FvH4_3g12970

UDP-glucose flavonoid 3-O-glucosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0002688
Physical Location & Seq
Forward (+)
7753985 .. 7756312
2328 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g12970.t1

Sequence Viewer

Length: 1497 bp
ATGAGCAAATCGGAGGTAGTGTTCATCTCAACCCCTGGATCAATCGGAAACCTAGTCCCACTCGTCGAGTTCGCTCAGTTCCTAGTGAACCATGACCCTCGACTCCACGCCACCATCCTCATAATCACCATGCCCCAAAGACCCACCATCAACACTTACATCCAATCCCGCGCCGCCGCTTCAGCCACCACCATCAACTTCCTCCACCTCCCCATCGTAGACCCTCTTACAGAGGATGAGTACCAGTCCTCCATCGCCTACCTTTCCCTACTCATACAAAAAAACAAGCTCCACGTTAAACATGCGCTCACCGAGCTCATATCCTCGACCGAGTCGAACCCAGTTGTTGCGTTTTTCGTGGACATGTTTTGTACGTCCATGATCGACGTCGCCAACGAGCTTGACGTTCCTTGTTACATGTTCTTCGCTTCTCCGGCGACGTTTCTGAACTTCATGTTTCATATTCCGGTCCTGGACGCCGAAATCTCCGACGACTTTGTCGACTTGGATACTGAGTTGACTATACCGGGTTTTGCTAACTCGGTGCCTCCGATGGTGCTGCCTACGGCGCTGTTGAATAAGAAGGGAGATGCGTACGCTTGCTATTTAGCCCATACGGCAAGGTACAAGGAACCCAAGGGTATTGTTGTAAATACGTTCAAGGAATTGGAGCCACACGCGCTTTACACGTTGGCTACGAGTGATTTGCCGCGAGTTCACGCTATTGGGCCGGTTGTTGATCTTAACGGGGTGGCCCAATGGCAGAATCCCGACCGGTACGAGAGCGTGGTGAAGTGGCTCGATGACCAGCCTCCGTCATCGGTGGTGTTGTTGTGCTTTGGGAGCATGGGAAGTCTTAATGGGCCTCAGGTGAGGGAGATTGCATTTGGGCTTGAAAGAGCCGGGTTTCGGTTTTTATGGGCTTTGCGTGAACCGCCCAAGTCCAATGTATACCTACCGACCGACCCCACAAACGTCGACGAGGTATTGCCGGATGGGTTTTTGGAACGGACATGTAAATTGGGCTTAGTGTGCGGGTGGGTCCCACAGGTGAAGATTCTAGCCCACCAAGCGATCGGAGGGTTTGTATCGCATTGCGGGTGGAACTCGATTTTGGAAAGCTTGTGGTATGGGGTACCGATCGCCACGTGGCCGATTTACGCGGAGCAACAAATGAATGCCTTTGAGATGGTGAAGGAATTGGGATTGGCGGTCGAGATTAGGGTGGACTATAGGGAGGGGAGTAAGATTGTGATGGCGGAGGAGGTGGAGAGAAGCATAAAGAGGTTGATGGACGGTGATCACGGAGTGAGGACTAGGGTGAAAGACATGAGAGAGAAGAGTAGGATGGCGTTGATGGAAAATGGGTCTGCATACCAAGCATTAGAAGATTTAATTGAGGAATTATTACCCAAGGAAGGTAACGGCAAAAGAGAGGAAGCGGAAACATTACTTGAGGAGCTACACAACTACACAAGCAGCAGGATAAATCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

499

Amino Acids

55.74

Weight (kDa)

5.07

Isoelectric Point (pI)

36.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 272 - 409 4.5e-21 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 497
AatII GACGTC 1 cut(s) 390
Acc65I GGTACC 1 cut(s) 1135
AccB1I GGYRCC 2 cut(s) 544, 1135
