Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002688

Physical Location & Seq

Genomic Coordinates Forward (+)

15525571 .. 15526671

Gene Structure 1101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG166600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGTCCTCGGCCGAGTCAAACCGAGTTGCGTTTTTCGTGGACATGTTTTGTACGTCCATGATCGACGTTGCCAACGAGCTTGAGATTCCTTGTTATATGTATTTCGCTTCTCCGGCGACGTTTCTGAGCTTCATGTTTCATATTCAGGTCTTGGACGCCGAAATTTCAACCGACTTTGGCGACTTGGATACGGAGTTGACTATACCGGGTTTTGCTAACTCGGTGCCTCCACTGGTGTTGCCGACGGCGCTGTTGAGTAAGAAGGGGGATACGTACCCTTCCTATTTATCCCATACGGCAAGGTACAAGGAACCCAAGGGTATTGTTGTCAATACGTTCAAGGAACTGGAGCCACACGCGCTTAGCTCGCTGGCTGCGAGTGATGTGCCGCGAGTTCACGCTATTGGGCCGATTCTTGATCTTAATGGGCCCGGCCAATGGCAGGATCCCGACCGGTACGAGAGCGTGGTGAAGTGGCTTGATGACCAGCCTCCATCGTCTGTGGTGTTGTTGTGCTTTGGGAGCATGGGGAGTCTTAGTGGGCCTCAGGTGAGGGAGATAGCATTTGGGCTGGAAAGGGCTGGGTTTCGGTTCTTATGGGCATTGCGTGAACCGCCCAAGTCCGCTGTGTACCTCCCAAGCGACCCCGTAAACGTAGACGAGGAATTGGGATTGGCAGTGGAGATTAGGCTGGACTATAGGGAGGGAAGTAATTTGGTGATGGCGGAGGAGGTGGAGAGAAGCATAAAGAGCTTGATGGACGGTGATCATGTGGTGAGGACTAGGGTGAAAGACATGAGAGAGAAGAGTAGGGGAGCATTGATGGAAAATGGGTCTGCATACAAAGCACTAGAAGGTTTAATTGAGGAGCTAATGCCCAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

295

Amino Acids

32.73

Weight (kDa)

4.75

Isoelectric Point (pI)

