Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002688

Physical Location & Seq

Genomic Coordinates Reverse (-)

15589274 .. 15589630

Gene Structure 357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG153400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGAATACGGATGACGAACTTGAACCACATGCACTTAATATTGTTACTGATGGTCGAGGTCCGCCGGTTTATCCGGTCGGACCAGTCATTGCTGTCACTGGACCGGATGACTGGTATTCAGAGAAGGTTAGTCGTGATACCATCATGAAATGGGTAGATAATCAACCTTCATCTTCTGTGGTATTTCTGTGCTTTGGAAGCATGGGAAGTCTTACCGGACCTCAAGTGAGAGAGGTCGCAATTGGGCTTGAGCGGGCCAAGGTTCGTTTCGTGTGGTCCTTGCGTGAGCCGCCCAAGGCATATTGGGCCTTCCGAGCAAGTACATGGATCTGGAGAAAGTGGTTGATGGCCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

118

Amino Acids

13.35

Weight (kDa)

6.56

Isoelectric Point (pI)

24.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02620 FvH4_2g02630 FvH4_3g12970 FvH4_3g12970 FvH4_3g17180 FvH4_3g17181
malus_domestica	MD05G1246700.v1.1
prunus_persica	Prupe.4G117900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0153371 RchiOBHm_Chr5g0021081 RchiOBHm_Chr5g0021091 RchiOBHm_Chr5g0021101
rosa_laevigata	RLG00000032582 RLG00000032583 RLG00000032584 RLG00000032587
rosa_multiflora	Rmu_co7967648.1_g000001 Rmu_co8022450.1_g000001 Rmu_co8209284.1_g000001 Rmu_co8295101.1_g000001 Rmu_sc0002467.1_g000005 Rmu_sc0041861.1_g000001 Rmu_ssc0000244.1_g000020 Rmu_ssc0000244.1_g000027 Rmu_ssc0000244.1_g000028
rosa_roxburghii	Rroxscaffold_1G00057340 Rroxscaffold_1G00057380
rosa_rugosa	Rorug05G0064300 Rorug05G0064400 Rorug05G0064500 Rorug05G0064700
rosa_samantha	Rh2AG501400 Rh5CG166400 Rh5CG166500 Rh5CG166600 Rh5DG153100 Rh5DG153300 Rh5DG153400
rosa_wichuraiana	Rw5G013670 Rw5G013680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	253
AciI	CCGC	3 cut(s)	62, 253, 290
AclWI	GGATC	1 cut(s)	335
AfaI	GTAC	1 cut(s)	322
AgsI	TTSAA	1 cut(s)	23
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AlwI	GGATC	1 cut(s)	335
AoxI	GGCC	3 cut(s)	255, 306, 348
AspS9I	GGNCC	7 cut(s)	59, 80, 101, 218, 255, 276, 306
AvaII	GGWCC	5 cut(s)	59, 80, 101, 218, 276
BccI	CCATC	3 cut(s)	44, 149, 340
BisI	GCNGC	1 cut(s)	290
BlsI	GCNGC	1 cut(s)	291
Bme18I	GGWCC	5 cut(s)	59, 80, 101, 218, 276
BmgT120I	GGNCC	7 cut(s)	59, 80, 101, 218, 255, 276, 306
BpmI	CTGGAG	1 cut(s)	352
BpuEI	CTTGAG	2 cut(s)	207, 269
BsaJI	CCNNGG	2 cut(s)	258, 294
BsaWI	WCCGGW	3 cut(s)	73, 103, 215
Bse118I	RCCGGY	1 cut(s)	64
Bse1I	ACTGG	3 cut(s)	83, 103, 116
Bse3DI	GCAATG	1 cut(s)	87
BseDI	CCNNGG	2 cut(s)	258, 294
BseGI	GGATG	2 cut(s)	16, 112
BseMI	GCAATG	1 cut(s)	87
BseNI	ACTGG	3 cut(s)	83, 103, 116
Bsh1285I	CGRYCG	1 cut(s)	78
BshFI	GGCC	3 cut(s)	257, 308, 350
BsiEI	CGRYCG	1 cut(s)	78
BsiSI	CCGG	4 cut(s)	65, 74, 104, 216
BsnI	GGCC	3 cut(s)	257, 308, 350
Bsp143I	GATC	1 cut(s)	327
BspACI	CCGC	3 cut(s)	62, 253, 290
BspANI	GGCC	3 cut(s)	257, 308, 350
BspHI	TCATGA	1 cut(s)	144
BspPI	GGATC	1 cut(s)	335
BsrBI	CCGCTC	1 cut(s)	253
BsrDI	GCAATG	1 cut(s)	87
BsrFI	RCCGGY	1 cut(s)	64
BsrI	ACTGG	3 cut(s)	83, 103, 116
BssAI	RCCGGY	1 cut(s)	64
BssECI	CCNNGG	2 cut(s)	258, 294
BssMI	GATC	1 cut(s)	327
BssT1I	CCWWGG	2 cut(s)	258, 294
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	1 cut(s)	354
