FvH4_2g02630

UDP-glucose flavonoid 3-O-glucosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0002688
Physical Location & Seq
Reverse (-)
2092642 .. 2094586
1945 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g02630.t1

Sequence Viewer

Length: 723 bp
ATGGTGAAAGCTTCTCCGATCCCAGCCACATCTGGATGGAAATCTTCCGAAGGATATGGCAGCTTGAATCCCGACCGGTACGAGAGCGTGGTGAAGTGGCTCGATGACCAGCCTCCGTCATCGGTGGTGTTGTTGTGCTTTGGGAGCATGGGAAGTCTTAATGGGCCTCAGGTGAGGGAGATTGCATTTGGGCTTGAAAGAGCCGGGTTTCGGTTCTTATGGGCTTTGCGTGAACCGCCCAAGTCCAATGTATACCTACCAACCGACCCCACAAACGTCGACGAGGTATTGCCGGATGGGTTTTTGGAACAGACATGTAAATTGGGCTTAGTGTGCGGGTGGGTCCCACAGGTGAAGATTCTAGCCCACCAAGCGATCGGAGGGTTTGTATCGCATTGCGGGTGGAACTCGATTTTGGAAAGCTTGTGGTATGGGGTACCGATCGCCACGTGGCCGATTTACGCGGAGCAACAAATGAATGCCTTTGAGATGGTGAAGGAATTGGGATTGGCGGTCGAGATTAGGGTGGACTATAGGGAGGGGAGTAAGATTGTGATGGCGGAGGAGGTGGAGAGAAGCATAAAGAGGTTGATGGACGGTGATCACGGAGTGAGGACTAGGGTGAAAGACATGAGAGAGAAGAGTAGGATGGCGTTGATGGAAAATGGGTCTGCATACCAAGCATTAGAAGATTTAATTGAGGAATTATTGCCCAAGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

241

Amino Acids

26.85

Weight (kDa)

5.14

Isoelectric Point (pI)

