Rh5DG153100

UDP-glucose flavonoid 3-O-glucosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0002688
Physical Location & Seq
Forward (+)
15558203 .. 15560150
1948 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG153100.1

Sequence Viewer

Length: 1422 bp
ATGAGCAAATCGGAGGTGGTGTTCATCTCAACCCCCGGATCAATCGGAAACCTAGTCCCACTGGTCGAGTTCGCTCAGCTTCTAGTCAACCATGACCCTCGATTCCACGCCAGCATCCTCACCATCACCATGCCCCAAAGACCCACCATCGATACTTACATCCAGTCCCGCGCCGCCGCGTCAGCCACCAGCATCAACTTCCTCCACCTCCCCATTGTAGAACCACTTGCAGGGGATGAGAACCAGTCCTATCTCGCCTACCTTTCCCTACTCATTGAAAAACACAAGCCCCACGTAAAGCATGCTATAGCCGACCTCATGTCCTCTGCCGAGTCAAACCGAGTTGTTGCGTTTTTCGTGGACATGTTTTGTACGTCCATGATCGACGTTGCCAACGAGCTTGAGATTCCTTGTTATATGTATTTCGCTTCTCCGGCGACGTTTCTGAGCTTCATGTTTCATATTCCTGTCTTGGACGCCGAAATCTCCGACGACTTTGGCGATTTGGATACTGAGTTGACTATACCGGGTTTTGCTAACTCGGTGTCTCCGCTGGTGTTGCCTACGGCGCTGTTGAGTAAGAAGGGGGATACGTACCCTTGCTATTTGTCCCATACGGCAAGGTACAAGGAACCCAAGGGTATTGTCGTCAATACGTTCAAGGAATTGGAGCCACACGCGCTTAGCTCGTTGTCTACGAGTCACGGGCCGCGAGTTCACGCTATTGGGCCGGTTGTTGATCTTAATGGGCCGGCCCAATGGCAGGATCCCGACCTGTACGAGAGCGTGGTGAAGTGGCTCGATGACCAGCCTCCGTCGTCTGTGGTGCTGTTGTGCTTTGGGAGCATGGGGAGTCTTAGTGGGCCTCAGGTGAGGGAGATAGCATTTGGGCTGGAAAGGGCTGGGTTTCGGTTCTTATGGGCATTGCGAGAACCGCCCAAGTCCAGTGTATACCTTCCGAGCGACCCCGCAAACGTAGACGAGGTATTGCCGGATGGGTTTTTGGAGCGGACTTGTAAATTCGGTTTAGTGTGCGGGTGGGTCCCTCAAGTGAAGATTCTGGCCCACCAAGCGATCGGAGGGTTCGTATCGCATTGCGGGTGGAACTCGATTTTGGAGAGCTTGTGGTATGGGGTACCGATTGCCACGTGGCCTATTTACTCGGAGCAACAAATGAACGCGTTTGAGATGGTGAAGGAATTGGGATTGGCAGTGGAGATTAGGCTGGACTATAGGGAGGGAAGTGATTTGGTGTTGGCGGGGGAGGTGGAGAGAAGCATAAAGAGCTTGATGGAGGGTGATCATGTGGTGAGGGCTAGGGTGAAGGACATGAGAGAGAAGAGCAGGATGGCATTGATGGAAAATGGGTCTGCATACAAAGCACTAGAAGGTTTAATTGAGGAACTAATGCCCAAGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

473

Amino Acids

52.37

Weight (kDa)

5.12

Isoelectric Point (pI)

37.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 273 - 410 2e-20 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1135
AccB1I GGYRCC 1 cut(s) 1135
AccBSI CCGCTC 1 cut(s) 1009
AccI GTMKAC 3 cut(s) 695, 951, 978
AccII CGCG 5 cut(s) 171, 179, 680, 712, 1181