BstF5I	GGATG	2 cut(s)	16, 112
BstKTI	GATC	1 cut(s)	330
BstMBI	GATC	1 cut(s)	327
BstMCI	CGRYCG	1 cut(s)	78
BstMWI	GCNNNNNNNGC	4 cut(s)	198, 289, 305, 314
BstNSI	RCATGY	1 cut(s)	32
BstX2I	RGATCY	1 cut(s)	327
BstYI	RGATCY	1 cut(s)	327
BsuRI	GGCC	3 cut(s)	257, 308, 350
BtsCI	GGATG	2 cut(s)	16, 112
BtsIMutI	CAGTG	1 cut(s)	96
Cac8I	GCNNGC	1 cut(s)	255
CciI	TCATGA	1 cut(s)	144
Cfr10I	RCCGGY	1 cut(s)	64
Cfr13I	GGNCC	7 cut(s)	59, 80, 101, 218, 255, 276, 306
Csp6I	GTAC	1 cut(s)	321
CviAII	CATG	4 cut(s)	29, 145, 202, 324
CviJI	RGCY	5 cut(s)	247, 257, 289, 308, 350
CviKI_1	RGCY	5 cut(s)	247, 257, 289, 308, 350
CviQI	GTAC	1 cut(s)	321
DdeI	CTNAG	1 cut(s)	354
DpnI	GATC	1 cut(s)	329
DpnII	GATC	1 cut(s)	327
EciI	GGCGGA	1 cut(s)	51
Eco130I	CCWWGG	2 cut(s)	258, 294
Eco47I	GGWCC	5 cut(s)	59, 80, 101, 218, 276
EcoT14I	CCWWGG	2 cut(s)	258, 294
ErhI	CCWWGG	2 cut(s)	258, 294
FaeI	CATG	4 cut(s)	32, 148, 205, 327
FaiI	YATR	5 cut(s)	30, 146, 203, 301, 325
FatI	CATG	4 cut(s)	28, 144, 201, 323
FauI	CCCGC	1 cut(s)	246
Fnu4HI	GCNGC	1 cut(s)	290
FokI	GGATG	2 cut(s)	23, 119
Fsp4HI	GCNGC	1 cut(s)	290
GluI	GCNGC	1 cut(s)	290
GsuI	CTGGAG	1 cut(s)	352
HaeIII	GGCC	3 cut(s)	257, 308, 350
HapII	CCGG	4 cut(s)	65, 74, 104, 216
Hin1II	CATG	4 cut(s)	32, 148, 205, 327
HpaII	CCGG	4 cut(s)	65, 74, 104, 216
Hpy188I	TCNGA	3 cut(s)	80, 121, 314
Hpy188III	TCNNGA	3 cut(s)	134, 145, 331
HpyAV	CCTTC	3 cut(s)	118, 177, 319
HpyCH4V	TGCA	1 cut(s)	32
HpyF10VI	GCNNNNNNNGC	4 cut(s)	198, 289, 305, 314
HpyF3I	CTNAG	1 cut(s)	354
Hsp92II	CATG	4 cut(s)	32, 148, 205, 327
Kzo9I	GATC	1 cut(s)	327
LpnPI	CCDG	8 cut(s)	78, 84, 87, 96, 97, 117, 229, 316
MaeIII	GTNAC	2 cut(s)	43, 94
MalI	GATC	1 cut(s)	329
MbiI	CCGCTC	1 cut(s)	253
MboI	GATC	1 cut(s)	327
MboII	GAAGA	1 cut(s)	165
MfeI	CAATTG	1 cut(s)	240
MflI	RGATCY	1 cut(s)	327
MluCI	AATT	1 cut(s)	240
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	3 cut(s)	50, 226, 231
MseI	TTAA	1 cut(s)	36
MspI	CCGG	4 cut(s)	65, 74, 104, 216
MunI	CAATTG	1 cut(s)	240
MwoI	GCNNNNNNNGC	4 cut(s)	198, 289, 305, 314
NdeII	GATC	1 cut(s)	327
NlaIII	CATG	4 cut(s)	32, 148, 205, 327
NmuCI	GTSAC	1 cut(s)	94
NspI	RCATGY	1 cut(s)	32
PagI	TCATGA	1 cut(s)	144
PkrI	GCNGC	1 cut(s)	291
PspPI	GGNCC	7 cut(s)	59, 80, 101, 218, 255, 276, 306
PsuI	RGATCY	1 cut(s)	327
RsaI	GTAC	1 cut(s)	322
RsaNI	GTAC	1 cut(s)	321
SaqAI	TTAA	1 cut(s)	36
SatI	GCNGC	1 cut(s)	290
Sau3AI	GATC	1 cut(s)	327
Sau96I	GGNCC	7 cut(s)	59, 80, 101, 218, 255, 276, 306
SetI	ASST	6 cut(s)	61, 129, 169, 223, 237, 264
SinI	GGWCC	5 cut(s)	59, 80, 101, 218, 276
SmlI	CTYRAG	2 cut(s)	222, 248
SmoI	CTYRAG	2 cut(s)	222, 248
Sse9I	AATT	1 cut(s)	240
SsiI	CCGC	3 cut(s)	62, 253, 290
SspI	AATATT	1 cut(s)	40
StyI	CCWWGG	2 cut(s)	258, 294
TaqI	TCGA	1 cut(s)	55
TasI	AATT	1 cut(s)	240
TatI	WGTACW	1 cut(s)	320
TauI	GCSGC	1 cut(s)	292
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TscAI	CASTG	1 cut(s)	103
TseFI	GTSAC	1 cut(s)	94
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	3 cut(s)	17, 159, 161
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	103
VpaK11BI	GGWCC	5 cut(s)	59, 80, 101, 218, 276
XceI	RCATGY	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.