35.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 41 - 176 1.3e-21 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 436
AccB1I GGYRCC 1 cut(s) 436
AccI GTMKAC 2 cut(s) 252, 279
AccII CGCG 1 cut(s) 464
AciI CCGC 6 cut(s) 236, 336, 399, 464, 512, 560
AclWI GGATC 1 cut(s) 13
AcoI YGGCCR 1 cut(s) 452
AcvI CACGTG 1 cut(s) 450
AdeI CACNNNGTG 1 cut(s) 610
AfaI GTAC 2 cut(s) 80, 438
AfiI CCNNNNNNNGG 1 cut(s) 210
AflIII ACRYGT 1 cut(s) 314
AgeI ACCGGT 1 cut(s) 75
AgsI TTSAA 2 cut(s) 67, 197
AjuI GAANNNNNNNTTGG 2 cut(s) 398, 430
AluBI AGCT 3 cut(s) 11, 63, 423
AluI AGCT 3 cut(s) 11, 63, 423
AlwI GGATC 1 cut(s) 13
AoxI GGCC 2 cut(s) 164, 452
ApeKI GCWGC 1 cut(s) 60
AsiGI ACCGGT 1 cut(s) 75
Asp718I GGTACC 1 cut(s) 436
AspS9I GGNCC 2 cut(s) 164, 343
AsuC2I CCSGG 1 cut(s) 205
AsuHPI GGTGA 7 cut(s) 16, 103, 184, 364, 505, 611, 634
AvaII GGWCC 1 cut(s) 343
AxyI CCTNAGG 1 cut(s) 168
BanI GGYRCC 1 cut(s) 436
BbrPI CACGTG 1 cut(s) 450
BbvI GCAGC 1 cut(s) 72
BccI CCATC 7 cut(s) 30, 290, 484, 550, 586, 643, 652
BclI TGATCA 1 cut(s) 601
BcnI CCSGG 1 cut(s) 205
BfaI CTAG 2 cut(s) 362, 618
BfmI CTRYAG 1 cut(s) 532
BisI GCNGC 1 cut(s) 61
BlsI GCNGC 1 cut(s) 62
Bme1390I CCNGG 1 cut(s) 205
Bme18I GGWCC 1 cut(s) 343
BmgT120I GGNCC 2 cut(s) 164, 343
BmiI GGNNCC 3 cut(s) 344, 345, 438
BmrFI CCNGG 1 cut(s) 205
BpuMI CCSGG 1 cut(s) 205
BsaAI YACGTR 1 cut(s) 450
BsaBI GATNNNNATC 1 cut(s) 40
BsaJI CCNNGG 1 cut(s) 714
BsaWI WCCGGW 1 cut(s) 75
BsaXI ACNNNNNCTCC 2 cut(s) 372, 402
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse118I RCCGGY 1 cut(s) 75
Bse21I CCTNAGG 1 cut(s) 168
Bse3DI GCAATG 1 cut(s) 394
Bse8I GATNNNNATC 1 cut(s) 40
BseDI CCNNGG 1 cut(s) 714
BseGI GGATG 3 cut(s) 41, 301, 654
BseJI GATNNNNATC 1 cut(s) 40
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMI GCAATG 1 cut(s) 394
BseMII CTCAG 1 cut(s) 182
BseRI GAGGAG 1 cut(s) 578
BseXI GCAGC 1 cut(s) 72
BseYI CCCAGC 1 cut(s) 22
Bsh1236I CGCG 1 cut(s) 464
Bsh1285I CGRYCG 4 cut(s) 76, 378, 444, 516
BshFI GGCC 2 cut(s) 166, 454
BshNI GGYRCC 1 cut(s) 436
BshTI ACCGGT 1 cut(s) 75
BsiEI CGRYCG 4 cut(s) 76, 378, 444, 516
BsiSI CCGG 3 cut(s) 76, 204, 293
BslFI GGGAC 1 cut(s) 329
BslI CCNNNNNNNGG 1 cut(s) 210
BsmFI GGGAC 1 cut(s) 329
BsmI GAATGC 1 cut(s) 484
BsnI GGCC 2 cut(s) 166, 454
Bsp143I GATC 4 cut(s) 18, 375, 441, 601
BspACI CCGC 6 cut(s) 236, 336, 399, 464, 512, 560
BspANI GGCC 2 cut(s) 166, 454
BspCNI CTCAG 1 cut(s) 181
BspFNI CGCG 1 cut(s) 464
