGTACC 1 cut(s) 814
AspLEI GCGC 2 cut(s) 250, 361
AspS9I GGNCC 5 cut(s) 407, 428, 429, 542, 742
AsuC2I CCSGG 2 cut(s) 207, 432
AsuHPI GGTGA 7 cut(s) 481, 562, 883, 943, 989, 1000, 1012
AxyI CCTNAGG 1 cut(s) 546
BaeGI GKGCMC 1 cut(s) 432
BamHI GGATCC 1 cut(s) 445
BanI GGYRCC 2 cut(s) 223, 814
BanII GRGCYC 1 cut(s) 432
BbvI GCAGC 1 cut(s) 361
BccI CCATC 5 cut(s) 502, 862, 928, 964, 1030
BceAI ACGGC 2 cut(s) 261, 312
BcgI CGANNNNNNTGC 2 cut(s) 367, 401
BciVI GTATCC 2 cut(s) 181, 262
BclI TGATCA 1 cut(s) 979
BcnI CCSGG 2 cut(s) 207, 432
BfaI CTAG 2 cut(s) 996, 1064
BfmI CTRYAG 1 cut(s) 910
BfoI RGCGCY 1 cut(s) 251
BfuI GTATCC 2 cut(s) 181, 262
BisI GCNGC 2 cut(s) 375, 389
BlpI GCTNAGC 1 cut(s) 362
BlsI GCNGC 2 cut(s) 376, 390
Bme1390I CCNGG 2 cut(s) 207, 432
BmgT120I GGNCC 5 cut(s) 407, 428, 429, 542, 742
BmiI GGNNCC 7 cut(s) 225, 312, 351, 430, 447, 723, 816
BmrFI CCNGG 2 cut(s) 207, 432
BpmI CTGGAG 1 cut(s) 368
Bpu1102I GCTNAGC 1 cut(s) 362
BpuEI CTTGAG 1 cut(s) 101
BpuMI CCSGG 2 cut(s) 207, 432
BsaAI YACGTR 1 cut(s) 273
BsaHI GRCGYC 1 cut(s) 156
BsaJI CCNNGG 2 cut(s) 6, 315
BsaWI WCCGGW 1 cut(s) 453
BsaXI ACNNNNNCTCC 4 cut(s) 523, 553, 788, 818
Bsc4I CCNNNNNNNGG 2 cut(s) 438, 442
Bse118I RCCGGY 1 cut(s) 453
Bse1I ACTGG 2 cut(s) 237, 351
Bse21I CCTNAGG 1 cut(s) 546
Bse3DI GCAATG 2 cut(s) 602, 772
BseDI CCNNGG 2 cut(s) 6, 315
BseLI CCNNNNNNNGG 2 cut(s) 438, 442
BseMI GCAATG 2 cut(s) 602, 772
BseMII CTCAG 2 cut(s) 116, 560
BseNI ACTGG 2 cut(s) 237, 351
BseRI GAGGAG 2 cut(s) 956, 1094
BseSI GKGCMC 1 cut(s) 432
BseX3I CGGCCG 1 cut(s) 9
BseXI GCAGC 1 cut(s) 361
BseYI CCCAGC 1 cut(s) 581
Bsh1236I CGCG 3 cut(s) 359, 391, 860
Bsh1285I CGRYCG 3 cut(s) 12, 454, 756
BshFI GGCC 7 cut(s) 11, 409, 430, 435, 544, 743, 832
BshNI GGYRCC 2 cut(s) 223, 814
BshTI ACCGGT 1 cut(s) 453
BsiEI CGRYCG 3 cut(s) 12, 454, 756
BsiSI CCGG 4 cut(s) 113, 206, 432, 454
BslI CCNNNNNNNGG 2 cut(s) 438, 442
BsnI GGCC 7 cut(s) 11, 409, 430, 435, 544, 743, 832
Bsp120I GGGCCC 1 cut(s) 428
Bsp1286I GDGCHC 1 cut(s) 432
Bsp143I GATC 5 cut(s) 60, 418, 445, 753, 979
Bsp1720I GCTNAGC 1 cut(s) 362