AclWI GGATC 3 cut(s) 46, 761, 774
AcsI RAATTY 1 cut(s) 1019
AcvI CACGTG 1 cut(s) 1149
AcyI GRCGYC 1 cut(s) 477
AfaI GTAC 5 cut(s) 373, 596, 626, 779, 1137
AfiI CCNNNNNNNGG 2 cut(s) 230, 763
AflIII ACRYGT 2 cut(s) 363, 1179
AgsI TTSAA 2 cut(s) 278, 661
AhdI GACNNNNNGTC 1 cut(s) 319
AjuI GAANNNNNNNTTGG 2 cut(s) 1097, 1129
AloI GAACNNNNNNTCC 1 cut(s) 37
AluBI AGCT 6 cut(s) 79, 400, 450, 687, 1122, 1287
AluI AGCT 6 cut(s) 79, 400, 450, 687, 1122, 1287
Alw26I GTCTC 1 cut(s) 552
AlwI GGATC 3 cut(s) 46, 761, 774
AoxI GGCC 7 cut(s) 707, 728, 749, 753, 863, 1062, 1151
ApoI RAATTY 1 cut(s) 1019
Asp718I GGTACC 1 cut(s) 1135
AspLEI GCGC 3 cut(s) 173, 571, 682
AspS9I GGNCC 7 cut(s) 707, 728, 749, 754, 863, 1042, 1063
AsuC2I CCSGG 2 cut(s) 36, 528
AsuHPI GGTGA 8 cut(s) 112, 118, 802, 883, 1204, 1310, 1321, 1333
AvaII GGWCC 1 cut(s) 1042
AxyI CCTNAGG 1 cut(s) 867
BamHI GGATCC 1 cut(s) 766
BanI GGYRCC 1 cut(s) 1135
BbrPI CACGTG 1 cut(s) 1149
BccI CCATC 7 cut(s) 131, 155, 989, 1183, 1285, 1342, 1351
BceAI ACGGC 2 cut(s) 582, 633
BciVI GTATCC 2 cut(s) 502, 583
BclI TGATCA 1 cut(s) 1300
BcnI CCSGG 2 cut(s) 36, 528
BcoDI GTCTC 1 cut(s) 552
BfaI CTAG 4 cut(s) 53, 83, 1317, 1385
BfmI CTRYAG 2 cut(s) 306, 1231
BfoI RGCGCY 1 cut(s) 572
BfuI GTATCC 2 cut(s) 502, 583
BglII AGATCT 1 cut(s) 1416
BisI GCNGC 3 cut(s) 174, 177, 710
BlpI GCTNAGC 2 cut(s) 75, 683
BlsI GCNGC 3 cut(s) 175, 178, 711
Bme1390I CCNGG 2 cut(s) 36, 528
Bme18I GGWCC 1 cut(s) 1042
BmeRI GACNNNNNGTC 1 cut(s) 319
BmgT120I GGNCC 7 cut(s) 707, 728, 749, 754, 863, 1042, 1063
BmiI GGNNCC 6 cut(s) 633, 672, 768, 1043, 1044, 1137
BmrFI CCNGG 2 cut(s) 36, 528
BmsI GCATC 2 cut(s) 123, 201
Bpu1102I GCTNAGC 2 cut(s) 75, 683
BpuEI CTTGAG 2 cut(s) 422, 1032
BpuMI CCSGG 2 cut(s) 36, 528
Bsa29I ATCGAT 1 cut(s) 150
BsaAI YACGTR 3 cut(s) 295, 594, 1149
BsaHI GRCGYC 1 cut(s) 477
BsaJI CCNNGG 2 cut(s) 34, 636
BsaXI ACNNNNNCTCC 8 cut(s) 5, 35, 844, 874, 1071, 1101, 1109, 1139
Bsc4I CCNNNNNNNGG 2 cut(s) 230, 763
Bse118I RCCGGY 2 cut(s) 730, 751
Bse1I ACTGG 4 cut(s) 66, 163, 244, 945
Bse21I CCTNAGG 1 cut(s) 867
