Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7967648.1

Orthogroup ID

OG0002688

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 383

Gene Structure 382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7967648.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 382 bp

ctggagtcgcatgcccttctttctctcagttctgatggtaagatccctccggtgtatccggtgggacccatactcaaggtgaagagcgatgaaaacaatgaccaagttgattcgaagcagtcgaagcagaagtctgatatcttgaaatggctcgatgatcagcctccgtcgtctgtagtatttctgtgcttcgggagtatgggaagcttcagtgaagaccaggtgaaagagattgcctgcgcattggagcatggagggtttcggttcttgtggtccctacgtcagcctccaccaaagggaacgattggaatgcccagcgactatgccgatcacacaggggtgttacctgaagggtttcttgatcgaacggctggggtcggaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008194 GO:0008300 GO:0009056 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0033993 GO:0035251 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046345 GO:0046395 GO:0046527 GO:0050896 GO:0071704 GO:0072329 GO:0080043 GO:0080044 GO:0080046 GO:0097305 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

127

Amino Acids

13.79

Weight (kDa)

5.03

Isoelectric Point (pI)

51.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02620 FvH4_2g02630 FvH4_3g12970 FvH4_3g12970 FvH4_3g17180 FvH4_3g17181
malus_domestica	MD05G1246700.v1.1
prunus_persica	Prupe.4G117900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0153371 RchiOBHm_Chr5g0021081 RchiOBHm_Chr5g0021091 RchiOBHm_Chr5g0021101
rosa_laevigata	RLG00000032582 RLG00000032583 RLG00000032584 RLG00000032587
rosa_multiflora	Rmu_co7967648.1_g000001 Rmu_co8022450.1_g000001 Rmu_co8209284.1_g000001 Rmu_co8295101.1_g000001 Rmu_sc0002467.1_g000005 Rmu_sc0041861.1_g000001 Rmu_ssc0000244.1_g000020 Rmu_ssc0000244.1_g000027 Rmu_ssc0000244.1_g000028
rosa_roxburghii	Rroxscaffold_1G00057340 Rroxscaffold_1G00057380
rosa_rugosa	Rorug05G0064300 Rorug05G0064400 Rorug05G0064500 Rorug05G0064700
rosa_samantha	Rh2AG501400 Rh5CG166400 Rh5CG166500 Rh5CG166600 Rh5DG153100 Rh5DG153300 Rh5DG153400
rosa_wichuraiana	Rw5G013670 Rw5G013680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	241
AclWI	GGATC	1 cut(s)	37
AcuI	CTGAAG	2 cut(s)	193, 369
AfiI	CCNNNNNNNGG	1 cut(s)	296
AgsI	TTSAA	1 cut(s)	145
AjnI	CCWGG	1 cut(s)	219
AleI	CACNNNNGTG	1 cut(s)	338
AluBI	AGCT	1 cut(s)	207
AluI	AGCT	1 cut(s)	207
AlwI	GGATC	1 cut(s)	37
ArsI	GACNNNNNNTTYG	2 cut(s)	116, 148
Asp700I	GAANNNNTTC	1 cut(s)	354
AspLEI	GCGC	1 cut(s)	242
AspS9I	GGNCC	2 cut(s)	65, 273
AsuHPI	GGTGA	2 cut(s)	91, 235
AsuII	TTCGAA	1 cut(s)	113
AvaII	GGWCC	2 cut(s)	65, 273
BbsI	GAAGAC	1 cut(s)	222
BccI	CCATC	1 cut(s)	29
BcgI	CGANNNNNNTGC	2 cut(s)	292, 326
BciT130I	CCWGG	1 cut(s)	221