BspACI CCGC 7 cut(s) 389, 614, 624, 714, 725, 777, 938
BspANI GGCC 7 cut(s) 11, 409, 430, 435, 544, 743, 832
BspCNI CTCAG 2 cut(s) 117, 559
BspFNI CGCG 3 cut(s) 359, 391, 860
BspLI GGNNCC 7 cut(s) 225, 312, 351, 430, 447, 723, 816
BspPI GGATC 2 cut(s) 440, 453
BspT107I GGYRCC 2 cut(s) 223, 814
BsrDI GCAATG 2 cut(s) 602, 772
BsrFI RCCGGY 1 cut(s) 453
BsrI ACTGG 2 cut(s) 237, 351
BssAI RCCGGY 1 cut(s) 453
BssECI CCNNGG 2 cut(s) 6, 315
BssMI GATC 5 cut(s) 60, 418, 445, 753, 979
BssNI GRCGYC 1 cut(s) 156
BssT1I CCWWGG 1 cut(s) 315
Bst4CI ACNGT 1 cut(s) 977
Bst6I CTCTTC 1 cut(s) 1013
BstACI GRCGYC 1 cut(s) 156
BstBAI YACGTR 1 cut(s) 273
BstC8I GCNNGC 2 cut(s) 368, 372
BstDEI CTNAG 5 cut(s) 125, 362, 536, 546, 706
BstFNI CGCG 3 cut(s) 359, 391, 860
BstH2I RGCGCY 1 cut(s) 251
BstHHI GCGC 2 cut(s) 250, 361
BstKTI GATC 5 cut(s) 63, 421, 448, 756, 982
BstMBI GATC 5 cut(s) 60, 418, 445, 753, 979
BstMCI CGRYCG 3 cut(s) 12, 454, 756
BstNSI RCATGY 2 cut(s) 46, 696
BstSCI CCNGG 2 cut(s) 205, 430
BstSFI CTRYAG 1 cut(s) 910
BstSLI GKGCMC 1 cut(s) 432
BstSNI TACGTA 1 cut(s) 273
BstUI CGCG 3 cut(s) 359, 391, 860
BstV1I GCAGC 1 cut(s) 361
BstX2I RGATCY 1 cut(s) 445
BstYI RGATCY 1 cut(s) 445
BstZI CGGCCG 1 cut(s) 9
Bsu36I CCTNAGG 1 cut(s) 546
BsuI GTATCC 2 cut(s) 181, 262
BsuRI GGCC 7 cut(s) 11, 409, 430, 435, 544, 743, 832
BtsI GCAGTG 1 cut(s) 897
BtsIMutI CAGTG 2 cut(s) 230, 897
Cac8I GCNNGC 2 cut(s) 368, 372
CfoI GCGC 2 cut(s) 250, 361
Cfr10I RCCGGY 1 cut(s) 453
Cfr13I GGNCC 5 cut(s) 407, 428, 429, 542, 742
CseI GACGC 1 cut(s) 164
Csp6I GTAC 6 cut(s) 51, 274, 304, 457, 631, 815
CspAI ACCGGT 1 cut(s) 453
CspCI CAANNNNNGTGG 2 cut(s) 219, 254
CviAII CATG 7 cut(s) 43, 58, 133, 526, 693, 983, 1009
CviQI GTAC 6 cut(s) 51, 274, 304, 457, 631, 815
DdeI CTNAG 5 cut(s) 125, 362, 536, 546, 706
DpnI GATC 5 cut(s) 62, 420, 447, 755, 981
DpnII GATC 5 cut(s) 60, 418, 445, 753, 979
EaeI YGGCCR 3 cut(s) 9, 433, 830
EagI CGGCCG 1 cut(s) 9
Eam1104I CTCTTC 1 cut(s) 1013
EarI CTCTTC 1 cut(s) 1013
EciI GGCGGA 1 cut(s) 953
EclXI CGGCCG 1 cut(s) 9
Eco105I TACGTA 1 cut(s) 273
Eco130I CCWWGG 1 cut(s) 315
Eco24I GRGCYC 1 cut(s) 432
