Rroxscaffold_1G00057380

UDP-glucose flavonoid 3-O-glucosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002688
Physical Location & Seq
Reverse (-)
79333254 .. 79334495
1242 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00057380.1

Sequence Viewer

Length: 1242 bp
ATGAACAAATTGGAGGTGGTGTTCATCTCAACCCCCGCAATCGGAAACCTAGTCCCACTCGTCGAGTTCGCTCAGCTCCTAGTCAACCATGACCCTCGATTCCACGCCACCATCCTCATCATCACCATGCCCCAAAGACCCACCGTCAACACTTACATCCAATCCCGCGGCGCCGCGTCAGCCACCAGCATCAACTTCCTCCACCTCCCCATCGTAGACCCACTTGCAGAGGATGAGTACCAGTCCTCCATCGCCTACCTTTCCCTACTTATACAAAAACACAAGCCCCACGTAAAGCATGCTCTAGCTGAACTCATGTCCTCGGCCGAGTCAAACCGAGTTGCATTTTTCGTGGACATGTTTTGTACGTCCATGATCGACGTTGCCAACGAGCTTGAGATTCCTTGTTATATGTATTTCGCTTCTCCGGCGACGTTTCTGAGCTTCATGTTTCATATTCCGGTCTTGGACGCCGAAATTTCAACCGACTTTGGCGACTTGGATACTGAGTTGACTATACCGGGTTTTGCTAACTCGGTGCCTCCGCTGCTGTTGCCTACGGCGCTGTTGAGTAAGAAGGGGGATTCGTACCCTTCCTATTTATCCCATACGGCAAGGTACAAGGAACCCAAGGGTATTGTTGTCAATACGTTCAAGGAATTGGAGCCGCACGCGCTTAGCTCGCTGGCTGCGAGTGATGTGCCGCGAGTTCACGCTATTGGGCCGATTCTTGATCTTAATGGGCCGGGCCAATGGCAGGATCCCGACCGGTACGAGAGCGTGGTGAAGTGGCTTGATGACCAGCCTCCATCGTCTGTGGTGCTGTTGTGCTTTGGGAGCATGGGGAGTCTTAGTGGGCCTCAGGTGAGGGAGATAGCATTTGGGCTGGAAAGGGCTGGGTTTCGGTTCTTATGGGCATTGCGTGAACCGCCCAAGTCCCCTGTGTACCTCCCAAGCGACCCCGCAAACGTAGACGAGGTATTGCCACACGGGTTTTTAGAACGGACATGCAAATTGGGCTTAGTGTGCGGGTGGGTTCCGCAAGTGAAGATTCTGGCCCACCAAGCGATCGGAGGGTTCATATCGCATTGCGGGTGGAACTCTATTTTGGAGAGCTTGTGGTATGGAGTACCGATTGCCACTTGGCCGATTTACGCAGAACAACAAATGAACGCGTTTGAGATGGTGAAGGAATTGGGATTGGCAGTGGAGATTAGGCTGGACTACAGGGAGGGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

413

Amino Acids

45.82

Weight (kDa)