37.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02620 FvH4_2g02630 FvH4_3g12970 FvH4_3g12970 FvH4_3g17180 FvH4_3g17181
malus_domestica	MD05G1246700.v1.1
prunus_persica	Prupe.4G117900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0153371 RchiOBHm_Chr5g0021081 RchiOBHm_Chr5g0021091 RchiOBHm_Chr5g0021101
rosa_laevigata	RLG00000032582 RLG00000032583 RLG00000032584 RLG00000032587
rosa_multiflora	Rmu_co7967648.1_g000001 Rmu_co8022450.1_g000001 Rmu_co8209284.1_g000001 Rmu_co8295101.1_g000001 Rmu_sc0002467.1_g000005 Rmu_sc0041861.1_g000001 Rmu_ssc0000244.1_g000020 Rmu_ssc0000244.1_g000027 Rmu_ssc0000244.1_g000028
rosa_roxburghii	Rroxscaffold_1G00057340 Rroxscaffold_1G00057380
rosa_rugosa	Rorug05G0064300 Rorug05G0064400 Rorug05G0064500 Rorug05G0064700
rosa_samantha	Rh2AG501400 Rh5CG166400 Rh5CG166500 Rh5CG166600 Rh5DG153100 Rh5DG153300 Rh5DG153400
rosa_wichuraiana	Rw5G013670 Rw5G013680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	223
AccI	GTMKAC	1 cut(s)	657
AccII	CGCG	2 cut(s)	359, 391
AciI	CCGC	4 cut(s)	389, 614, 624, 725
AclWI	GGATC	2 cut(s)	440, 453
AcoI	YGGCCR	2 cut(s)	9, 433
AcsI	RAATTY	1 cut(s)	162
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	5 cut(s)	52, 275, 305, 458, 632
AfiI	CCNNNNNNNGG	2 cut(s)	438, 442
AflIII	ACRYGT	1 cut(s)	42
AgeI	ACCGGT	1 cut(s)	453
AgsI	TTSAA	2 cut(s)	168, 340
AluBI	AGCT	5 cut(s)	79, 129, 366, 753, 871
AluI	AGCT	5 cut(s)	79, 129, 366, 753, 871
AlwI	GGATC	2 cut(s)	440, 453
AoxI	GGCC	5 cut(s)	9, 407, 428, 433, 542
ApaI	GGGCCC	1 cut(s)	432
ApeKI	GCWGC	1 cut(s)	374
ApoI	RAATTY	1 cut(s)	162
AsiGI	ACCGGT	1 cut(s)	453
AspLEI	GCGC	2 cut(s)	250, 361
AspS9I	GGNCC	4 cut(s)	407, 428, 429, 542
AsuC2I	CCSGG	2 cut(s)	207, 432
AsuHPI	GGTGA	6 cut(s)	481, 562, 730, 776, 787, 799
AxyI	CCTNAGG	1 cut(s)	546
BaeGI	GKGCMC	1 cut(s)	432
BamHI	GGATCC	1 cut(s)	445
BanI	GGYRCC	1 cut(s)	223
BanII	GRGCYC	1 cut(s)	432
BbvI	GCAGC	1 cut(s)	361
BccI	CCATC	4 cut(s)	502, 715, 751, 817
BceAI	ACGGC	2 cut(s)	261, 312
BcgI	CGANNNNNNTGC	2 cut(s)	367, 401
BciVI	GTATCC	2 cut(s)	181, 262
BclI	TGATCA	1 cut(s)	766
BcnI	CCSGG	2 cut(s)	207, 432
BfaI	CTAG	2 cut(s)	783, 851
BfmI	CTRYAG	1 cut(s)	697
BfoI	RGCGCY	1 cut(s)	251
BfuI	GTATCC	2 cut(s)	181, 262
BisI	GCNGC	2 cut(s)	375, 389
BlpI	GCTNAGC	1 cut(s)	362
BlsI	GCNGC	2 cut(s)	376, 390
Bme1390I	CCNGG	2 cut(s)	207, 432
BmgT120I	GGNCC	4 cut(s)	407, 428, 429, 542
BmiI	GGNNCC	5 cut(s)	225, 312, 351, 430, 447
BmrFI	CCNGG	2 cut(s)	207, 432
