Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002688

Physical Location & Seq

Genomic Coordinates Reverse (-)

16806723 .. 16810541

Gene Structure 3819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032587

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGCATTTCCAGCTTATAAGGCTTTTGAGGTTGCTGCGGTGACATGCTATGATAGTTACTTTTCCATTTGCCCATTTGTTGATTACATCCCATGGCATGTGTTTGCAAATAATGAGGTACTGAAAGAAGCAATAAAGGAGTGTGGTTTAGTGAGCAGAAGAGGTTTGTGGTTTCAGAAGAATAGTAAACAGAAGATTGAGGTTAAGTATCAGCTTTCTTGCCTTGTTTGGCTCTATGCAAGCAACATTGCAGAGCTTGGCCCTTCCACTCTTGTCATAAAGACACTGAAGGATGAGCATAACTGTGCCCAACTTATACATAGTCATCACCTAGCTTACCTTAGAGTAGCCAAGGAGGTTCAAGAAGACTTATTGGTGGATGAAGATTGGTCTAGAAAAGGGATTCAAAACCATATCCAGAAGAAGTTCAACTTGGATATAGAGGAGCTAAATAGACATAAGGTGAAGAAGGAGAAAGATGCTTATGGTTTAGAGATAGAGGAGGCAGTGTCTTCTAAAAAGAAAAAAAGAAAGATAGAGGATGAGCGTATCGTAGACTACTATGCAAAGTGGAGGGGCATGCATATTACCTACACGCATTATGATCCTAATCCTAGTAGAAAAGGAGATGGGTATTTTTGGTTTTTGCATCATACAAATTGGTATAGAGAAACATATTACCTAAATGGTATTATCGTATATACGTCTGACGAACTTGAACCCCATGCCCTTAATGTTGTTTCTGATGGTCGAGGTCGGCCGGTTTATCCGATTGGACCAGTCGTTGATATCACTGGACCGGATGACTGGTATTCTGAGAAGGTTAGCTGTGGTAGCATCACGAAATGGGTGGATAATCAACCTTCATCTTCTGTGGTATTTCTGTGCTTTGGAAGCATAGAAAGTCTTATCGGACCTCAAGTGAGAGAGGTTGCACTTGGGCTTGAACAGCCGAGGCTCGTTTCTTGTGGTCCTTGCTTGAGCCGCCCAAGGCATTGGGCCTTTCGAGCATGTACATGGATCTGGCGGTTGATGGGCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

348

Amino Acids

40.25

Weight (kDa)

7.59

Isoelectric Point (pI)