5.29

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 272 - 398 1.2e-20 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 170, 538
AccI GTMKAC 2 cut(s) 216, 972
AccII CGCG 5 cut(s) 168, 176, 674, 706, 1175
AclWI GGATC 2 cut(s) 755, 768
AcoI YGGCCR 2 cut(s) 324, 1145
AcsI RAATTY 1 cut(s) 477
AcyI GRCGYC 2 cut(s) 171, 471
AfaI GTAC 7 cut(s) 239, 367, 590, 620, 773, 947, 1131
AfiI CCNNNNNNNGG 2 cut(s) 41, 757
AflIII ACRYGT 2 cut(s) 357, 1173
AgeI ACCGGT 1 cut(s) 768
AgsI TTSAA 2 cut(s) 483, 655
AhdI GACNNNNNGTC 1 cut(s) 143
AjuI GAANNNNNNNTTGG 2 cut(s) 1091, 1123
AloI GAACNNNNNNTCC 1 cut(s) 37
AluBI AGCT 6 cut(s) 76, 308, 394, 444, 681, 1116
AluI AGCT 6 cut(s) 76, 308, 394, 444, 681, 1116
AlwI GGATC 2 cut(s) 755, 768
AoxI GGCC 7 cut(s) 324, 722, 743, 748, 857, 1056, 1145
ApeKI GCWGC 2 cut(s) 547, 689
ApoI RAATTY 1 cut(s) 477
AsiGI ACCGGT 1 cut(s) 768
AspLEI GCGC 3 cut(s) 173, 565, 676
AspS9I GGNCC 5 cut(s) 722, 743, 748, 857, 1057
AsuC2I CCSGG 2 cut(s) 522, 747
AsuHPI GGTGA 4 cut(s) 115, 796, 877, 1198
AxyI CCTNAGG 1 cut(s) 861
BamHI GGATCC 1 cut(s) 760
BanI GGYRCC 2 cut(s) 170, 538
BbvI GCAGC 2 cut(s) 534, 676
BccI CCATC 5 cut(s) 119, 218, 257, 817, 1177
BceAI ACGGC 2 cut(s) 576, 627
BcgI CGANNNNNNTGC 2 cut(s) 682, 716
BciVI GTATCC 1 cut(s) 496
BcnI CCSGG 2 cut(s) 522, 747
BfaI CTAG 3 cut(s) 50, 80, 305
BfmI CTRYAG 1 cut(s) 1225
BfoI RGCGCY 2 cut(s) 174, 566
BfuI GTATCC 1 cut(s) 496
BisI GCNGC 6 cut(s) 169, 174, 548, 668, 690, 704
BlpI GCTNAGC 2 cut(s) 72, 677
BlsI GCNGC 6 cut(s) 170, 175, 549, 669, 691, 705
Bme1390I CCNGG 2 cut(s) 522, 747
BmeRI GACNNNNNGTC 1 cut(s) 143
BmgT120I GGNCC 5 cut(s) 722, 743, 748, 857, 1057
BmiI GGNNCC 6 cut(s) 172, 540, 627, 666, 762, 1038
BmrFI CCNGG 2 cut(s) 522, 747
BmsI GCATC 1 cut(s) 198
Bpu1102I GCTNAGC 2 cut(s) 72, 677
BpuEI CTTGAG 1 cut(s) 416
BpuMI CCSGG 2 cut(s) 522, 747
BsaAI YACGTR 1 cut(s) 292
BsaHI GRCGYC 2 cut(s) 171, 471
BsaJI CCNNGG 3 cut(s) 166, 321, 630
BsaWI WCCGGW 2 cut(s) 460, 768
BsaXI ACNNNNNCTCC 9 cut(s) 5, 35, 230, 260, 838, 868, 1103, 1133, 1223
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 757
Bse118I RCCGGY 1 cut(s) 768
Bse1I ACTGG 1 cut(s) 241
Bse21I CCTNAGG 1 cut(s) 861
Bse3DI GCAATG 2 cut(s) 917, 1087
BseDI CCNNGG 3 cut(s) 166, 321, 630
BseGI GGATG 3 cut(s) 111, 156, 238
BseLI CCNNNNNNNGG 2 cut(s) 41, 757
BseMI GCAATG 2 cut(s) 917, 1087
BseMII CTCAG 4 cut(s) 86, 431, 498, 875
BseNI ACTGG 1 cut(s) 241
BseX3I CGGCCG 1 cut(s) 324
BseXI GCAGC 2 cut(s) 534, 676
BseYI CCCAGC 1 cut(s) 896
