Rw5G013680

UDP-glucose flavonoid 3-O-glucosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0002688
Physical Location & Seq
Forward (+)
16191541 .. 16192959
1419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G013680.1

Sequence Viewer

Length: 1419 bp
ATGAGCAAATCGGAGGTGGTGTTCATCTCAACCCCCCAAATCGGAAACCTAGTCCCACTCGTCGAGTTCGCTCAGCTCCTAGTCAACCATGACCCTCGATTCCACGCCACCATCCTCATCATCACCATGCCCCAAAGACCCACCGTCAACACTTACATCCAATCCCGCGCCGCCGCGTCAGCCACCAGCATCAACTTCCTCCACCTCCCCATCGTAGATCCACTTGCAGAGGATGAGTACCAGTCCTCCATCGCCTACCTTTCCCTACTTATACAAAAACACAAGCCCCACGTAAAGCATGCTATAGCCGACCTCATGTCCTCTGCCGAGTCAAACCGAGTTGTTGCGTTTTTCGTGGACATGTTTTGTACGTCCATGATCGACGTTGGCAACGAGCTTGAGATTCCTTGTTATATGTATTTCGCTTCTCCGGCGACGTTTCTGAGCTTCATGTTTCATATTCCGGTCTTGGACGCCGAAATTTCAACCGACTTTGGCGACTTGGATACTGAGTTGACTATACCGGGTTTTGCTAACTCGGTGCCTCCACTGGTCTTGCCGACGGCGCTGTTGAGTAAGAAGGGGGATACGTACCGTTCCTATTTATCCCATACGGCAAGGTACAAGGAACCCAAGGGTATTGTTGTCAATACGTTCAAGGAATTGGAGCCACACGCGCTTAGCTCGCTGGCTGCGAGTGATGTGCCGCGAGTTCACGCTATTGGGCCGATTCTTGATCTTAATGGGCCGGGCCAATGGCAGGATCCGGACCGGTACGAGAGCGTGGTGAAGTGGCTTGATGACCAGCCTCCATCGTCTGTGGTGCTGTTGTGCTTTGGGAGCATGGGGAGTCTTAGTGGGCCTCAGGTGAGGGAGATAGCATTTGGGCTGGAAAGGGCTGGGTTTCGGTTCTTATGGGCATTGCGTGAATCGCCCAAGTCCGCTGTGTACCTCCCAAGCGACCCCGCAAACGTAGACGAGGTATTGCCGCACGGGTTTTTAGAACGGACATGCAAATTGGGCTTGGTGTGCGGGTGGGTTCCGCAAGTGAAGATTCTGGCCCACCAAGCGATCGGAGGGTTCATATCGCATTGCGGGTGGAACTCTATTTTGGAGAGCTTGTGGTATGGGGTACCGATTGCCACTTGGCCGATTTACGCAGAACAACAAATGAACGCGTTTGAGATGGTGAAGGAATTGGGATTGGCAGTAGAGATTAGGCTGGACTATAGGGAGGGAAGTAATTTGGTGATGGCGGAGGAGGTGGAGAGAAGCATAAAGAGCTTGATGGACGGTGATCATGTGGTGAGGACTAGGGTGAAAGACATGAGAGAGAAGAGTAGGGGAGCATTGATGGAAAATGGGTCTGCATACAAAGCACTAGAAGGTTTAATTGAGGAGCTAATGCCCAAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

472

Amino Acids

52.45

Weight (kDa)

5.35

Isoelectric Point (pI)