AccI GTMKAC 4 cut(s) 219, 501, 951, 978
AccII CGCG 4 cut(s) 171, 680, 712, 1163
AclWI GGATC 1 cut(s) 46
AcoI YGGCCR 1 cut(s) 1151
AcuI CTGAAG 1 cut(s) 165
AcvI CACGTG 1 cut(s) 1149
AcyI GRCGYC 2 cut(s) 387, 477
AdeI CACNNNGTG 1 cut(s) 1309
AfaI GTAC 6 cut(s) 242, 373, 596, 626, 779, 1137
AfiI CCNNNNNNNGG 2 cut(s) 909, 1418
AflIII ACRYGT 4 cut(s) 363, 417, 687, 1013
AgeI ACCGGT 1 cut(s) 774
AgsI TTSAA 3 cut(s) 577, 661, 896
AjnI CCWGG 2 cut(s) 34, 471
AjuI GAANNNNNNNTTGG 2 cut(s) 1097, 1129
AloI GAACNNNNNNTCC 1 cut(s) 37
AluBI AGCT 5 cut(s) 289, 316, 400, 1122, 1462
AluI AGCT 5 cut(s) 289, 316, 400, 1122, 1462
Alw21I GWGCWC 1 cut(s) 318
AlwI GGATC 1 cut(s) 46
AoxI GGCC 4 cut(s) 728, 753, 863, 1151
ApeKI GCWGC 2 cut(s) 559, 1479
AsiGI ACCGGT 1 cut(s) 774
Asp718I GGTACC 1 cut(s) 1135
AspLEI GCGC 4 cut(s) 173, 307, 571, 682
AspS9I GGNCC 5 cut(s) 469, 728, 754, 863, 1042
AsuC2I CCSGG 2 cut(s) 528, 904
AsuHPI GGTGA 8 cut(s) 118, 301, 802, 883, 1063, 1204, 1310, 1333
AvaII GGWCC 2 cut(s) 469, 1042
AxyI CCTNAGG 1 cut(s) 867
BanI GGYRCC 2 cut(s) 544, 1135
BanII GRGCYC 1 cut(s) 318
BbrPI CACGTG 1 cut(s) 1149
Bbv12I GWGCWC 1 cut(s) 318
BbvI GCAGC 2 cut(s) 546, 1491
BceAI ACGGC 3 cut(s) 582, 633, 1441
BcgI CGANNNNNNTGC 4 cut(s) 541, 575, 688, 722
BciT130I CCWGG 2 cut(s) 36, 473
BciVI GTATCC 1 cut(s) 502
BclI TGATCA 1 cut(s) 1300
BcnI CCSGG 2 cut(s) 528, 904
BfaI CTAG 4 cut(s) 53, 83, 1061, 1317
BfmI CTRYAG 1 cut(s) 1231
BfoI RGCGCY 1 cut(s) 572
BfuI GTATCC 1 cut(s) 502
BglI GCCNNNNNGGC 1 cut(s) 617
BisI GCNGC 5 cut(s) 174, 177, 560, 710, 1480
BlsI GCNGC 5 cut(s) 175, 178, 561, 711, 1481
Bme1390I CCNGG 4 cut(s) 36, 473, 528, 904
Bme18I GGWCC 2 cut(s) 469, 1042
BmgT120I GGNCC 5 cut(s) 469, 728, 754, 863, 1042
BmiI GGNNCC 6 cut(s) 546, 633, 672, 1043, 1044, 1137
BmrFI CCNGG 4 cut(s) 36, 473, 528, 904
BmrI ACTGGG 1 cut(s) 335
BmsI GCATC 1 cut(s) 580
BmuI ACTGGG 1 cut(s) 335
BpuEI CTTGAG 1 cut(s) 1475
BpuMI CCSGG 2 cut(s) 528, 904
BsaAI YACGTR 1 cut(s) 1149
BsaHI GRCGYC 2 cut(s) 387, 477
BsaJI CCNNGG 3 cut(s) 34, 636, 1413
BsaWI WCCGGW 2 cut(s) 466, 774
BsaXI ACNNNNNCTCC 6 cut(s) 5, 35, 233, 263, 1071, 1101