BpmI	CTGGAG	1 cut(s)	368
Bpu1102I	GCTNAGC	1 cut(s)	362
BpuEI	CTTGAG	1 cut(s)	101
BpuMI	CCSGG	2 cut(s)	207, 432
BsaAI	YACGTR	1 cut(s)	273
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	2 cut(s)	6, 315
BsaWI	WCCGGW	1 cut(s)	453
BsaXI	ACNNNNNCTCC	2 cut(s)	523, 553
Bsc4I	CCNNNNNNNGG	2 cut(s)	438, 442
Bse118I	RCCGGY	1 cut(s)	453
Bse1I	ACTGG	2 cut(s)	237, 351
Bse21I	CCTNAGG	1 cut(s)	546
Bse3DI	GCAATG	1 cut(s)	602
BseDI	CCNNGG	2 cut(s)	6, 315
BseLI	CCNNNNNNNGG	2 cut(s)	438, 442
BseMI	GCAATG	1 cut(s)	602
BseMII	CTCAG	2 cut(s)	116, 560
BseNI	ACTGG	2 cut(s)	237, 351
BseRI	GAGGAG	2 cut(s)	743, 881
BseSI	GKGCMC	1 cut(s)	432
BseX3I	CGGCCG	1 cut(s)	9
BseXI	GCAGC	1 cut(s)	361
BseYI	CCCAGC	1 cut(s)	581
Bsh1236I	CGCG	2 cut(s)	359, 391
Bsh1285I	CGRYCG	2 cut(s)	12, 454
BshFI	GGCC	5 cut(s)	11, 409, 430, 435, 544
BshNI	GGYRCC	1 cut(s)	223
BshTI	ACCGGT	1 cut(s)	453
BsiEI	CGRYCG	2 cut(s)	12, 454
BsiSI	CCGG	4 cut(s)	113, 206, 432, 454
BslI	CCNNNNNNNGG	2 cut(s)	438, 442
BsnI	GGCC	5 cut(s)	11, 409, 430, 435, 544
Bsp120I	GGGCCC	1 cut(s)	428
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp143I	GATC	4 cut(s)	60, 418, 445, 766
Bsp1720I	GCTNAGC	1 cut(s)	362
BspACI	CCGC	4 cut(s)	389, 614, 624, 725
BspANI	GGCC	5 cut(s)	11, 409, 430, 435, 544
BspCNI	CTCAG	2 cut(s)	117, 559
BspFNI	CGCG	2 cut(s)	359, 391
BspLI	GGNNCC	5 cut(s)	225, 312, 351, 430, 447
BspPI	GGATC	2 cut(s)	440, 453
BspT107I	GGYRCC	1 cut(s)	223
BsrDI	GCAATG	1 cut(s)	602
BsrFI	RCCGGY	1 cut(s)	453
BsrI	ACTGG	2 cut(s)	237, 351
BssAI	RCCGGY	1 cut(s)	453
BssECI	CCNNGG	2 cut(s)	6, 315
BssMI	GATC	4 cut(s)	60, 418, 445, 766
BssNI	GRCGYC	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	315
Bst4CI	ACNGT	1 cut(s)	764
Bst6I	CTCTTC	1 cut(s)	800
BstACI	GRCGYC	1 cut(s)	156
BstBAI	YACGTR	1 cut(s)	273
BstC8I	GCNNGC	2 cut(s)	368, 372
BstDEI	CTNAG	4 cut(s)	125, 362, 536, 546
BstFNI	CGCG	2 cut(s)	359, 391
BstH2I	RGCGCY	1 cut(s)	251
BstHHI	GCGC	2 cut(s)	250, 361
BstKTI	GATC	4 cut(s)	63, 421, 448, 769
BstMBI	GATC	4 cut(s)	60, 418, 445, 766
BstMCI	CGRYCG	2 cut(s)	12, 454
BstMWI	GCNNNNNNNGC	8 cut(s)	113, 247, 358, 367, 522, 613, 750, 845
BstNSI	RCATGY	1 cut(s)	46
BstSCI	CCNGG	2 cut(s)	205, 430
BstSFI	CTRYAG	1 cut(s)	697
BstSLI	GKGCMC	1 cut(s)	432
BstSNI	TACGTA	1 cut(s)	273
BstUI	CGCG	2 cut(s)	359, 391
BstV1I	GCAGC	1 cut(s)	361
BstX2I	RGATCY	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	445
BstZI	CGGCCG	1 cut(s)	9
Bsu36I	CCTNAGG	1 cut(s)	546
BsuI	GTATCC	2 cut(s)	181, 262