Bse3DI GCAATG 2 cut(s) 923, 1093
BseCI ATCGAT 1 cut(s) 150
BseDI CCNNGG 2 cut(s) 34, 636
BseGI GGATG 5 cut(s) 114, 159, 241, 1000, 1353
BseLI CCNNNNNNNGG 2 cut(s) 230, 763
BseMI GCAATG 2 cut(s) 923, 1093
BseMII CTCAG 4 cut(s) 89, 437, 504, 881
BseNI ACTGG 4 cut(s) 66, 163, 244, 945
BseYI CCCAGC 1 cut(s) 902
Bsh1236I CGCG 5 cut(s) 171, 179, 680, 712, 1181
Bsh1285I CGRYCG 1 cut(s) 1077
BshFI GGCC 7 cut(s) 709, 730, 751, 755, 865, 1064, 1153
BshNI GGYRCC 1 cut(s) 1135
BshVI ATCGAT 1 cut(s) 150
BsiEI CGRYCG 1 cut(s) 1077
BsiSI CCGG 6 cut(s) 36, 434, 527, 731, 752, 992
BslFI GGGAC 4 cut(s) 41, 151, 595, 1028
BslI CCNNNNNNNGG 2 cut(s) 230, 763
BsmAI GTCTC 1 cut(s) 552
BsmFI GGGAC 4 cut(s) 41, 151, 595, 1028
BsnI GGCC 7 cut(s) 709, 730, 751, 755, 865, 1064, 1153
Bsp143I GATC 7 cut(s) 38, 381, 739, 766, 1074, 1300, 1416
Bsp1720I GCTNAGC 2 cut(s) 75, 683
BspANI GGCC 7 cut(s) 709, 730, 751, 755, 865, 1064, 1153
BspCNI CTCAG 4 cut(s) 88, 438, 505, 880
BspDI ATCGAT 1 cut(s) 150
BspFNI CGCG 5 cut(s) 171, 179, 680, 712, 1181
BspLI GGNNCC 6 cut(s) 633, 672, 768, 1043, 1044, 1137
BspPI GGATC 3 cut(s) 46, 761, 774
BspQI GCTCTTC 1 cut(s) 1334
BspT107I GGYRCC 1 cut(s) 1135
BsrBI CCGCTC 1 cut(s) 1009
BsrDI GCAATG 2 cut(s) 923, 1093
BsrFI RCCGGY 2 cut(s) 730, 751
BsrI ACTGG 4 cut(s) 66, 163, 244, 945
BssAI RCCGGY 2 cut(s) 730, 751
BssECI CCNNGG 2 cut(s) 34, 636
BssMI GATC 7 cut(s) 38, 381, 739, 766, 1074, 1300, 1416
BssNAI GTATAC 1 cut(s) 952
BssNI GRCGYC 1 cut(s) 477
BssT1I CCWWGG 1 cut(s) 636
Bst1107I GTATAC 1 cut(s) 952
Bst6I CTCTTC 1 cut(s) 1334
BstACI GRCGYC 1 cut(s) 477
BstBAI YACGTR 3 cut(s) 295, 594, 1149
BstC8I GCNNGC 3 cut(s) 112, 303, 753
BstDEI CTNAG 6 cut(s) 75, 446, 513, 683, 857, 867
BstF5I GGATG 5 cut(s) 114, 159, 241, 1000, 1353
BstFNI CGCG 5 cut(s) 171, 179, 680, 712, 1181
BstH2I RGCGCY 1 cut(s) 572
BstHHI GCGC 3 cut(s) 173, 571, 682
BstKTI GATC 7 cut(s) 41, 384, 742, 769, 1077, 1303, 1419
BstMAI GTCTC 1 cut(s) 552
BstMBI GATC 7 cut(s) 38, 381, 739, 766, 1074, 1300, 1416
BstMCI CGRYCG 1 cut(s) 1077
BstNSI RCATGY 2 cut(s) 305, 367
BstSCI CCNGG 2 cut(s) 34, 526