Eco52I CGGCCG 1 cut(s) 9
Eco81I CCTNAGG 1 cut(s) 546
EcoT14I CCWWGG 1 cut(s) 315
EcoT38I GRGCYC 1 cut(s) 432
ErhI CCWWGG 1 cut(s) 315
FaeI CATG 7 cut(s) 46, 61, 136, 529, 696, 986, 1012
FatI CATG 7 cut(s) 42, 57, 132, 525, 692, 982, 1008
FauI CCCGC 2 cut(s) 707, 770
FbaI TGATCA 1 cut(s) 979
FblI GTMKAC 1 cut(s) 657
Fnu4HI GCNGC 2 cut(s) 375, 389
FriOI GRGCYC 1 cut(s) 432
Fsp4HI GCNGC 2 cut(s) 375, 389
FspBI CTAG 2 cut(s) 996, 1064
GlaI GCGC 2 cut(s) 249, 360
GluI GCNGC 2 cut(s) 375, 389
GsaI CCCAGC 1 cut(s) 585
GsuI CTGGAG 1 cut(s) 368
HaeII RGCGCY 1 cut(s) 251
HaeIII GGCC 7 cut(s) 11, 409, 430, 435, 544, 743, 832
HapII CCGG 4 cut(s) 113, 206, 432, 454
HgaI GACGC 1 cut(s) 164
HhaI GCGC 2 cut(s) 250, 361
Hin1I GRCGYC 1 cut(s) 156
Hin1II CATG 7 cut(s) 46, 61, 136, 529, 696, 986, 1012
Hin6I GCGC 2 cut(s) 248, 359
HinP1I GCGC 2 cut(s) 248, 359
HincII GTYRAC 1 cut(s) 198
HindII GTYRAC 1 cut(s) 198
HinfI GANTC 5 cut(s) 14, 85, 412, 532, 736
HpaII CCGG 4 cut(s) 113, 206, 432, 454
HphI GGTGA 7 cut(s) 481, 562, 883, 943, 989, 1000, 1012
Hpy166II GTNNAC 7 cut(s) 40, 198, 397, 611, 631, 652, 658
Hpy188I TCNGA 2 cut(s) 126, 758
Hpy188III TCNNGA 2 cut(s) 416, 449
Hpy8I GTNNAC 7 cut(s) 40, 198, 397, 611, 631, 652, 658
Hpy99I CGWCG 3 cut(s) 68, 121, 247
HpyAV CCTTC 4 cut(s) 256, 288, 868, 1061
HpyCH4III ACNGT 1 cut(s) 977
HpyCH4IV ACGT 6 cut(s) 53, 66, 119, 272, 335, 654
HpyCH4V TGCA 2 cut(s) 696, 1052
HpyF3I CTNAG 5 cut(s) 125, 362, 536, 546, 706
HpySE526I ACGT 6 cut(s) 53, 66, 119, 272, 335, 654
Hsp92I GRCGYC 1 cut(s) 156
Hsp92II CATG 7 cut(s) 46, 61, 136, 529, 696, 986, 1012
HspAI GCGC 2 cut(s) 248, 359
KpnI GGTACC 1 cut(s) 818
Ksp22I TGATCA 1 cut(s) 979
Kzo9I GATC 5 cut(s) 60, 418, 445, 753, 979
LmnI GCTCC 4 cut(s) 349, 522, 1028, 1081
Lsp1109I GCAGC 1 cut(s) 361
MaeI CTAG 2 cut(s) 996, 1064
MaeII ACGT 6 cut(s) 53, 66, 119, 272, 335, 654
MalI GATC 5 cut(s) 62, 420, 447, 755, 981
MboI GATC 5 cut(s) 60, 418, 445, 753, 979
MboII GAAGA 2 cut(s) 745, 1030
MflI RGATCY 1 cut(s) 445
MhlI GDGCHC 1 cut(s) 432
MluCI AATT 5 cut(s) 162, 698, 878, 925, 1074
MluI ACGCGT 1 cut(s) 858