BsuRI	GGCC	5 cut(s)	11, 409, 430, 435, 544
BtsI	GCAGTG	1 cut(s)	684
BtsIMutI	CAGTG	2 cut(s)	230, 684
Cac8I	GCNNGC	2 cut(s)	368, 372
CfoI	GCGC	2 cut(s)	250, 361
Cfr10I	RCCGGY	1 cut(s)	453
Cfr13I	GGNCC	4 cut(s)	407, 428, 429, 542
CseI	GACGC	1 cut(s)	164
Csp6I	GTAC	5 cut(s)	51, 274, 304, 457, 631
CspAI	ACCGGT	1 cut(s)	453
CspCI	CAANNNNNGTGG	2 cut(s)	219, 254
CviAII	CATG	6 cut(s)	43, 58, 133, 526, 770, 796
CviQI	GTAC	5 cut(s)	51, 274, 304, 457, 631
DdeI	CTNAG	4 cut(s)	125, 362, 536, 546
DpnI	GATC	4 cut(s)	62, 420, 447, 768
DpnII	GATC	4 cut(s)	60, 418, 445, 766
EaeI	YGGCCR	2 cut(s)	9, 433
EagI	CGGCCG	1 cut(s)	9
Eam1104I	CTCTTC	1 cut(s)	800
EarI	CTCTTC	1 cut(s)	800
EciI	GGCGGA	1 cut(s)	740
EclXI	CGGCCG	1 cut(s)	9
Eco105I	TACGTA	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	315
Eco24I	GRGCYC	1 cut(s)	432
Eco52I	CGGCCG	1 cut(s)	9
Eco81I	CCTNAGG	1 cut(s)	546
EcoT14I	CCWWGG	1 cut(s)	315
EcoT38I	GRGCYC	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	315
FaeI	CATG	6 cut(s)	46, 61, 136, 529, 773, 799
FatI	CATG	6 cut(s)	42, 57, 132, 525, 769, 795
FbaI	TGATCA	1 cut(s)	766
FblI	GTMKAC	1 cut(s)	657
Fnu4HI	GCNGC	2 cut(s)	375, 389
FriOI	GRGCYC	1 cut(s)	432
Fsp4HI	GCNGC	2 cut(s)	375, 389
FspBI	CTAG	2 cut(s)	783, 851
GlaI	GCGC	2 cut(s)	249, 360
GluI	GCNGC	2 cut(s)	375, 389
GsaI	CCCAGC	1 cut(s)	585
GsuI	CTGGAG	1 cut(s)	368
HaeII	RGCGCY	1 cut(s)	251
HaeIII	GGCC	5 cut(s)	11, 409, 430, 435, 544
HapII	CCGG	4 cut(s)	113, 206, 432, 454
HgaI	GACGC	1 cut(s)	164
HhaI	GCGC	2 cut(s)	250, 361
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	6 cut(s)	46, 61, 136, 529, 773, 799
Hin6I	GCGC	2 cut(s)	248, 359
HinP1I	GCGC	2 cut(s)	248, 359
HincII	GTYRAC	1 cut(s)	198
HindII	GTYRAC	1 cut(s)	198
HinfI	GANTC	4 cut(s)	14, 85, 412, 532
HpaII	CCGG	4 cut(s)	113, 206, 432, 454
HphI	GGTGA	6 cut(s)	481, 562, 730, 776, 787, 799
Hpy166II	GTNNAC	7 cut(s)	40, 198, 397, 611, 631, 652, 658
Hpy188I	TCNGA	1 cut(s)	126
Hpy188III	TCNNGA	2 cut(s)	416, 449
Hpy8I	GTNNAC	7 cut(s)	40, 198, 397, 611, 631, 652, 658
Hpy99I	CGWCG	3 cut(s)	68, 121, 247
HpyAV	CCTTC	3 cut(s)	256, 288, 848
HpyCH4III	ACNGT	1 cut(s)	764
HpyCH4IV	ACGT	6 cut(s)	53, 66, 119, 272, 335, 654
HpyCH4V	TGCA	1 cut(s)	839
HpyF10VI	GCNNNNNNNGC	8 cut(s)	113, 247, 358, 367, 522, 613, 750, 845
HpyF3I	CTNAG	4 cut(s)	125, 362, 536, 546
HpySE526I	ACGT	6 cut(s)	53, 66, 119, 272, 335, 654
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	6 cut(s)	46, 61, 136, 529, 773, 799