48.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02620 FvH4_2g02630 FvH4_3g12970 FvH4_3g12970 FvH4_3g17180 FvH4_3g17181
malus_domestica	MD05G1246700.v1.1
prunus_persica	Prupe.4G117900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0153371 RchiOBHm_Chr5g0021081 RchiOBHm_Chr5g0021091 RchiOBHm_Chr5g0021101
rosa_laevigata	RLG00000032582 RLG00000032583 RLG00000032584 RLG00000032587
rosa_multiflora	Rmu_co7967648.1_g000001 Rmu_co8022450.1_g000001 Rmu_co8209284.1_g000001 Rmu_co8295101.1_g000001 Rmu_sc0002467.1_g000005 Rmu_sc0041861.1_g000001 Rmu_ssc0000244.1_g000020 Rmu_ssc0000244.1_g000027 Rmu_ssc0000244.1_g000028
rosa_roxburghii	Rroxscaffold_1G00057340 Rroxscaffold_1G00057380
rosa_rugosa	Rorug05G0064300 Rorug05G0064400 Rorug05G0064500 Rorug05G0064700
rosa_samantha	Rh2AG501400 Rh5CG166400 Rh5CG166500 Rh5CG166600 Rh5DG153100 Rh5DG153300 Rh5DG153400
rosa_wichuraiana	Rw5G013670 Rw5G013680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	18
AccI	GTMKAC	1 cut(s)	555
AciI	CCGC	3 cut(s)	38, 985, 1027
AclWI	GGATC	2 cut(s)	599, 1028
AcoI	YGGCCR	1 cut(s)	758
AcuI	CTGAAG	1 cut(s)	308
AfaI	GTAC	2 cut(s)	120, 1015
AgsI	TTSAA	5 cut(s)	362, 407, 430, 719, 947
AjuI	GAANNNNNNNTTGG	2 cut(s)	416, 448
AluBI	AGCT	6 cut(s)	14, 214, 256, 335, 448, 828
AluI	AGCT	6 cut(s)	14, 214, 256, 335, 448, 828
AlwI	GGATC	2 cut(s)	599, 1028
AoxI	GGCC	3 cut(s)	259, 758, 999
ApeKI	GCWGC	1 cut(s)	35
Asp700I	GAANNNNTTC	1 cut(s)	425
AspS9I	GGNCC	6 cut(s)	260, 776, 797, 914, 971, 999
AsuHPI	GGTGA	3 cut(s)	52, 320, 475
AvaII	GGWCC	4 cut(s)	776, 797, 914, 971
BaeGI	GKGCMC	1 cut(s)	310
BanII	GRGCYC	1 cut(s)	1040
BbsI	GAAGAC	2 cut(s)	372, 504
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	3 cut(s)	623, 740, 1027
BfaI	CTAG	3 cut(s)	332, 393, 615
BisI	GCNGC	2 cut(s)	36, 985
BlsI	GCNGC	2 cut(s)	37, 986
Bme18I	GGWCC	4 cut(s)	776, 797, 914, 971
BmgT120I	GGNCC	6 cut(s)	260, 776, 797, 914, 971, 999
BmsI	GCATC	3 cut(s)	469, 658, 846
BpiI	GAAGAC	2 cut(s)	372, 504
BpuEI	CTTGAG	2 cut(s)	903, 1000
BsaBI	GATNNNNATC	1 cut(s)	609
BsaJI	CCNNGG	4 cut(s)	92, 351, 953, 989
BsaWI	WCCGGW	1 cut(s)	799
BsaXI	ACNNNNNCTCC	2 cut(s)	494, 524
Bse118I	RCCGGY	1 cut(s)	760
Bse1I	ACTGG	3 cut(s)	779, 799, 812
Bse3DI	GCAATG	1 cut(s)	246
Bse8I	GATNNNNATC	1 cut(s)	609
BseDI	CCNNGG	4 cut(s)	92, 351, 953, 989
BseGI	GGATG	5 cut(s)	87, 298, 385, 547, 808
BseJI	GATNNNNATC	1 cut(s)	609
BseMI	GCAATG	1 cut(s)	246
BseMII	CTCAG	1 cut(s)	807
BseNI	ACTGG	3 cut(s)	779, 799, 812
BseRI	GAGGAG	2 cut(s)	458, 515
BseSI	GKGCMC	1 cut(s)	310
BseX3I	CGGCCG	1 cut(s)	758
BseXI	GCAGC	1 cut(s)	22
Bsh1285I	CGRYCG	1 cut(s)	761
BshFI	GGCC	3 cut(s)	261, 760, 1001
BsiEI	CGRYCG	1 cut(s)	761
BsiSI	CCGG	2 cut(s)	761, 800
BsnI	GGCC	3 cut(s)	261, 760, 1001
Bsp1286I	GDGCHC	2 cut(s)	310, 1040
Bsp1407I	TGTACA	1 cut(s)	1013