MlyI GAGTC 2 cut(s) 23, 541
MseI TTAA 2 cut(s) 423, 1073
MspA1I CMGCKG 1 cut(s) 626
MspI CCGG 4 cut(s) 113, 206, 432, 454
MspR9I CCNGG 2 cut(s) 207, 432
MvnI CGCG 3 cut(s) 359, 391, 860
NciI CCSGG 2 cut(s) 207, 432
NdeII GATC 5 cut(s) 60, 418, 445, 753, 979
NlaIII CATG 7 cut(s) 46, 61, 136, 529, 696, 986, 1012
NlaIV GGNNCC 7 cut(s) 225, 312, 351, 430, 447, 723, 816
NmeAIII GCCGAG 1 cut(s) 37
NspI RCATGY 2 cut(s) 46, 696
PciI ACATGT 1 cut(s) 42
PcsI WCGNNNNNNNCGW 2 cut(s) 72, 374
PfeI GAWTC 3 cut(s) 85, 412, 736
PinAI ACCGGT 1 cut(s) 453
PkrI GCNGC 2 cut(s) 376, 390
Ple19I CGATCG 1 cut(s) 756
PleI GAGTC 2 cut(s) 22, 540
PpsI GAGTC 2 cut(s) 22, 540
Ppu21I YACGTR 1 cut(s) 273
PscI ACATGT 1 cut(s) 42
PspFI CCCAGC 1 cut(s) 581
PspN4I GGNNCC 7 cut(s) 225, 312, 351, 430, 447, 723, 816
PspOMI GGGCCC 1 cut(s) 428
PspPI GGNCC 5 cut(s) 407, 428, 429, 542, 742
PsuI RGATCY 1 cut(s) 445
PvuI CGATCG 1 cut(s) 756
RsaI GTAC 6 cut(s) 52, 275, 305, 458, 632, 816
RsaNI GTAC 6 cut(s) 51, 274, 304, 457, 631, 815
SaqAI TTAA 2 cut(s) 423, 1073
SatI GCNGC 2 cut(s) 375, 389
Sau3AI GATC 5 cut(s) 60, 418, 445, 753, 979
Sau96I GGNCC 5 cut(s) 407, 428, 429, 542, 742
SchI GAGTC 2 cut(s) 23, 541
ScrFI CCNGG 2 cut(s) 207, 432
SduI GDGCHC 1 cut(s) 432
SfcI CTRYAG 1 cut(s) 910
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
SnaBI TACGTA 1 cut(s) 273
Sse9I AATT 5 cut(s) 162, 698, 878, 925, 1074
SsiI CCGC 7 cut(s) 389, 614, 624, 714, 725, 777, 938
SspMI CTAG 2 cut(s) 996, 1064
StyD4I CCNGG 2 cut(s) 205, 430
StyI CCWWGG 1 cut(s) 315
TaaI ACNGT 1 cut(s) 977
TaiI ACGT 6 cut(s) 56, 69, 122, 275, 338, 657
TaqI TCGA 1 cut(s) 63
TasI AATT 5 cut(s) 162, 698, 878, 925, 1074
TauI GCSGC 1 cut(s) 391
TfiI GAWTC 3 cut(s) 85, 412, 736
Tru1I TTAA 2 cut(s) 423, 1073
Tru9I TTAA 2 cut(s) 423, 1073
TscAI CASTG 2 cut(s) 237, 897
TseI GCWGC 1 cut(s) 374
TspDTI ATGAA 4 cut(s) 121, 128, 754, 869
TspGWI ACGGA 2 cut(s) 206, 703
TspRI CASTG 2 cut(s) 237, 897
XapI RAATTY 1 cut(s) 162
XceI RCATGY 2 cut(s) 46, 696
XmiI GTMKAC 1 cut(s) 657
XspI CTAG 2 cut(s) 996, 1064
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.