BstSFI CTRYAG 2 cut(s) 306, 1231
BstSNI TACGTA 1 cut(s) 594
BstUI CGCG 5 cut(s) 171, 179, 680, 712, 1181
BstX2I RGATCY 2 cut(s) 766, 1416
BstYI RGATCY 2 cut(s) 766, 1416
BstZ17I GTATAC 1 cut(s) 952
Bsu15I ATCGAT 1 cut(s) 150
Bsu36I CCTNAGG 1 cut(s) 867
BsuI GTATCC 2 cut(s) 502, 583
BsuRI GGCC 7 cut(s) 709, 730, 751, 755, 865, 1064, 1153
BsuTUI ATCGAT 1 cut(s) 150
BtsCI GGATG 5 cut(s) 114, 159, 241, 1000, 1353
BtsI GCAGTG 1 cut(s) 1218
BtsIMutI CAGTG 3 cut(s) 59, 952, 1218
Cac8I GCNNGC 3 cut(s) 112, 303, 753
CfoI GCGC 3 cut(s) 173, 571, 682
Cfr10I RCCGGY 2 cut(s) 730, 751
Cfr13I GGNCC 7 cut(s) 707, 728, 749, 754, 863, 1042, 1063
ClaI ATCGAT 1 cut(s) 150
CseI GACGC 2 cut(s) 168, 485
Csp6I GTAC 5 cut(s) 372, 595, 625, 778, 1136
CviQI GTAC 5 cut(s) 372, 595, 625, 778, 1136
DdeI CTNAG 6 cut(s) 75, 446, 513, 683, 857, 867
DpnI GATC 7 cut(s) 40, 383, 741, 768, 1076, 1302, 1418
DpnII GATC 7 cut(s) 38, 381, 739, 766, 1074, 1300, 1416
DriI GACNNNNNGTC 1 cut(s) 319
Eam1104I CTCTTC 1 cut(s) 1334
Eam1105I GACNNNNNGTC 1 cut(s) 319
EarI CTCTTC 1 cut(s) 1334
Eco105I TACGTA 1 cut(s) 594
Eco130I CCWWGG 1 cut(s) 636
Eco47I GGWCC 1 cut(s) 1042
Eco72I CACGTG 1 cut(s) 1149
Eco81I CCTNAGG 1 cut(s) 867
EcoO109I RGGNCCY 1 cut(s) 1042
EcoT14I CCWWGG 1 cut(s) 636
ErhI CCWWGG 1 cut(s) 636
FaqI GGGAC 4 cut(s) 41, 151, 595, 1028
FauI CCCGC 5 cut(s) 176, 976, 1028, 1091, 1252
FbaI TGATCA 1 cut(s) 1300
FblI GTMKAC 3 cut(s) 695, 951, 978
Fnu4HI GCNGC 3 cut(s) 174, 177, 710
FokI GGATG 5 cut(s) 101, 146, 248, 1007, 1360
FseI GGCCGGCC 1 cut(s) 755
Fsp4HI GCNGC 3 cut(s) 174, 177, 710
FspBI CTAG 4 cut(s) 53, 83, 1317, 1385
GlaI GCGC 3 cut(s) 172, 570, 681
GluI GCNGC 3 cut(s) 174, 177, 710
GsaI CCCAGC 1 cut(s) 906
HaeII RGCGCY 1 cut(s) 572
HaeIII GGCC 7 cut(s) 709, 730, 751, 755, 865, 1064, 1153
HapII CCGG 6 cut(s) 36, 434, 527, 731, 752, 992
HgaI GACGC 2 cut(s) 168, 485
HhaI GCGC 3 cut(s) 173, 571, 682
Hin1I GRCGYC 1 cut(s) 477
Hin6I GCGC 3 cut(s) 171, 569, 680
HinP1I GCGC 3 cut(s) 171, 569, 680
HincII GTYRAC 2 cut(s) 88, 519
HindII GTYRAC 2 cut(s) 88, 519