BspLI GGNNCC 3 cut(s) 344, 345, 438
BspPI GGATC 1 cut(s) 13
BspT107I GGYRCC 1 cut(s) 436
BsrDI GCAATG 1 cut(s) 394
BsrFI RCCGGY 1 cut(s) 75
BssAI RCCGGY 1 cut(s) 75
BssECI CCNNGG 1 cut(s) 714
BssMI GATC 4 cut(s) 18, 375, 441, 601
BssNAI GTATAC 1 cut(s) 253
BssT1I CCWWGG 1 cut(s) 714
Bst1107I GTATAC 1 cut(s) 253
Bst4CI ACNGT 1 cut(s) 599
Bst6I CTCTTC 1 cut(s) 635
BstBAI YACGTR 1 cut(s) 450
BstDEI CTNAG 2 cut(s) 168, 328
BstF5I GGATG 3 cut(s) 41, 301, 654
BstFNI CGCG 1 cut(s) 464
BstKTI GATC 4 cut(s) 21, 378, 444, 604
BstMBI GATC 4 cut(s) 18, 375, 441, 601
BstMCI CGRYCG 4 cut(s) 76, 378, 444, 516
BstMWI GCNNNNNNNGC 5 cut(s) 144, 235, 333, 371, 680
BstNSI RCATGY 1 cut(s) 318
BstSCI CCNGG 1 cut(s) 203
BstSFI CTRYAG 1 cut(s) 532
BstUI CGCG 1 cut(s) 464
BstV1I GCAGC 1 cut(s) 72
BstZ17I GTATAC 1 cut(s) 253
Bsu36I CCTNAGG 1 cut(s) 168
BsuRI GGCC 2 cut(s) 166, 454
BtsCI GGATG 3 cut(s) 41, 301, 654
Cfr10I RCCGGY 1 cut(s) 75
Cfr13I GGNCC 2 cut(s) 164, 343
Csp6I GTAC 2 cut(s) 79, 437
CspAI ACCGGT 1 cut(s) 75
CviAII CATG 3 cut(s) 148, 315, 631
CviQI GTAC 2 cut(s) 79, 437
DdeI CTNAG 2 cut(s) 168, 328
DpnI GATC 4 cut(s) 20, 377, 443, 603
DpnII GATC 4 cut(s) 18, 375, 441, 601
DraIII CACNNNGTG 1 cut(s) 610
EaeI YGGCCR 1 cut(s) 452
Eam1104I CTCTTC 1 cut(s) 635
EarI CTCTTC 1 cut(s) 635
EciI GGCGGA 1 cut(s) 575
Eco130I CCWWGG 1 cut(s) 714
Eco47I GGWCC 1 cut(s) 343
Eco72I CACGTG 1 cut(s) 450
Eco81I CCTNAGG 1 cut(s) 168
EcoO109I RGGNCCY 1 cut(s) 343
EcoT14I CCWWGG 1 cut(s) 714
ErhI CCWWGG 1 cut(s) 714
FaeI CATG 3 cut(s) 151, 318, 634
FaqI GGGAC 1 cut(s) 329
FatI CATG 3 cut(s) 147, 314, 630
FauI CCCGC 2 cut(s) 329, 392
FbaI TGATCA 1 cut(s) 601
FblI GTMKAC 2 cut(s) 252, 279
Fnu4HI GCNGC 1 cut(s) 61
FokI GGATG 3 cut(s) 48, 308, 661
Fsp4HI GCNGC 1 cut(s) 61
FspBI CTAG 2 cut(s) 362, 618
GluI GCNGC 1 cut(s) 61
GsaI CCCAGC 1 cut(s) 26
HaeIII GGCC 2 cut(s) 166, 454
HapII CCGG 3 cut(s) 76, 204, 293
Hin1II CATG 3 cut(s) 151, 318, 634
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HindIII AAGCTT 2 cut(s) 9, 421
HinfI GANTC 2 cut(s) 67, 358
HpaII CCGG 3 cut(s) 76, 204, 293
HphI GGTGA 7 cut(s) 16, 103, 184, 364, 505, 611, 634
Hpy166II GTNNAC 4 cut(s) 233, 253, 280, 529
Hpy188I TCNGA 3 cut(s) 18, 49, 380
Hpy188III TCNNGA 3 cut(s) 33, 71, 517
Hpy8I GTNNAC 4 cut(s) 233, 253, 280, 529
Hpy99I CGWCG 2 cut(s) 281, 284
HpyAV CCTTC 2 cut(s) 44, 490
HpyCH4III ACNGT 1 cut(s) 599
HpyCH4IV ACGT 2 cut(s) 276, 449
HpyCH4V TGCA 2 cut(s) 185, 674