Bsc4I CCNNNNNNNGG 2 cut(s) 909, 1418
Bse118I RCCGGY 2 cut(s) 730, 774
Bse1I ACTGG 2 cut(s) 244, 341
Bse21I CCTNAGG 1 cut(s) 867
Bse3DI GCAATG 1 cut(s) 1093
BseBI CCWGG 2 cut(s) 36, 473
BseDI CCNNGG 3 cut(s) 34, 636, 1413
BseGI GGATG 5 cut(s) 114, 159, 241, 1000, 1353
BseLI CCNNNNNNNGG 2 cut(s) 909, 1418
BseMI GCAATG 1 cut(s) 1093
BseMII CTCAG 3 cut(s) 89, 504, 881
BseNI ACTGG 2 cut(s) 244, 341
BseRI GAGGAG 2 cut(s) 1277, 1472
BseXI GCAGC 2 cut(s) 546, 1491
Bsh1236I CGCG 4 cut(s) 171, 680, 712, 1163
Bsh1285I CGRYCG 6 cut(s) 330, 775, 963, 1077, 1143, 1215
BshFI GGCC 4 cut(s) 730, 755, 865, 1153
BshNI GGYRCC 2 cut(s) 544, 1135
BshTI ACCGGT 1 cut(s) 774
BsiEI CGRYCG 6 cut(s) 330, 775, 963, 1077, 1143, 1215
BsiHKAI GWGCWC 1 cut(s) 318
BsiSI CCGG 7 cut(s) 434, 467, 527, 731, 775, 903, 992
BsiWI CGTACG 1 cut(s) 594
BslFI GGGAC 2 cut(s) 41, 1028
BslI CCNNNNNNNGG 2 cut(s) 909, 1418
BsmFI GGGAC 2 cut(s) 41, 1028
BsmI GAATGC 1 cut(s) 1183
BsnI GGCC 4 cut(s) 730, 755, 865, 1153
Bsp1286I GDGCHC 1 cut(s) 318
Bsp143I GATC 6 cut(s) 38, 381, 739, 1074, 1140, 1300
BspANI GGCC 4 cut(s) 730, 755, 865, 1153
BspCNI CTCAG 3 cut(s) 88, 505, 880
BspFNI CGCG 4 cut(s) 171, 680, 712, 1163
BspLI GGNNCC 6 cut(s) 546, 633, 672, 1043, 1044, 1137
BspPI GGATC 1 cut(s) 46
BspT107I GGYRCC 2 cut(s) 544, 1135
BsrDI GCAATG 1 cut(s) 1093
BsrFI RCCGGY 2 cut(s) 730, 774
BsrI ACTGG 2 cut(s) 244, 341
BssAI RCCGGY 2 cut(s) 730, 774
BssECI CCNNGG 3 cut(s) 34, 636, 1413
BssMI GATC 6 cut(s) 38, 381, 739, 1074, 1140, 1300
BssNAI GTATAC 1 cut(s) 952
BssNI GRCGYC 2 cut(s) 387, 477
BssT1I CCWWGG 2 cut(s) 636, 1413
Bst1107I GTATAC 1 cut(s) 952
Bst2UI CCWGG 2 cut(s) 36, 473
Bst4CI ACNGT 1 cut(s) 1298
Bst6I CTCTTC 1 cut(s) 1334
BstACI GRCGYC 2 cut(s) 387, 477
BstBAI YACGTR 1 cut(s) 1149
BstC8I GCNNGC 1 cut(s) 601
BstDEI CTNAG 4 cut(s) 75, 513, 867, 1027
BstF5I GGATG 5 cut(s) 114, 159, 241, 1000, 1353
BstFNI CGCG 4 cut(s) 171, 680, 712, 1163
BstH2I RGCGCY 1 cut(s) 572
BstHHI GCGC 4 cut(s) 173, 307, 571, 682
BstKTI GATC 6 cut(s) 41, 384, 742, 1077, 1143, 1303
BstMBI GATC 6 cut(s) 38, 381, 739, 1074, 1140, 1300