37.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 273 - 408 9.3e-21 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1132
AccB1I GGYRCC 2 cut(s) 541, 1132
AccI GTMKAC 1 cut(s) 975
AccII CGCG 5 cut(s) 168, 176, 677, 709, 1178
AccIII TCCGGA 1 cut(s) 766
AclWI GGATC 3 cut(s) 212, 758, 771
AcoI YGGCCR 1 cut(s) 1148
AcsI RAATTY 1 cut(s) 480
AcyI GRCGYC 1 cut(s) 474
AfaI GTAC 7 cut(s) 239, 370, 593, 623, 776, 950, 1134
AfiI CCNNNNNNNGG 2 cut(s) 41, 760
AflIII ACRYGT 2 cut(s) 360, 1176
AgeI ACCGGT 1 cut(s) 771
AgsI TTSAA 2 cut(s) 486, 658
AhdI GACNNNNNGTC 2 cut(s) 143, 316
AjuI GAANNNNNNNTTGG 2 cut(s) 1094, 1126
AloI GAACNNNNNNTCC 1 cut(s) 37
AluBI AGCT 7 cut(s) 76, 397, 447, 684, 1119, 1284, 1402
AluI AGCT 7 cut(s) 76, 397, 447, 684, 1119, 1284, 1402
AlwI GGATC 3 cut(s) 212, 758, 771
Aor13HI TCCGGA 1 cut(s) 766
AoxI GGCC 6 cut(s) 725, 746, 751, 860, 1059, 1148
ApeKI GCWGC 1 cut(s) 692
ApoI RAATTY 1 cut(s) 480
AsiGI ACCGGT 1 cut(s) 771
Asp718I GGTACC 1 cut(s) 1132
AspLEI GCGC 3 cut(s) 170, 568, 679
AspS9I GGNCC 6 cut(s) 725, 746, 751, 769, 860, 1060
AsuC2I CCSGG 2 cut(s) 525, 750
AsuHPI GGTGA 8 cut(s) 115, 799, 880, 1201, 1261, 1307, 1318, 1330
AvaII GGWCC 1 cut(s) 769
AxyI CCTNAGG 1 cut(s) 864
BamHI GGATCC 1 cut(s) 763
BanI GGYRCC 2 cut(s) 541, 1132
BbvI GCAGC 1 cut(s) 679
BccI CCATC 8 cut(s) 119, 218, 257, 820, 1180, 1246, 1282, 1348
BceAI ACGGC 2 cut(s) 579, 630
BcgI CGANNNNNNTGC 2 cut(s) 685, 719
BciVI GTATCC 2 cut(s) 499, 580
BclI TGATCA 1 cut(s) 1297
BcnI CCSGG 2 cut(s) 525, 750
BfaI CTAG 4 cut(s) 50, 80, 1314, 1382
BfmI CTRYAG 2 cut(s) 303, 1228
BfoI RGCGCY 1 cut(s) 569
BfuI GTATCC 2 cut(s) 499, 580
BisI GCNGC 5 cut(s) 171, 174, 693, 707, 989
BlpI GCTNAGC 2 cut(s) 72, 680
BlsI GCNGC 5 cut(s) 172, 175, 694, 708, 990
Bme1390I CCNGG 2 cut(s) 525, 750
Bme18I GGWCC 1 cut(s) 769
BmeRI GACNNNNNGTC 2 cut(s) 143, 316
BmgT120I GGNCC 6 cut(s) 725, 746, 751, 769, 860, 1060
BmiI GGNNCC 6 cut(s) 543, 630, 669, 765, 1041, 1134
BmrFI CCNGG 2 cut(s) 525, 750
BmsI GCATC 1 cut(s) 198
Bpu1102I GCTNAGC 2 cut(s) 72, 680
BpuEI CTTGAG 1 cut(s) 419
BpuMI CCSGG 2 cut(s) 525, 750
BsaAI YACGTR 2 cut(s) 292, 591
BsaHI GRCGYC 1 cut(s) 474
BsaJI CCNNGG 1 cut(s) 633
BsaWI WCCGGW 3 cut(s) 463, 766, 771
BsaXI ACNNNNNCTCC 8 cut(s) 5, 35, 230, 260, 841, 871, 1106, 1136
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 760
Bse118I RCCGGY 1 cut(s) 771
Bse1I ACTGG 2 cut(s) 241, 555
Bse21I CCTNAGG 1 cut(s) 864
Bse3DI GCAATG 2 cut(s) 920, 1090
BseAI TCCGGA 1 cut(s) 766
BseDI CCNNGG 1 cut(s) 633
BseGI GGATG 3 cut(s) 111, 156, 238