HinfI GANTC 6 cut(s) 102, 332, 406, 700, 853, 1057
HpaII CCGG 6 cut(s) 36, 434, 527, 731, 752, 992
HphI GGTGA 8 cut(s) 112, 118, 802, 883, 1204, 1310, 1321, 1333
Hpy166II GTNNAC 7 cut(s) 88, 361, 519, 696, 718, 952, 979
Hpy188I TCNGA 8 cut(s) 13, 47, 447, 490, 960, 1079, 1165, 1421
Hpy188III TCNNGA 1 cut(s) 770
Hpy8I GTNNAC 7 cut(s) 88, 361, 519, 696, 718, 952, 979
Hpy99I CGWCG 4 cut(s) 389, 442, 494, 820
HpyAV CCTTC 5 cut(s) 577, 965, 1189, 1318, 1382
HpyCH4IV ACGT 8 cut(s) 294, 374, 387, 440, 593, 656, 975, 1148
HpyCH4V TGCA 2 cut(s) 230, 1373
HpyF3I CTNAG 6 cut(s) 75, 446, 513, 683, 857, 867
HpySE526I ACGT 8 cut(s) 294, 374, 387, 440, 593, 656, 975, 1148
Hsp92I GRCGYC 1 cut(s) 477
HspAI GCGC 3 cut(s) 171, 569, 680
KflI GGGWCCC 1 cut(s) 1042
KpnI GGTACC 1 cut(s) 1139
KroI GCCGGC 1 cut(s) 751
KroNI GCCGGC 1 cut(s) 753
Ksp22I TGATCA 1 cut(s) 1300
Kzo9I GATC 7 cut(s) 38, 381, 739, 766, 1074, 1300, 1416
LguI GCTCTTC 1 cut(s) 1334
LmnI GCTCC 4 cut(s) 670, 843, 1006, 1165
LweI GCATC 2 cut(s) 123, 201
MaeI CTAG 4 cut(s) 53, 83, 1317, 1385
MaeII ACGT 8 cut(s) 294, 374, 387, 440, 593, 656, 975, 1148
MaeIII GTNAC 1 cut(s) 701
MalI GATC 7 cut(s) 40, 383, 741, 768, 1076, 1302, 1418
MbiI CCGCTC 1 cut(s) 1009
MboI GATC 7 cut(s) 38, 381, 739, 766, 1074, 1300, 1416
MboII GAAGA 2 cut(s) 1066, 1351
MflI RGATCY 2 cut(s) 766, 1416
MluCI AATT 4 cut(s) 665, 1019, 1199, 1395
MluI ACGCGT 1 cut(s) 1179
MlyI GAGTC 3 cut(s) 341, 709, 862
MmeI TCCRAC 1 cut(s) 513
MroNI GCCGGC 1 cut(s) 751
MseI TTAA 2 cut(s) 744, 1394
MslI CAYNNNNRTG 1 cut(s) 128
MspA1I CMGCKG 1 cut(s) 553
MspI CCGG 6 cut(s) 36, 434, 527, 731, 752, 992
MspR9I CCNGG 2 cut(s) 36, 528
MvnI CGCG 5 cut(s) 171, 179, 680, 712, 1181
NaeI GCCGGC 1 cut(s) 753
NciI CCSGG 2 cut(s) 36, 528
NdeII GATC 7 cut(s) 38, 381, 739, 766, 1074, 1300, 1416
NgoMIV GCCGGC 1 cut(s) 751
NlaIV GGNNCC 6 cut(s) 633, 672, 768, 1043, 1044, 1137
NmeAIII GCCGAG 1 cut(s) 355
NmuCI GTSAC 1 cut(s) 701
NspI RCATGY 2 cut(s) 305, 367
PaeI GCATGC 1 cut(s) 305
PciI ACATGT 1 cut(s) 363
PciSI GCTCTTC 1 cut(s) 1334
PcsI WCGNNNNNNNCGW 4 cut(s) 393, 498, 695, 1083
