Rorug05G0064700

UDP-glucose flavonoid 3-O-glucosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002688
Physical Location & Seq
Reverse (-)
5595785 .. 5596256
472 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0064700.1

Sequence Viewer

Length: 369 bp
ATGGATGGTTTGAGCAGGATAGCATTTGATGGGGCTTGTGATCAGACCAATGAGGCTCTTGCTCTGTGGCATGGCTTGCGCTATAGTAAGCAACTTGGGGTGCAGCGAGTAGAAATAGTTGGGGATGCTCTCAAGATAATAAATGCCTTATCTTTGAAGGTGATGGATTTGAGTGATATTGGTAGTGTACTAGATGGTGTCAAGAAGTTGATGAAGGAGTTTGAAGTGGTTACCTGGAAGCATGTTCGGAAAAGAGGTAATCAGTTAGCACATGGACTAGTAAGGCGTGCGTTGAGTTTAGTACAAGGATTTTTCTGCAAAGAGGTTGGGCCTCCTTGGCTTTACGACCTTATGAATGTAAACCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

122

Amino Acids

13.65

Weight (kDa)

9.0

Isoelectric Point (pI)

23.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 12 - 97 1.5e-14 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 189, 303
AgsI TTSAA 2 cut(s) 157, 224
AhlI ACTAGT 1 cut(s) 277
AjnI CCWGG 1 cut(s) 233
AoxI GGCC 1 cut(s) 329
ApeKI GCWGC 1 cut(s) 103
AspLEI GCGC 1 cut(s) 81
AspS9I GGNCC 1 cut(s) 329
AsuHPI GGTGA 1 cut(s) 172
BbvI GCAGC 1 cut(s) 115
BccI CCATC 3 cut(s) 23, 157, 188
BciT130I CCWGG 1 cut(s) 235
BclI TGATCA 1 cut(s) 40
BcuI ACTAGT 1 cut(s) 277
BfaI CTAG 2 cut(s) 191, 278
BfmI CTRYAG 1 cut(s) 82
BglI GCCNNNNNGGC 1 cut(s) 337
BisI GCNGC 1 cut(s) 104
BlsI GCNGC 1 cut(s) 105
Bme1390I CCNGG 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 329
BmrFI CCNGG 1 cut(s) 235
BmsI GCATC 1 cut(s) 115
BpuEI CTTGAG 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 335
BseBI CCWGG 1 cut(s) 235
BseDI CCNNGG 1 cut(s) 335
BseGI GGATG 2 cut(s) 10, 130
BseXI GCAGC 1 cut(s) 115
BsgI GTGCAG 1 cut(s) 122
BshFI GGCC 1 cut(s) 331
BsnI GGCC 1 cut(s) 331
Bsp143I GATC 1 cut(s) 40
BspANI GGCC 1 cut(s) 331
BssECI CCNNGG 1 cut(s) 335
BssMI GATC 1 cut(s) 40
BssT1I CCWWGG 1 cut(s) 335
Bst2UI CCWGG 1 cut(s) 235
BstAPI GCANNNNNTGC 1 cut(s) 76
BstC8I GCNNGC 2 cut(s) 77, 288
BstEII GGTNACC 1 cut(s) 229
BstF5I GGATG 2 cut(s) 10, 130
BstHHI GCGC 1 cut(s) 81
BstKTI GATC 1 cut(s) 43
BstMBI GATC 1 cut(s) 40
BstMWI GCNNNNNNNGC 2 cut(s) 76, 337
BstNI CCWGG 1 cut(s) 235
BstNSI RCATGY 1 cut(s) 245
BstPI GGTNACC 1 cut(s) 229
BstSCI CCNGG 1 cut(s) 233
BstSFI CTRYAG 1 cut(s) 82
BstV1I GCAGC 1 cut(s) 115
BsuRI GGCC 1 cut(s) 331
BtsCI GGATG 2 cut(s) 10, 130
Cac8I GCNNGC 2 cut(s) 77, 288