Bsh1236I CGCG 5 cut(s) 168, 176, 674, 706, 1175
Bsh1285I CGRYCG 3 cut(s) 327, 769, 1071
BshFI GGCC 7 cut(s) 326, 724, 745, 750, 859, 1058, 1147
BshNI GGYRCC 2 cut(s) 170, 538
BshTI ACCGGT 1 cut(s) 768
BsiEI CGRYCG 3 cut(s) 327, 769, 1071
BsiSI CCGG 5 cut(s) 428, 461, 521, 746, 769
BslFI GGGAC 2 cut(s) 38, 922
BslI CCNNNNNNNGG 2 cut(s) 41, 757
BsmFI GGGAC 2 cut(s) 38, 922
BsnI GGCC 7 cut(s) 326, 724, 745, 750, 859, 1058, 1147
Bsp143I GATC 4 cut(s) 375, 733, 760, 1068
Bsp1720I GCTNAGC 2 cut(s) 72, 677
BspANI GGCC 7 cut(s) 326, 724, 745, 750, 859, 1058, 1147
BspCNI CTCAG 4 cut(s) 85, 432, 499, 874
BspFNI CGCG 5 cut(s) 168, 176, 674, 706, 1175
BspLI GGNNCC 6 cut(s) 172, 540, 627, 666, 762, 1038
BspPI GGATC 2 cut(s) 755, 768
BspT107I GGYRCC 2 cut(s) 170, 538
BsrDI GCAATG 2 cut(s) 917, 1087
BsrFI RCCGGY 1 cut(s) 768
BsrI ACTGG 1 cut(s) 241
BssAI RCCGGY 1 cut(s) 768
BssECI CCNNGG 3 cut(s) 166, 321, 630
BssMI GATC 4 cut(s) 375, 733, 760, 1068
BssNI GRCGYC 2 cut(s) 171, 471
BssT1I CCWWGG 1 cut(s) 630
Bst4CI ACNGT 1 cut(s) 145
BstACI GRCGYC 2 cut(s) 171, 471
BstBAI YACGTR 1 cut(s) 292
BstC8I GCNNGC 4 cut(s) 300, 672, 683, 687
BstDEI CTNAG 7 cut(s) 72, 440, 507, 677, 851, 861, 1021
BstDSI CCRYGG 1 cut(s) 166
BstF5I GGATG 3 cut(s) 111, 156, 238
BstFNI CGCG 5 cut(s) 168, 176, 674, 706, 1175
BstH2I RGCGCY 2 cut(s) 174, 566
BstHHI GCGC 3 cut(s) 173, 565, 676
BstKTI GATC 4 cut(s) 378, 736, 763, 1071
BstMBI GATC 4 cut(s) 375, 733, 760, 1068
BstMCI CGRYCG 3 cut(s) 327, 769, 1071
BstNSI RCATGY 3 cut(s) 302, 361, 1011
BstSCI CCNGG 2 cut(s) 520, 745
BstSFI CTRYAG 1 cut(s) 1225
BstUI CGCG 5 cut(s) 168, 176, 674, 706, 1175
BstV1I GCAGC 2 cut(s) 534, 676
BstX2I RGATCY 1 cut(s) 760
BstYI RGATCY 1 cut(s) 760
BstZI CGGCCG 1 cut(s) 324
Bsu36I CCTNAGG 1 cut(s) 861
BsuI GTATCC 1 cut(s) 496
BsuRI GGCC 7 cut(s) 326, 724, 745, 750, 859, 1058, 1147
BtgI CCRYGG 1 cut(s) 166
BtgZI GCGATG 1 cut(s) 235
BtsCI GGATG 3 cut(s) 111, 156, 238
BtsI GCAGTG 1 cut(s) 1212
BtsIMutI CAGTG 1 cut(s) 1212
Cac8I GCNNGC 4 cut(s) 300, 672, 683, 687
CfoI GCGC 3 cut(s) 173, 565, 676
Cfr10I RCCGGY 1 cut(s) 768
Cfr13I GGNCC 5 cut(s) 722, 743, 748, 857, 1057
Cfr42I CCGCGG 1 cut(s) 169
CseI GACGC 2 cut(s) 165, 479
Csp6I GTAC 7 cut(s) 238, 366, 589, 619, 772, 946, 1130
CspAI ACCGGT 1 cut(s) 768
CviAII CATG 9 cut(s) 89, 127, 299, 316, 358, 373, 448, 841, 1008
CviQI GTAC 7 cut(s) 238, 366, 589, 619, 772, 946, 1130
DdeI CTNAG 7 cut(s) 72, 440, 507, 677, 851, 861, 1021
DinI GGCGCC 1 cut(s) 172
DpnI GATC 4 cut(s) 377, 735, 762, 1070