Bsp143I	GATC	2 cut(s)	604, 1020
Bsp19I	CCATGG	1 cut(s)	92
BspACI	CCGC	3 cut(s)	38, 985, 1027
BspANI	GGCC	3 cut(s)	261, 760, 1001
BspCNI	CTCAG	1 cut(s)	808
BspPI	GGATC	2 cut(s)	599, 1028
BsrDI	GCAATG	1 cut(s)	246
BsrFI	RCCGGY	1 cut(s)	760
BsrGI	TGTACA	1 cut(s)	1013
BsrI	ACTGG	3 cut(s)	779, 799, 812
BssAI	RCCGGY	1 cut(s)	760
BssECI	CCNNGG	4 cut(s)	92, 351, 953, 989
BssMI	GATC	2 cut(s)	604, 1020
BssT1I	CCWWGG	3 cut(s)	92, 351, 989
Bst4CI	ACNGT	1 cut(s)	305
Bst6I	CTCTTC	1 cut(s)	154
BstAUI	TGTACA	1 cut(s)	1013
BstC8I	GCNNGC	2 cut(s)	241, 581
BstDEI	CTNAG	3 cut(s)	341, 816, 1041
BstDSI	CCRYGG	1 cut(s)	92
BstF5I	GGATG	5 cut(s)	87, 298, 385, 547, 808
BstKTI	GATC	2 cut(s)	607, 1023
BstMBI	GATC	2 cut(s)	604, 1020
BstMCI	CGRYCG	1 cut(s)	761
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 20, 834, 894, 949, 984, 1007
BstNSI	RCATGY	4 cut(s)	48, 101, 583, 1014
BstSLI	GKGCMC	1 cut(s)	310
BstV1I	GCAGC	1 cut(s)	22
BstV2I	GAAGAC	2 cut(s)	372, 504
BstX2I	RGATCY	1 cut(s)	1020
BstXI	CCANNNNNNTGG	1 cut(s)	996
BstYI	RGATCY	1 cut(s)	1020
BstZI	CGGCCG	1 cut(s)	758
BsuRI	GGCC	3 cut(s)	261, 760, 1001
BtgI	CCRYGG	1 cut(s)	92
BtsCI	GGATG	5 cut(s)	87, 298, 385, 547, 808
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	3 cut(s)	284, 513, 792
Cac8I	GCNNGC	2 cut(s)	241, 581
Cfr10I	RCCGGY	1 cut(s)	760
Cfr13I	GGNCC	6 cut(s)	260, 776, 797, 914, 971, 999
Csp6I	GTAC	2 cut(s)	119, 1014
CviAII	CATG	7 cut(s)	45, 93, 98, 580, 725, 1011, 1017
CviQI	GTAC	2 cut(s)	119, 1014
DdeI	CTNAG	3 cut(s)	341, 816, 1041
DpnI	GATC	2 cut(s)	606, 1022
DpnII	GATC	2 cut(s)	604, 1020
EaeI	YGGCCR	1 cut(s)	758
EagI	CGGCCG	1 cut(s)	758
Eam1104I	CTCTTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	154
EclXI	CGGCCG	1 cut(s)	758
Eco130I	CCWWGG	3 cut(s)	92, 351, 989
Eco24I	GRGCYC	1 cut(s)	1040
Eco32I	GATATC	1 cut(s)	790
Eco47I	GGWCC	4 cut(s)	776, 797, 914, 971
Eco52I	CGGCCG	1 cut(s)	758
Eco57I	CTGAAG	1 cut(s)	308
EcoRV	GATATC	1 cut(s)	790
EcoT14I	CCWWGG	3 cut(s)	92, 351, 989
EcoT22I	ATGCAT	1 cut(s)	585
EcoT38I	GRGCYC	1 cut(s)	1040
ErhI	CCWWGG	3 cut(s)	92, 351, 989
FaeI	CATG	7 cut(s)	48, 96, 101, 583, 728, 1014, 1020
FalI	AAGNNNNNCTT	2 cut(s)	416, 448
FatI	CATG	7 cut(s)	44, 92, 97, 579, 724, 1010, 1016
FblI	GTMKAC	1 cut(s)	555
Fnu4HI	GCNGC	2 cut(s)	36, 985
FokI	GGATG	5 cut(s)	74, 305, 392, 554, 815
FriOI	GRGCYC	1 cut(s)	1040
Fsp4HI	GCNGC	2 cut(s)	36, 985
FspBI	CTAG	3 cut(s)	332, 393, 615
GluI	GCNGC	2 cut(s)	36, 985
HaeIII	GGCC	3 cut(s)	261, 760, 1001
HapII	CCGG	2 cut(s)	761, 800
Hin1II	CATG	7 cut(s)	48, 96, 101, 583, 728, 1014, 1020
HinfI	GANTC	1 cut(s)	403
HpaII	CCGG	2 cut(s)	761, 800
HphI	GGTGA	3 cut(s)	52, 320, 475
Hpy166II	GTNNAC	2 cut(s)	188, 556
Hpy188I	TCNGA	6 cut(s)	177, 709, 745, 771, 817, 914
Hpy188III	TCNNGA	4 cut(s)	362, 393, 418, 841
Hpy8I	GTNNAC	2 cut(s)	188, 556