CfoI GCGC 1 cut(s) 81
Cfr13I GGNCC 1 cut(s) 329
Csp6I GTAC 2 cut(s) 188, 302
CviAII CATG 3 cut(s) 71, 242, 272
CviJI RGCY 5 cut(s) 35, 56, 75, 331, 340
CviKI_1 RGCY 5 cut(s) 35, 56, 75, 331, 340
CviQI GTAC 2 cut(s) 188, 302
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
Eco130I CCWWGG 1 cut(s) 335
Eco91I GGTNACC 1 cut(s) 229
EcoO65I GGTNACC 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 233
EcoT14I CCWWGG 1 cut(s) 335
ErhI CCWWGG 1 cut(s) 335
FaeI CATG 3 cut(s) 74, 245, 275
FaiI YATR 5 cut(s) 72, 84, 243, 273, 353
FatI CATG 3 cut(s) 70, 241, 271
FbaI TGATCA 1 cut(s) 40
Fnu4HI GCNGC 1 cut(s) 104
FokI GGATG 2 cut(s) 17, 137
Fsp4HI GCNGC 1 cut(s) 104
FspBI CTAG 2 cut(s) 191, 278
GlaI GCGC 1 cut(s) 80
GluI GCNGC 1 cut(s) 104
HaeIII GGCC 1 cut(s) 331
HhaI GCGC 1 cut(s) 81
Hin1II CATG 3 cut(s) 74, 245, 275
Hin6I GCGC 1 cut(s) 79
HinP1I GCGC 1 cut(s) 79
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 2 cut(s) 188, 361
Hpy188I TCNGA 2 cut(s) 45, 249
Hpy188III TCNNGA 2 cut(s) 133, 202
Hpy8I GTNNAC 2 cut(s) 188, 361
HpyAV CCTTC 2 cut(s) 151, 208
HpyCH4V TGCA 2 cut(s) 103, 318
HpyF10VI GCNNNNNNNGC 2 cut(s) 76, 337
Hsp92II CATG 3 cut(s) 74, 245, 275
HspAI GCGC 1 cut(s) 79
Ksp22I TGATCA 1 cut(s) 40
Kzo9I GATC 1 cut(s) 40
LpnPI CCDG 2 cut(s) 220, 247
Lsp1109I GCAGC 1 cut(s) 115
LweI GCATC 1 cut(s) 115
MaeI CTAG 2 cut(s) 191, 278
MaeIII GTNAC 1 cut(s) 229
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MnlI CCTC 4 cut(s) 46, 248, 316, 342
MspR9I CCNGG 1 cut(s) 235
MvaI CCWGG 1 cut(s) 235
MwoI GCNNNNNNNGC 2 cut(s) 76, 337
NdeII GATC 1 cut(s) 40
NlaIII CATG 3 cut(s) 74, 245, 275
NspI RCATGY 1 cut(s) 245
PkrI GCNGC 1 cut(s) 105
Psp6I CCWGG 1 cut(s) 233
PspEI GGTNACC 1 cut(s) 229
PspGI CCWGG 1 cut(s) 233
PspPI GGNCC 1 cut(s) 329
RsaI GTAC 2 cut(s) 189, 303
RsaNI GTAC 2 cut(s) 188, 302
SatI GCNGC 1 cut(s) 104
Sau3AI GATC 1 cut(s) 40
Sau96I GGNCC 1 cut(s) 329
ScrFI CCNGG 1 cut(s) 235
SetI ASST 5 cut(s) 162, 236, 259, 327, 351
SfaNI GCATC 1 cut(s) 115
SfcI CTRYAG 1 cut(s) 82
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
SpeI ACTAGT 1 cut(s) 277
SspMI CTAG 2 cut(s) 191, 278
StyD4I CCNGG 1 cut(s) 233
StyI CCWWGG 1 cut(s) 335
TatI WGTACW 2 cut(s) 187, 301
TseI GCWGC 1 cut(s) 103
TspDTI ATGAA 2 cut(s) 227, 368
XceI RCATGY 1 cut(s) 245
XspI CTAG 2 cut(s) 191, 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.