BseLI CCNNNNNNNGG 2 cut(s) 41, 760
BseMI GCAATG 2 cut(s) 920, 1090
BseMII CTCAG 4 cut(s) 86, 434, 501, 878
BseNI ACTGG 2 cut(s) 241, 555
BseRI GAGGAG 2 cut(s) 1274, 1412
BseXI GCAGC 1 cut(s) 679
BseYI CCCAGC 1 cut(s) 899
Bsh1236I CGCG 5 cut(s) 168, 176, 677, 709, 1178
Bsh1285I CGRYCG 1 cut(s) 1074
BshFI GGCC 6 cut(s) 727, 748, 753, 862, 1061, 1150
BshNI GGYRCC 2 cut(s) 541, 1132
BshTI ACCGGT 1 cut(s) 771
BsiEI CGRYCG 1 cut(s) 1074
BsiSI CCGG 6 cut(s) 431, 464, 524, 749, 767, 772
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 2 cut(s) 41, 760
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 6 cut(s) 727, 748, 753, 862, 1061, 1150
Bsp13I TCCGGA 1 cut(s) 766
Bsp143I GATC 6 cut(s) 217, 378, 736, 763, 1071, 1297
Bsp1720I GCTNAGC 2 cut(s) 72, 680
BspANI GGCC 6 cut(s) 727, 748, 753, 862, 1061, 1150
BspCNI CTCAG 4 cut(s) 85, 435, 502, 877
BspEI TCCGGA 1 cut(s) 766
BspFNI CGCG 5 cut(s) 168, 176, 677, 709, 1178
BspLI GGNNCC 6 cut(s) 543, 630, 669, 765, 1041, 1134
BspPI GGATC 3 cut(s) 212, 758, 771
BspT107I GGYRCC 2 cut(s) 541, 1132
BsrDI GCAATG 2 cut(s) 920, 1090
BsrFI RCCGGY 1 cut(s) 771
BsrI ACTGG 2 cut(s) 241, 555
BssAI RCCGGY 1 cut(s) 771
BssECI CCNNGG 1 cut(s) 633
BssMI GATC 6 cut(s) 217, 378, 736, 763, 1071, 1297
BssNI GRCGYC 1 cut(s) 474
BssT1I CCWWGG 1 cut(s) 633
Bst4CI ACNGT 3 cut(s) 145, 596, 1295
Bst6I CTCTTC 1 cut(s) 1331
BstACI GRCGYC 1 cut(s) 474
BstBAI YACGTR 2 cut(s) 292, 591
BstC8I GCNNGC 3 cut(s) 300, 686, 690
BstDEI CTNAG 6 cut(s) 72, 443, 510, 680, 854, 864
BstF5I GGATG 3 cut(s) 111, 156, 238
BstFNI CGCG 5 cut(s) 168, 176, 677, 709, 1178
BstH2I RGCGCY 1 cut(s) 569
BstHHI GCGC 3 cut(s) 170, 568, 679
BstKTI GATC 6 cut(s) 220, 381, 739, 766, 1074, 1300
BstMBI GATC 6 cut(s) 217, 378, 736, 763, 1071, 1297
BstMCI CGRYCG 1 cut(s) 1074
BstNSI RCATGY 3 cut(s) 302, 364, 1014
BstSCI CCNGG 2 cut(s) 523, 748
BstSFI CTRYAG 2 cut(s) 303, 1228
BstSNI TACGTA 1 cut(s) 591
BstUI CGCG 5 cut(s) 168, 176, 677, 709, 1178
BstV1I GCAGC 1 cut(s) 679
BstX2I RGATCY 2 cut(s) 217, 763
BstYI RGATCY 2 cut(s) 217, 763
Bsu36I CCTNAGG 1 cut(s) 864
BsuI GTATCC 2 cut(s) 499, 580
BsuRI GGCC 6 cut(s) 727, 748, 753, 862, 1061, 1150
BtgZI GCGATG 1 cut(s) 235
BtsCI GGATG 3 cut(s) 111, 156, 238
BtsIMutI CAGTG 1 cut(s) 548
Cac8I GCNNGC 3 cut(s) 300, 686, 690
CfoI GCGC 3 cut(s) 170, 568, 679
Cfr10I RCCGGY 1 cut(s) 771
Cfr13I GGNCC 6 cut(s) 725, 746, 751, 769, 860, 1060
CpoI CGGWCCG 1 cut(s) 769
CseI GACGC 2 cut(s) 165, 482
Csp6I GTAC 7 cut(s) 238, 369, 592, 622, 775, 949, 1133
CspAI ACCGGT 1 cut(s) 771