BstMCI CGRYCG 6 cut(s) 330, 775, 963, 1077, 1143, 1215
BstNI CCWGG 2 cut(s) 36, 473
BstNSI RCATGY 4 cut(s) 305, 367, 421, 1017
BstSCI CCNGG 4 cut(s) 34, 471, 526, 902
BstSFI CTRYAG 1 cut(s) 1231
BstUI CGCG 4 cut(s) 171, 680, 712, 1163
BstV1I GCAGC 2 cut(s) 546, 1491
BstZ17I GTATAC 1 cut(s) 952
Bsu36I CCTNAGG 1 cut(s) 867
BsuI GTATCC 1 cut(s) 502
BsuRI GGCC 4 cut(s) 730, 755, 865, 1153
BtgZI GCGATG 1 cut(s) 238
BtsCI GGATG 5 cut(s) 114, 159, 241, 1000, 1353
Cac8I GCNNGC 1 cut(s) 601
CfoI GCGC 4 cut(s) 173, 307, 571, 682
Cfr10I RCCGGY 2 cut(s) 730, 774
Cfr13I GGNCC 5 cut(s) 469, 728, 754, 863, 1042
CseI GACGC 1 cut(s) 485
Csp6I GTAC 6 cut(s) 241, 372, 595, 625, 778, 1136
CspAI ACCGGT 1 cut(s) 774
CviQI GTAC 6 cut(s) 241, 372, 595, 625, 778, 1136
DdeI CTNAG 4 cut(s) 75, 513, 867, 1027
DpnI GATC 6 cut(s) 40, 383, 741, 1076, 1142, 1302
DpnII GATC 6 cut(s) 38, 381, 739, 1074, 1140, 1300
DraIII CACNNNGTG 1 cut(s) 1309
DrdI GACNNNNNNGTC 1 cut(s) 497
DseDI GACNNNNNNGTC 1 cut(s) 497
EaeI YGGCCR 1 cut(s) 1151
Eam1104I CTCTTC 1 cut(s) 1334
EarI CTCTTC 1 cut(s) 1334
EciI GGCGGA 1 cut(s) 1274
Ecl136II GAGCTC 1 cut(s) 316
Eco130I CCWWGG 2 cut(s) 636, 1413
Eco24I GRGCYC 1 cut(s) 318
Eco47I GGWCC 2 cut(s) 469, 1042
Eco53kI GAGCTC 1 cut(s) 316
Eco57I CTGAAG 1 cut(s) 165
Eco72I CACGTG 1 cut(s) 1149
Eco81I CCTNAGG 1 cut(s) 867
EcoICRI GAGCTC 1 cut(s) 316
EcoO109I RGGNCCY 1 cut(s) 1042
EcoRII CCWGG 2 cut(s) 34, 471
EcoT14I CCWWGG 2 cut(s) 636, 1413
EcoT38I GRGCYC 1 cut(s) 318
ErhI CCWWGG 2 cut(s) 636, 1413
FaqI GGGAC 2 cut(s) 41, 1028
FauI CCCGC 3 cut(s) 176, 1028, 1091
FbaI TGATCA 1 cut(s) 1300
FblI GTMKAC 4 cut(s) 219, 501, 951, 978
Fnu4HI GCNGC 5 cut(s) 174, 177, 560, 710, 1480
FokI GGATG 5 cut(s) 101, 146, 248, 1007, 1360
FriOI GRGCYC 1 cut(s) 318
Fsp4HI GCNGC 5 cut(s) 174, 177, 560, 710, 1480
FspBI CTAG 4 cut(s) 53, 83, 1061, 1317
GlaI GCGC 4 cut(s) 172, 306, 570, 681
GluI GCNGC 5 cut(s) 174, 177, 560, 710, 1480
HaeII RGCGCY 1 cut(s) 572
HaeIII GGCC 4 cut(s) 730, 755, 865, 1153
HapII CCGG 7 cut(s) 434, 467, 527, 731, 775, 903, 992
HgaI GACGC 1 cut(s) 485
HhaI GCGC 4 cut(s) 173, 307, 571, 682
Hin1I GRCGYC 2 cut(s) 387, 477