DpnII GATC 4 cut(s) 375, 733, 760, 1068
DriI GACNNNNNGTC 1 cut(s) 143
EaeI YGGCCR 2 cut(s) 324, 1145
EagI CGGCCG 1 cut(s) 324
Eam1105I GACNNNNNGTC 1 cut(s) 143
EclXI CGGCCG 1 cut(s) 324
Eco130I CCWWGG 1 cut(s) 630
Eco52I CGGCCG 1 cut(s) 324
Eco81I CCTNAGG 1 cut(s) 861
EcoT14I CCWWGG 1 cut(s) 630
EgeI GGCGCC 1 cut(s) 172
EheI GGCGCC 1 cut(s) 172
ErhI CCWWGG 1 cut(s) 630
FaeI CATG 9 cut(s) 92, 130, 302, 319, 361, 376, 451, 844, 1011
FaqI GGGAC 2 cut(s) 38, 922
FatI CATG 9 cut(s) 88, 126, 298, 315, 357, 372, 447, 840, 1007
FauI CCCGC 5 cut(s) 43, 173, 970, 1022, 1085
FblI GTMKAC 2 cut(s) 216, 972
Fnu4HI GCNGC 6 cut(s) 169, 174, 548, 668, 690, 704
FokI GGATG 3 cut(s) 98, 143, 245
Fsp4HI GCNGC 6 cut(s) 169, 174, 548, 668, 690, 704
FspBI CTAG 3 cut(s) 50, 80, 305
GlaI GCGC 3 cut(s) 172, 564, 675
GluI GCNGC 6 cut(s) 169, 174, 548, 668, 690, 704
GsaI CCCAGC 1 cut(s) 900
HaeII RGCGCY 2 cut(s) 174, 566
HaeIII GGCC 7 cut(s) 326, 724, 745, 750, 859, 1058, 1147
HapII CCGG 5 cut(s) 428, 461, 521, 746, 769
HgaI GACGC 2 cut(s) 165, 479
HhaI GCGC 3 cut(s) 173, 565, 676
Hin1I GRCGYC 2 cut(s) 171, 471
Hin1II CATG 9 cut(s) 92, 130, 302, 319, 361, 376, 451, 844, 1011
Hin6I GCGC 3 cut(s) 171, 563, 674
HinP1I GCGC 3 cut(s) 171, 563, 674
HincII GTYRAC 3 cut(s) 85, 148, 513
HindII GTYRAC 3 cut(s) 85, 148, 513
HinfI GANTC 7 cut(s) 99, 329, 400, 584, 727, 847, 1051
HpaII CCGG 5 cut(s) 428, 461, 521, 746, 769
HphI GGTGA 4 cut(s) 115, 796, 877, 1198
Hpy166II GTNNAC 9 cut(s) 85, 148, 217, 355, 513, 712, 926, 946, 973
Hpy188I TCNGA 3 cut(s) 44, 441, 1073
Hpy188III TCNNGA 2 cut(s) 731, 764
Hpy8I GTNNAC 9 cut(s) 85, 148, 217, 355, 513, 712, 926, 946, 973
Hpy99I CGWCG 3 cut(s) 65, 383, 436
HpyAV CCTTC 3 cut(s) 571, 603, 1183
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 6 cut(s) 291, 368, 381, 434, 650, 969
HpyCH4V TGCA 3 cut(s) 227, 344, 1011
HpyF3I CTNAG 7 cut(s) 72, 440, 507, 677, 851, 861, 1021
HpySE526I ACGT 6 cut(s) 291, 368, 381, 434, 650, 969
Hsp92I GRCGYC 2 cut(s) 171, 471
Hsp92II CATG 9 cut(s) 92, 130, 302, 319, 361, 376, 451, 844, 1011
HspAI GCGC 3 cut(s) 171, 563, 674
KasI GGCGCC 1 cut(s) 170
KspI CCGCGG 1 cut(s) 169
Kzo9I GATC 4 cut(s) 375, 733, 760, 1068
LmnI GCTCC 3 cut(s) 81, 664, 837
Lsp1109I GCAGC 2 cut(s) 534, 676
LweI GCATC 1 cut(s) 198
MaeI CTAG 3 cut(s) 50, 80, 305
MaeII ACGT 6 cut(s) 291, 368, 381, 434, 650, 969
MalI GATC 4 cut(s) 377, 735, 762, 1070
MboI GATC 4 cut(s) 375, 733, 760, 1068
MboII GAAGA 1 cut(s) 1060
MflI RGATCY 1 cut(s) 760
MluCI AATT 5 cut(s) 8, 477, 659, 1013, 1193