CspCI CAANNNNNGTGG 2 cut(s) 537, 572
CspI CGGWCCG 1 cut(s) 769
CviQI GTAC 7 cut(s) 238, 369, 592, 622, 775, 949, 1133
DdeI CTNAG 6 cut(s) 72, 443, 510, 680, 854, 864
DpnI GATC 6 cut(s) 219, 380, 738, 765, 1073, 1299
DpnII GATC 6 cut(s) 217, 378, 736, 763, 1071, 1297
DriI GACNNNNNGTC 2 cut(s) 143, 316
EaeI YGGCCR 1 cut(s) 1148
Eam1104I CTCTTC 1 cut(s) 1331
Eam1105I GACNNNNNGTC 2 cut(s) 143, 316
EarI CTCTTC 1 cut(s) 1331
EciI GGCGGA 1 cut(s) 1271
Eco105I TACGTA 1 cut(s) 591
Eco130I CCWWGG 1 cut(s) 633
Eco47I GGWCC 1 cut(s) 769
Eco81I CCTNAGG 1 cut(s) 864
EcoT14I CCWWGG 1 cut(s) 633
ErhI CCWWGG 1 cut(s) 633
FaqI GGGAC 1 cut(s) 38
FauI CCCGC 4 cut(s) 173, 973, 1025, 1088
FbaI TGATCA 1 cut(s) 1297
FblI GTMKAC 1 cut(s) 975
Fnu4HI GCNGC 5 cut(s) 171, 174, 693, 707, 989
FokI GGATG 3 cut(s) 98, 143, 245
Fsp4HI GCNGC 5 cut(s) 171, 174, 693, 707, 989
FspBI CTAG 4 cut(s) 50, 80, 1314, 1382
GlaI GCGC 3 cut(s) 169, 567, 678
GluI GCNGC 5 cut(s) 171, 174, 693, 707, 989
GsaI CCCAGC 1 cut(s) 903
HaeII RGCGCY 1 cut(s) 569
HaeIII GGCC 6 cut(s) 727, 748, 753, 862, 1061, 1150
HapII CCGG 6 cut(s) 431, 464, 524, 749, 767, 772
HgaI GACGC 2 cut(s) 165, 482
HhaI GCGC 3 cut(s) 170, 568, 679
Hin1I GRCGYC 1 cut(s) 474
Hin6I GCGC 3 cut(s) 168, 566, 677
HinP1I GCGC 3 cut(s) 168, 566, 677
HincII GTYRAC 3 cut(s) 85, 148, 516
HindII GTYRAC 3 cut(s) 85, 148, 516
HinfI GANTC 7 cut(s) 99, 329, 403, 730, 850, 929, 1054
HpaII CCGG 6 cut(s) 431, 464, 524, 749, 767, 772
HphI GGTGA 8 cut(s) 115, 799, 880, 1201, 1261, 1307, 1318, 1330
Hpy166II GTNNAC 7 cut(s) 85, 148, 358, 516, 715, 949, 976
Hpy188I TCNGA 4 cut(s) 13, 44, 444, 1076
Hpy188III TCNNGA 2 cut(s) 734, 767
Hpy8I GTNNAC 7 cut(s) 85, 148, 358, 516, 715, 949, 976
Hpy99I CGWCG 4 cut(s) 65, 386, 439, 565
HpyAV CCTTC 3 cut(s) 574, 1186, 1379
HpyCH4III ACNGT 3 cut(s) 145, 596, 1295
HpyCH4IV ACGT 7 cut(s) 291, 371, 384, 437, 590, 653, 972
HpyCH4V TGCA 3 cut(s) 227, 1014, 1370
HpyF3I CTNAG 6 cut(s) 72, 443, 510, 680, 854, 864
HpySE526I ACGT 7 cut(s) 291, 371, 384, 437, 590, 653, 972
Hsp92I GRCGYC 1 cut(s) 474
HspAI GCGC 3 cut(s) 168, 566, 677
Kpn2I TCCGGA 1 cut(s) 766
KpnI GGTACC 1 cut(s) 1136
Ksp22I TGATCA 1 cut(s) 1297
Kzo9I GATC 6 cut(s) 217, 378, 736, 763, 1071, 1297
LmnI GCTCC 5 cut(s) 81, 667, 840, 1346, 1399
Lsp1109I GCAGC 1 cut(s) 679
LweI GCATC 1 cut(s) 198
MaeI CTAG 4 cut(s) 50, 80, 1314, 1382
MaeII ACGT 7 cut(s) 291, 371, 384, 437, 590, 653, 972
MalI GATC 6 cut(s) 219, 380, 738, 765, 1073, 1299
MboI GATC 6 cut(s) 217, 378, 736, 763, 1071, 1297
MboII GAAGA 2 cut(s) 1063, 1348
MflI RGATCY 2 cut(s) 217, 763