HpyF10VI GCNNNNNNNGC 5 cut(s) 144, 235, 333, 371, 680
HpyF3I CTNAG 2 cut(s) 168, 328
HpySE526I ACGT 2 cut(s) 276, 449
Hsp92II CATG 3 cut(s) 151, 318, 634
KflI GGGWCCC 1 cut(s) 343
KpnI GGTACC 1 cut(s) 440
Ksp22I TGATCA 1 cut(s) 601
Kzo9I GATC 4 cut(s) 18, 375, 441, 601
LmnI GCTCC 2 cut(s) 144, 466
LpnPI CCDG 8 cut(s) 18, 36, 89, 122, 155, 217, 306, 335
Lsp1109I GCAGC 1 cut(s) 72
MaeI CTAG 2 cut(s) 362, 618
MaeII ACGT 2 cut(s) 276, 449
MalI GATC 4 cut(s) 20, 377, 443, 603
MboI GATC 4 cut(s) 18, 375, 441, 601
MboII GAAGA 4 cut(s) 36, 367, 652, 701
MluCI AATT 4 cut(s) 320, 500, 696, 704
MseI TTAA 2 cut(s) 159, 695
MslI CAYNNNNRTG 1 cut(s) 34
MspI CCGG 3 cut(s) 76, 204, 293
MspR9I CCNGG 1 cut(s) 205
Mva1269I GAATGC 1 cut(s) 484
MvnI CGCG 1 cut(s) 464
MwoI GCNNNNNNNGC 5 cut(s) 144, 235, 333, 371, 680
NciI CCSGG 1 cut(s) 205
NdeII GATC 4 cut(s) 18, 375, 441, 601
NlaIII CATG 3 cut(s) 151, 318, 634
NlaIV GGNNCC 3 cut(s) 344, 345, 438
NspI RCATGY 1 cut(s) 318
PciI ACATGT 1 cut(s) 314
PctI GAATGC 1 cut(s) 484
PfeI GAWTC 2 cut(s) 67, 358
PinAI ACCGGT 1 cut(s) 75
PkrI GCNGC 1 cut(s) 62
Ple19I CGATCG 2 cut(s) 378, 444
PmaCI CACGTG 1 cut(s) 450
PmlI CACGTG 1 cut(s) 450
Ppu21I YACGTR 1 cut(s) 450
PpuMI RGGWCCY 1 cut(s) 343
PscI ACATGT 1 cut(s) 314
Psp5II RGGWCCY 1 cut(s) 343
PspCI CACGTG 1 cut(s) 450
PspFI CCCAGC 1 cut(s) 22
PspN4I GGNNCC 3 cut(s) 344, 345, 438
PspPI GGNCC 2 cut(s) 164, 343
PspPPI RGGWCCY 1 cut(s) 343
PvuI CGATCG 2 cut(s) 378, 444
RsaI GTAC 2 cut(s) 80, 438
RsaNI GTAC 2 cut(s) 79, 437
RseI CAYNNNNRTG 1 cut(s) 34
SalI GTCGAC 1 cut(s) 278
SaqAI TTAA 2 cut(s) 159, 695
SatI GCNGC 1 cut(s) 61
Sau3AI GATC 4 cut(s) 18, 375, 441, 601
Sau96I GGNCC 2 cut(s) 164, 343
ScrFI CCNGG 1 cut(s) 205
SfcI CTRYAG 1 cut(s) 532
SgrDI CGTCGACG 1 cut(s) 278
SinI GGWCC 1 cut(s) 343
SmiMI CAYNNNNRTG 1 cut(s) 34
Sse9I AATT 4 cut(s) 320, 500, 696, 704
SsiI CCGC 6 cut(s) 236, 336, 399, 464, 512, 560
SspMI CTAG 2 cut(s) 362, 618
StyD4I CCNGG 1 cut(s) 203
StyI CCWWGG 1 cut(s) 714
TaaI ACNGT 1 cut(s) 599
TaiI ACGT 2 cut(s) 279, 452
TaqI TCGA 4 cut(s) 102, 279, 410, 516
TasI AATT 4 cut(s) 320, 500, 696, 704
TfiI GAWTC 2 cut(s) 67, 358
Tru1I TTAA 2 cut(s) 159, 695
Tru9I TTAA 2 cut(s) 159, 695
TseI GCWGC 1 cut(s) 60
TspDTI ATGAA 1 cut(s) 491
TspGWI ACGGA 2 cut(s) 105, 621
VpaK11BI GGWCC 1 cut(s) 343
XceI RCATGY 1 cut(s) 318
XmiI GTMKAC 2 cut(s) 252, 279
XspI CTAG 2 cut(s) 362, 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.