HspAI	GCGC	2 cut(s)	248, 359
Ksp22I	TGATCA	1 cut(s)	766
Kzo9I	GATC	4 cut(s)	60, 418, 445, 766
LmnI	GCTCC	4 cut(s)	349, 522, 815, 868
Lsp1109I	GCAGC	1 cut(s)	361
MaeI	CTAG	2 cut(s)	783, 851
MaeII	ACGT	6 cut(s)	53, 66, 119, 272, 335, 654
MalI	GATC	4 cut(s)	62, 420, 447, 768
MboI	GATC	4 cut(s)	60, 418, 445, 766
MboII	GAAGA	1 cut(s)	817
MflI	RGATCY	1 cut(s)	445
MhlI	GDGCHC	1 cut(s)	432
MluCI	AATT	4 cut(s)	162, 665, 712, 861
MlyI	GAGTC	2 cut(s)	23, 541
MseI	TTAA	2 cut(s)	423, 860
MspA1I	CMGCKG	1 cut(s)	626
MspI	CCGG	4 cut(s)	113, 206, 432, 454
MspR9I	CCNGG	2 cut(s)	207, 432
MvnI	CGCG	2 cut(s)	359, 391
MwoI	GCNNNNNNNGC	8 cut(s)	113, 247, 358, 367, 522, 613, 750, 845
NciI	CCSGG	2 cut(s)	207, 432
NdeII	GATC	4 cut(s)	60, 418, 445, 766
NlaIII	CATG	6 cut(s)	46, 61, 136, 529, 773, 799
NlaIV	GGNNCC	5 cut(s)	225, 312, 351, 430, 447
NmeAIII	GCCGAG	1 cut(s)	37
NspI	RCATGY	1 cut(s)	46
PciI	ACATGT	1 cut(s)	42
PcsI	WCGNNNNNNNCGW	2 cut(s)	72, 374
PfeI	GAWTC	2 cut(s)	85, 412
PinAI	ACCGGT	1 cut(s)	453
PkrI	GCNGC	2 cut(s)	376, 390
PleI	GAGTC	2 cut(s)	22, 540
PpsI	GAGTC	2 cut(s)	22, 540
Ppu21I	YACGTR	1 cut(s)	273
PscI	ACATGT	1 cut(s)	42
PspFI	CCCAGC	1 cut(s)	581
PspN4I	GGNNCC	5 cut(s)	225, 312, 351, 430, 447
PspOMI	GGGCCC	1 cut(s)	428
PspPI	GGNCC	4 cut(s)	407, 428, 429, 542
PsuI	RGATCY	1 cut(s)	445
RsaI	GTAC	5 cut(s)	52, 275, 305, 458, 632
RsaNI	GTAC	5 cut(s)	51, 274, 304, 457, 631
SaqAI	TTAA	2 cut(s)	423, 860
SatI	GCNGC	2 cut(s)	375, 389
Sau3AI	GATC	4 cut(s)	60, 418, 445, 766
Sau96I	GGNCC	4 cut(s)	407, 428, 429, 542
SchI	GAGTC	2 cut(s)	23, 541
ScrFI	CCNGG	2 cut(s)	207, 432
SduI	GDGCHC	1 cut(s)	432
SfcI	CTRYAG	1 cut(s)	697
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
SnaBI	TACGTA	1 cut(s)	273
Sse9I	AATT	4 cut(s)	162, 665, 712, 861
SsiI	CCGC	4 cut(s)	389, 614, 624, 725
SspMI	CTAG	2 cut(s)	783, 851
StyD4I	CCNGG	2 cut(s)	205, 430
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	1 cut(s)	764
TaiI	ACGT	6 cut(s)	56, 69, 122, 275, 338, 657
TaqI	TCGA	1 cut(s)	63
TasI	AATT	4 cut(s)	162, 665, 712, 861
TauI	GCSGC	1 cut(s)	391
TfiI	GAWTC	2 cut(s)	85, 412
Tru1I	TTAA	2 cut(s)	423, 860
Tru9I	TTAA	2 cut(s)	423, 860
TscAI	CASTG	2 cut(s)	237, 684
TseI	GCWGC	1 cut(s)	374
TspDTI	ATGAA	2 cut(s)	121, 128
TspGWI	ACGGA	1 cut(s)	206
TspRI	CASTG	2 cut(s)	237, 684
XapI	RAATTY	1 cut(s)	162
XceI	RCATGY	1 cut(s)	46
XmiI	GTMKAC	1 cut(s)	657
XspI	CTAG	2 cut(s)	783, 851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.