HpyAV	CCTTC	5 cut(s)	273, 283, 463, 814, 873
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4IV	ACGT	1 cut(s)	704
HpyCH4V	TGCA	7 cut(s)	107, 239, 251, 566, 583, 649, 935
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 20, 834, 894, 949, 984, 1007
HpyF3I	CTNAG	3 cut(s)	341, 816, 1041
HpySE526I	ACGT	1 cut(s)	704
Hsp92II	CATG	7 cut(s)	48, 96, 101, 583, 728, 1014, 1020
Kzo9I	GATC	2 cut(s)	604, 1020
LmnI	GCTCC	1 cut(s)	445
LpnPI	CCDG	8 cut(s)	24, 431, 774, 780, 792, 793, 813, 1009
Lsp1109I	GCAGC	1 cut(s)	22
LweI	GCATC	3 cut(s)	469, 658, 846
MaeI	CTAG	3 cut(s)	332, 393, 615
MaeII	ACGT	1 cut(s)	704
MaeIII	GTNAC	2 cut(s)	40, 56
MalI	GATC	2 cut(s)	606, 1022
MboI	GATC	2 cut(s)	604, 1020
MboII	GAAGA	9 cut(s)	171, 190, 205, 377, 395, 433, 478, 504, 861
MflI	RGATCY	1 cut(s)	1020
MhlI	GDGCHC	2 cut(s)	310, 1040
MluCI	AATT	1 cut(s)	658
Mph1103I	ATGCAT	1 cut(s)	585
MroXI	GAANNNNTTC	1 cut(s)	425
MseI	TTAA	2 cut(s)	204, 732
MslI	CAYNNNNRTG	2 cut(s)	303, 1015
MspI	CCGG	2 cut(s)	761, 800
MwoI	GCNNNNNNNGC	7 cut(s)	11, 20, 834, 894, 949, 984, 1007
NcoI	CCATGG	1 cut(s)	92
NdeII	GATC	2 cut(s)	604, 1020
NlaIII	CATG	7 cut(s)	48, 96, 101, 583, 728, 1014, 1020
NmeAIII	GCCGAG	1 cut(s)	978
NmuCI	GTSAC	1 cut(s)	40
NsiI	ATGCAT	1 cut(s)	585
NspI	RCATGY	4 cut(s)	48, 101, 583, 1014
PaeI	GCATGC	1 cut(s)	583
PdmI	GAANNNNTTC	1 cut(s)	425
PfeI	GAWTC	1 cut(s)	403
PkrI	GCNGC	2 cut(s)	37, 986
PsiI	TTATAA	1 cut(s)	18
PspPI	GGNCC	6 cut(s)	260, 776, 797, 914, 971, 999
PsuI	RGATCY	1 cut(s)	1020
RsaI	GTAC	2 cut(s)	120, 1015
RsaNI	GTAC	2 cut(s)	119, 1014
RseI	CAYNNNNRTG	2 cut(s)	303, 1015
SaqAI	TTAA	2 cut(s)	204, 732
SatI	GCNGC	2 cut(s)	36, 985
Sau3AI	GATC	2 cut(s)	604, 1020
Sau96I	GGNCC	6 cut(s)	260, 776, 797, 914, 971, 999
SduI	GDGCHC	2 cut(s)	310, 1040
SfaNI	GCATC	3 cut(s)	469, 658, 846
SinI	GGWCC	4 cut(s)	776, 797, 914, 971
SmiMI	CAYNNNNRTG	2 cut(s)	303, 1015
SmlI	CTYRAG	2 cut(s)	918, 979
SmoI	CTYRAG	2 cut(s)	918, 979
SphI	GCATGC	1 cut(s)	583
Sse9I	AATT	1 cut(s)	658
SsiI	CCGC	3 cut(s)	38, 985, 1027
SspMI	CTAG	3 cut(s)	332, 393, 615
StyI	CCWWGG	3 cut(s)	92, 351, 989
TaaI	ACNGT	1 cut(s)	305
TaiI	ACGT	1 cut(s)	707
TaqI	TCGA	2 cut(s)	751, 1006
TasI	AATT	1 cut(s)	658
TatI	WGTACW	1 cut(s)	1013
TauI	GCSGC	1 cut(s)	987
TfiI	GAWTC	1 cut(s)	403
Tru1I	TTAA	2 cut(s)	204, 732
Tru9I	TTAA	2 cut(s)	204, 732
TscAI	CASTG	3 cut(s)	291, 513, 799
TseFI	GTSAC	1 cut(s)	40
TseI	GCWGC	1 cut(s)	35
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	2 cut(s)	396, 855
TspRI	CASTG	3 cut(s)	291, 513, 799
VpaK11BI	GGWCC	4 cut(s)	776, 797, 914, 971
XbaI	TCTAGA	1 cut(s)	392
XceI	RCATGY	4 cut(s)	48, 101, 583, 1014
XmiI	GTMKAC	1 cut(s)	555
XmnI	GAANNNNTTC	1 cut(s)	425
XspI	CTAG	3 cut(s)	332, 393, 615
Zsp2I	ATGCAT	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.