PdiI GCCGGC 1 cut(s) 753
PfeI GAWTC 3 cut(s) 102, 406, 1057
PkrI GCNGC 3 cut(s) 175, 178, 711
Ple19I CGATCG 1 cut(s) 1077
PleI GAGTC 3 cut(s) 340, 708, 861
PmaCI CACGTG 1 cut(s) 1149
PmlI CACGTG 1 cut(s) 1149
PpsI GAGTC 3 cut(s) 340, 708, 861
Ppu21I YACGTR 3 cut(s) 295, 594, 1149
PpuMI RGGWCCY 1 cut(s) 1042
PscI ACATGT 1 cut(s) 363
Psp5II RGGWCCY 1 cut(s) 1042
PspCI CACGTG 1 cut(s) 1149
PspFI CCCAGC 1 cut(s) 902
PspN4I GGNNCC 6 cut(s) 633, 672, 768, 1043, 1044, 1137
PspPI GGNCC 7 cut(s) 707, 728, 749, 754, 863, 1042, 1063
PspPPI RGGWCCY 1 cut(s) 1042
PsuI RGATCY 2 cut(s) 766, 1416
PvuI CGATCG 1 cut(s) 1077
RigI GGCCGGCC 1 cut(s) 755
RsaI GTAC 5 cut(s) 373, 596, 626, 779, 1137
RsaNI GTAC 5 cut(s) 372, 595, 625, 778, 1136
RseI CAYNNNNRTG 1 cut(s) 128
SapI GCTCTTC 1 cut(s) 1334
SaqAI TTAA 2 cut(s) 744, 1394
SatI GCNGC 3 cut(s) 174, 177, 710
Sau3AI GATC 7 cut(s) 38, 381, 739, 766, 1074, 1300, 1416
Sau96I GGNCC 7 cut(s) 707, 728, 749, 754, 863, 1042, 1063
SchI GAGTC 3 cut(s) 341, 709, 862
ScrFI CCNGG 2 cut(s) 36, 528
SfaNI GCATC 2 cut(s) 123, 201
SfcI CTRYAG 2 cut(s) 306, 1231
SinI GGWCC 1 cut(s) 1042
SmiMI CAYNNNNRTG 1 cut(s) 128
SmlI CTYRAG 2 cut(s) 401, 1047
SmoI CTYRAG 2 cut(s) 401, 1047
SnaBI TACGTA 1 cut(s) 594
SphI GCATGC 1 cut(s) 305
Sse9I AATT 4 cut(s) 665, 1019, 1199, 1395
SspMI CTAG 4 cut(s) 53, 83, 1317, 1385
StyD4I CCNGG 2 cut(s) 34, 526
StyI CCWWGG 1 cut(s) 636
TaiI ACGT 8 cut(s) 297, 377, 390, 443, 596, 659, 978, 1151
TaqI TCGA 6 cut(s) 66, 100, 150, 384, 801, 1109
TasI AATT 4 cut(s) 665, 1019, 1199, 1395
TauI GCSGC 3 cut(s) 176, 179, 712
TfiI GAWTC 3 cut(s) 102, 406, 1057
Tru1I TTAA 2 cut(s) 744, 1394
Tru9I TTAA 2 cut(s) 744, 1394
TscAI CASTG 3 cut(s) 66, 952, 1218
TseFI GTSAC 1 cut(s) 701
Tsp45I GTSAC 1 cut(s) 701
TspDTI ATGAA 4 cut(s) 13, 442, 449, 1190
TspGWI ACGGA 1 cut(s) 804
TspRI CASTG 3 cut(s) 66, 952, 1218
VpaK11BI GGWCC 1 cut(s) 1042
XapI RAATTY 1 cut(s) 1019
XceI RCATGY 2 cut(s) 305, 367
XmiI GTMKAC 3 cut(s) 695, 951, 978
XspI CTAG 4 cut(s) 53, 83, 1317, 1385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.