Hin6I GCGC 4 cut(s) 171, 305, 569, 680
HinP1I GCGC 4 cut(s) 171, 305, 569, 680
HincII GTYRAC 3 cut(s) 502, 519, 979
HindII GTYRAC 3 cut(s) 502, 519, 979
HindIII AAGCTT 1 cut(s) 1120
HinfI GANTC 4 cut(s) 102, 332, 766, 1057
HpaII CCGG 7 cut(s) 434, 467, 527, 731, 775, 903, 992
HphI GGTGA 8 cut(s) 118, 301, 802, 883, 1063, 1204, 1310, 1333
Hpy188I TCNGA 6 cut(s) 13, 47, 447, 490, 552, 1079
Hpy188III TCNNGA 2 cut(s) 770, 1216
Hpy99I CGWCG 7 cut(s) 68, 389, 392, 442, 494, 980, 983
HpyAV CCTTC 3 cut(s) 577, 1189, 1412
HpyCH4III ACNGT 1 cut(s) 1298
HpyCH4IV ACGT 9 cut(s) 294, 374, 387, 405, 440, 656, 689, 975, 1148
HpyCH4V TGCA 2 cut(s) 884, 1373
HpyF3I CTNAG 4 cut(s) 75, 513, 867, 1027
HpySE526I ACGT 9 cut(s) 294, 374, 387, 405, 440, 656, 689, 975, 1148
Hsp92I GRCGYC 2 cut(s) 387, 477
HspAI GCGC 4 cut(s) 171, 305, 569, 680
KflI GGGWCCC 1 cut(s) 1042
KpnI GGTACC 1 cut(s) 1139
Ksp22I TGATCA 1 cut(s) 1300
Kzo9I GATC 6 cut(s) 38, 381, 739, 1074, 1140, 1300
LmnI GCTCC 5 cut(s) 294, 670, 843, 1165, 1459
Lsp1109I GCAGC 2 cut(s) 546, 1491
LweI GCATC 1 cut(s) 580
MaeI CTAG 4 cut(s) 53, 83, 1061, 1317
MaeII ACGT 9 cut(s) 294, 374, 387, 405, 440, 656, 689, 975, 1148
MaeIII GTNAC 2 cut(s) 413, 1421
MalI GATC 6 cut(s) 40, 383, 741, 1076, 1142, 1302
MboI GATC 6 cut(s) 38, 381, 739, 1074, 1140, 1300
MboII GAAGA 4 cut(s) 415, 1066, 1351, 1400
MhlI GDGCHC 1 cut(s) 318
MluCI AATT 5 cut(s) 665, 1019, 1199, 1395, 1403
MlyI GAGTC 2 cut(s) 96, 341
MmeI TCCRAC 1 cut(s) 513
MseI TTAA 4 cut(s) 297, 744, 858, 1394
MspI CCGG 7 cut(s) 434, 467, 527, 731, 775, 903, 992
MspR9I CCNGG 4 cut(s) 36, 473, 528, 904
Mva1269I GAATGC 1 cut(s) 1183
MvaI CCWGG 2 cut(s) 36, 473
MvnI CGCG 4 cut(s) 171, 680, 712, 1163
NciI CCSGG 2 cut(s) 528, 904
NdeII GATC 6 cut(s) 38, 381, 739, 1074, 1140, 1300
NlaIV GGNNCC 6 cut(s) 546, 633, 672, 1043, 1044, 1137
NspI RCATGY 4 cut(s) 305, 367, 421, 1017
PciI ACATGT 3 cut(s) 363, 417, 1013
PcsI WCGNNNNNNNCGW 6 cut(s) 332, 393, 402, 498, 548, 695
PctI GAATGC 1 cut(s) 1183
PfeI GAWTC 2 cut(s) 766, 1057
Pfl23II CGTACG 1 cut(s) 594
PflFI GACNNNGTC 2 cut(s) 331, 497
PfoI TCCNGGA 1 cut(s) 471