MluCI AATT 6 cut(s) 480, 662, 1016, 1196, 1243, 1392
MluI ACGCGT 1 cut(s) 1176
MlyI GAGTC 2 cut(s) 338, 859
MroI TCCGGA 1 cut(s) 766
MseI TTAA 2 cut(s) 741, 1391
MslI CAYNNNNRTG 1 cut(s) 125
MspA1I CMGCKG 1 cut(s) 944
MspI CCGG 6 cut(s) 431, 464, 524, 749, 767, 772
MspR9I CCNGG 2 cut(s) 525, 750
MvnI CGCG 5 cut(s) 168, 176, 677, 709, 1178
NciI CCSGG 2 cut(s) 525, 750
NdeII GATC 6 cut(s) 217, 378, 736, 763, 1071, 1297
NlaIV GGNNCC 6 cut(s) 543, 630, 669, 765, 1041, 1134
NmeAIII GCCGAG 1 cut(s) 352
NspI RCATGY 3 cut(s) 302, 364, 1014
PaeI GCATGC 1 cut(s) 302
PciI ACATGT 1 cut(s) 360
PcsI WCGNNNNNNNCGW 2 cut(s) 390, 692
PfeI GAWTC 5 cut(s) 99, 403, 730, 929, 1054
PinAI ACCGGT 1 cut(s) 771
PkrI GCNGC 5 cut(s) 172, 175, 694, 708, 990
Ple19I CGATCG 1 cut(s) 1074
PleI GAGTC 2 cut(s) 337, 858
PpsI GAGTC 2 cut(s) 337, 858
Ppu21I YACGTR 2 cut(s) 292, 591
PscI ACATGT 1 cut(s) 360
PspFI CCCAGC 1 cut(s) 899
PspN4I GGNNCC 6 cut(s) 543, 630, 669, 765, 1041, 1134
PspPI GGNCC 6 cut(s) 725, 746, 751, 769, 860, 1060
PsuI RGATCY 2 cut(s) 217, 763
PvuI CGATCG 1 cut(s) 1074
RsaI GTAC 7 cut(s) 239, 370, 593, 623, 776, 950, 1134
RsaNI GTAC 7 cut(s) 238, 369, 592, 622, 775, 949, 1133
RseI CAYNNNNRTG 1 cut(s) 125
Rsr2I CGGWCCG 1 cut(s) 769
RsrII CGGWCCG 1 cut(s) 769
SaqAI TTAA 2 cut(s) 741, 1391
SatI GCNGC 5 cut(s) 171, 174, 693, 707, 989
Sau3AI GATC 6 cut(s) 217, 378, 736, 763, 1071, 1297
Sau96I GGNCC 6 cut(s) 725, 746, 751, 769, 860, 1060
SchI GAGTC 2 cut(s) 338, 859
ScrFI CCNGG 2 cut(s) 525, 750
SfaNI GCATC 1 cut(s) 198
SfcI CTRYAG 2 cut(s) 303, 1228
SinI GGWCC 1 cut(s) 769
SmiMI CAYNNNNRTG 1 cut(s) 125
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
SnaBI TACGTA 1 cut(s) 591
SphI GCATGC 1 cut(s) 302
Sse9I AATT 6 cut(s) 480, 662, 1016, 1196, 1243, 1392
SspMI CTAG 4 cut(s) 50, 80, 1314, 1382
StyD4I CCNGG 2 cut(s) 523, 748
StyI CCWWGG 1 cut(s) 633
TaaI ACNGT 3 cut(s) 145, 596, 1295
TaiI ACGT 7 cut(s) 294, 374, 387, 440, 593, 656, 975
TaqI TCGA 3 cut(s) 63, 97, 381
TasI AATT 6 cut(s) 480, 662, 1016, 1196, 1243, 1392
TauI GCSGC 4 cut(s) 173, 176, 709, 991
TfiI GAWTC 5 cut(s) 99, 403, 730, 929, 1054
Tru1I TTAA 2 cut(s) 741, 1391
Tru9I TTAA 2 cut(s) 741, 1391
TscAI CASTG 1 cut(s) 555
TseI GCWGC 1 cut(s) 692
TspDTI ATGAA 5 cut(s) 13, 439, 446, 1072, 1187
TspGWI ACGGA 1 cut(s) 1021
TspRI CASTG 1 cut(s) 555
VpaK11BI GGWCC 1 cut(s) 769
XapI RAATTY 1 cut(s) 480
XceI RCATGY 3 cut(s) 302, 364, 1014
XmiI GTMKAC 1 cut(s) 975
XspI CTAG 4 cut(s) 50, 80, 1314, 1382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.