MluI ACGCGT 1 cut(s) 1173
Mly113I GGCGCC 1 cut(s) 171
MlyI GAGTC 2 cut(s) 338, 856
MseI TTAA 1 cut(s) 738
MslI CAYNNNNRTG 1 cut(s) 125
MspA1I CMGCKG 2 cut(s) 168, 547
MspI CCGG 5 cut(s) 428, 461, 521, 746, 769
MspR9I CCNGG 2 cut(s) 522, 747
MvnI CGCG 5 cut(s) 168, 176, 674, 706, 1175
NarI GGCGCC 1 cut(s) 171
NciI CCSGG 2 cut(s) 522, 747
NdeII GATC 4 cut(s) 375, 733, 760, 1068
NlaIII CATG 9 cut(s) 92, 130, 302, 319, 361, 376, 451, 844, 1011
NlaIV GGNNCC 6 cut(s) 172, 540, 627, 666, 762, 1038
NmeAIII GCCGAG 2 cut(s) 302, 352
NspI RCATGY 3 cut(s) 302, 361, 1011
PaeI GCATGC 1 cut(s) 302
PciI ACATGT 1 cut(s) 357
PcsI WCGNNNNNNNCGW 2 cut(s) 387, 689
PfeI GAWTC 5 cut(s) 99, 400, 584, 727, 1051
PinAI ACCGGT 1 cut(s) 768
PkrI GCNGC 6 cut(s) 170, 175, 549, 669, 691, 705
Ple19I CGATCG 1 cut(s) 1071
PleI GAGTC 2 cut(s) 337, 855
PluTI GGCGCC 1 cut(s) 174
PpsI GAGTC 2 cut(s) 337, 855
Ppu21I YACGTR 1 cut(s) 292
PscI ACATGT 1 cut(s) 357
PspFI CCCAGC 1 cut(s) 896
PspN4I GGNNCC 6 cut(s) 172, 540, 627, 666, 762, 1038
PspPI GGNCC 5 cut(s) 722, 743, 748, 857, 1057
PsuI RGATCY 1 cut(s) 760
PvuI CGATCG 1 cut(s) 1071
RsaI GTAC 7 cut(s) 239, 367, 590, 620, 773, 947, 1131
RsaNI GTAC 7 cut(s) 238, 366, 589, 619, 772, 946, 1130
RseI CAYNNNNRTG 1 cut(s) 125
SacII CCGCGG 1 cut(s) 169
SaqAI TTAA 1 cut(s) 738
SatI GCNGC 6 cut(s) 169, 174, 548, 668, 690, 704
Sau3AI GATC 4 cut(s) 375, 733, 760, 1068
Sau96I GGNCC 5 cut(s) 722, 743, 748, 857, 1057
SchI GAGTC 2 cut(s) 338, 856
ScrFI CCNGG 2 cut(s) 522, 747
SfaNI GCATC 1 cut(s) 198
SfcI CTRYAG 1 cut(s) 1225
SfoI GGCGCC 1 cut(s) 172
Sfr303I CCGCGG 1 cut(s) 169
SgrBI CCGCGG 1 cut(s) 169
SmiMI CAYNNNNRTG 1 cut(s) 125
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
SphI GCATGC 1 cut(s) 302
Sse9I AATT 5 cut(s) 8, 477, 659, 1013, 1193
SspDI GGCGCC 1 cut(s) 170
SspMI CTAG 3 cut(s) 50, 80, 305
StyD4I CCNGG 2 cut(s) 520, 745
StyI CCWWGG 1 cut(s) 630
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 6 cut(s) 294, 371, 384, 437, 653, 972
TaqI TCGA 3 cut(s) 63, 97, 378
TasI AATT 5 cut(s) 8, 477, 659, 1013, 1193
TauI GCSGC 4 cut(s) 171, 176, 670, 706
TfiI GAWTC 5 cut(s) 99, 400, 584, 727, 1051
Tru1I TTAA 1 cut(s) 738
Tru9I TTAA 1 cut(s) 738
TscAI CASTG 1 cut(s) 1212
TseI GCWGC 2 cut(s) 547, 689
TspDTI ATGAA 6 cut(s) 13, 17, 436, 443, 1069, 1184
TspGWI ACGGA 1 cut(s) 1018
TspRI CASTG 1 cut(s) 1212
XapI RAATTY 1 cut(s) 477
XceI RCATGY 3 cut(s) 302, 361, 1011
XmiI GTMKAC 2 cut(s) 216, 972
XspI CTAG 3 cut(s) 50, 80, 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.