PinAI ACCGGT 1 cut(s) 774
PkrI GCNGC 5 cut(s) 175, 178, 561, 711, 1481
Ple19I CGATCG 2 cut(s) 1077, 1143
PleI GAGTC 2 cut(s) 96, 340
PmaCI CACGTG 1 cut(s) 1149
PmlI CACGTG 1 cut(s) 1149
PpsI GAGTC 2 cut(s) 96, 340
Ppu21I YACGTR 1 cut(s) 1149
PpuMI RGGWCCY 1 cut(s) 1042
PscI ACATGT 3 cut(s) 363, 417, 1013
Psp124BI GAGCTC 1 cut(s) 318
Psp5II RGGWCCY 1 cut(s) 1042
Psp6I CCWGG 2 cut(s) 34, 471
PspCI CACGTG 1 cut(s) 1149
PspGI CCWGG 2 cut(s) 34, 471
PspLI CGTACG 1 cut(s) 594
PspN4I GGNNCC 6 cut(s) 546, 633, 672, 1043, 1044, 1137
PspPI GGNCC 5 cut(s) 469, 728, 754, 863, 1042
PspPPI RGGWCCY 1 cut(s) 1042
PsyI GACNNNGTC 2 cut(s) 331, 497
PvuI CGATCG 2 cut(s) 1077, 1143
RsaI GTAC 6 cut(s) 242, 373, 596, 626, 779, 1137
RsaNI GTAC 6 cut(s) 241, 372, 595, 625, 778, 1136
SacI GAGCTC 1 cut(s) 318
SalI GTCGAC 2 cut(s) 500, 977
SaqAI TTAA 4 cut(s) 297, 744, 858, 1394
SatI GCNGC 5 cut(s) 174, 177, 560, 710, 1480
Sau3AI GATC 6 cut(s) 38, 381, 739, 1074, 1140, 1300
Sau96I GGNCC 5 cut(s) 469, 728, 754, 863, 1042
SchI GAGTC 2 cut(s) 96, 341
ScrFI CCNGG 4 cut(s) 36, 473, 528, 904
SduI GDGCHC 1 cut(s) 318
SfaNI GCATC 1 cut(s) 580
SfcI CTRYAG 1 cut(s) 1231
SgrDI CGTCGACG 1 cut(s) 977
SinI GGWCC 2 cut(s) 469, 1042
SmlI CTYRAG 1 cut(s) 1454
SmoI CTYRAG 1 cut(s) 1454
Sse9I AATT 5 cut(s) 665, 1019, 1199, 1395, 1403
SspMI CTAG 4 cut(s) 53, 83, 1061, 1317
SstI GAGCTC 1 cut(s) 318
StyD4I CCNGG 4 cut(s) 34, 471, 526, 902
StyI CCWWGG 2 cut(s) 636, 1413
TaaI ACNGT 1 cut(s) 1298
TaiI ACGT 9 cut(s) 297, 377, 390, 408, 443, 659, 692, 978, 1151
TaqII GACCGA 2 cut(s) 344, 977
TasI AATT 5 cut(s) 665, 1019, 1199, 1395, 1403
TauI GCSGC 3 cut(s) 176, 179, 712
TfiI GAWTC 2 cut(s) 766, 1057
Tru1I TTAA 4 cut(s) 297, 744, 858, 1394
Tru9I TTAA 4 cut(s) 297, 744, 858, 1394
TseI GCWGC 2 cut(s) 559, 1479
TspDTI ATGAA 4 cut(s) 13, 442, 449, 1190
TspGWI ACGGA 3 cut(s) 804, 1024, 1320
Tth111I GACNNNGTC 2 cut(s) 331, 497
VpaK11BI GGWCC 2 cut(s) 469, 1042
XceI RCATGY 4 cut(s) 305, 367, 421, 1017
XmiI GTMKAC 4 cut(s) 219, 501, 951, 978
XspI CTAG 4 cut(s) 53, 83, 1061, 1317
ZraI GACGTC 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.