BciVI	GTATCC	1 cut(s)	66
BclI	TGATCA	1 cut(s)	157
BfmI	CTRYAG	1 cut(s)	174
BfuI	GTATCC	1 cut(s)	66
Bme1390I	CCNGG	1 cut(s)	221
Bme18I	GGWCC	2 cut(s)	65, 273
BmgT120I	GGNCC	2 cut(s)	65, 273
BmiI	GGNNCC	3 cut(s)	66, 67, 275
BmrFI	CCNGG	1 cut(s)	221
BpiI	GAAGAC	1 cut(s)	222
BpmI	CTGGAG	1 cut(s)	23
Bpu14I	TTCGAA	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	59
BsaWI	WCCGGW	2 cut(s)	49, 58
Bsc4I	CCNNNNNNNGG	1 cut(s)	296
BseBI	CCWGG	1 cut(s)	221
BseLI	CCNNNNNNNGG	1 cut(s)	296
BseMII	CTCAG	1 cut(s)	40
BseYI	CCCAGC	2 cut(s)	314, 371
BsiSI	CCGG	2 cut(s)	50, 59
BslFI	GGGAC	2 cut(s)	78, 259
BslI	CCNNNNNNNGG	1 cut(s)	296
BsmFI	GGGAC	2 cut(s)	78, 259
BsmI	GAATGC	1 cut(s)	315
Bsp119I	TTCGAA	1 cut(s)	113
Bsp143I	GATC	4 cut(s)	42, 157, 328, 361
BspCNI	CTCAG	1 cut(s)	39
BspLI	GGNNCC	3 cut(s)	66, 67, 275
BspPI	GGATC	1 cut(s)	37
BspQI	GCTCTTC	1 cut(s)	77
BspT104I	TTCGAA	1 cut(s)	113
BssMI	GATC	4 cut(s)	42, 157, 328, 361
Bst2UI	CCWGG	1 cut(s)	221
Bst6I	CTCTTC	1 cut(s)	77
BstBI	TTCGAA	1 cut(s)	113
BstC8I	GCNNGC	2 cut(s)	12, 238
BstDEI	CTNAG	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	242
BstKTI	GATC	4 cut(s)	45, 160, 331, 364
BstMBI	GATC	4 cut(s)	42, 157, 328, 361
BstMWI	GCNNNNNNNGC	1 cut(s)	124
BstNI	CCWGG	1 cut(s)	221
BstNSI	RCATGY	1 cut(s)	14
BstSCI	CCNGG	1 cut(s)	219
BstSFI	CTRYAG	1 cut(s)	174
BstV2I	GAAGAC	1 cut(s)	222
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
BsuI	GTATCC	1 cut(s)	66
BtgZI	GCGATG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	217
Cac8I	GCNNGC	2 cut(s)	12, 238
CfoI	GCGC	1 cut(s)	242
Cfr13I	GGNCC	2 cut(s)	65, 273
CsiI	ACCWGGT	1 cut(s)	219
CviAII	CATG	2 cut(s)	11, 251
CviJI	RGCY	5 cut(s)	151, 163, 207, 286, 371
CviKI_1	RGCY	5 cut(s)	151, 163, 207, 286, 371
DdeI	CTNAG	1 cut(s)	26
DpnI	GATC	4 cut(s)	44, 159, 330, 363
DpnII	GATC	4 cut(s)	42, 157, 328, 361
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
Eco32I	GATATC	1 cut(s)	139
Eco47I	GGWCC	2 cut(s)	65, 273
Eco57I	CTGAAG	2 cut(s)	193, 369
EcoO109I	RGGNCCY	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	219
EcoRV	GATATC	1 cut(s)	139
FaeI	CATG	2 cut(s)	14, 254
FaiI	YATR	5 cut(s)	12, 71, 200, 252, 324
FalI	AAGNNNNNCTT	2 cut(s)	342, 374
FaqI	GGGAC	2 cut(s)	78, 259
FatI	CATG	2 cut(s)	10, 250
FbaI	TGATCA	1 cut(s)	157
FspI	TGCGCA	1 cut(s)	241
GlaI	GCGC	1 cut(s)	241
GsaI	CCCAGC	2 cut(s)	318, 375
GsuI	CTGGAG	1 cut(s)	23
HapII	CCGG	2 cut(s)	50, 59
HhaI	GCGC	1 cut(s)	242
Hin1II	CATG	2 cut(s)	14, 254
Hin6I	GCGC	1 cut(s)	240
HinP1I	GCGC	1 cut(s)	240
HindIII	AAGCTT	1 cut(s)	205
HinfI	GANTC	2 cut(s)	5, 110
HpaII	CCGG	2 cut(s)	50, 59
HphI	GGTGA	2 cut(s)	91, 235
Hpy188I	TCNGA	3 cut(s)	34, 136, 380
Hpy188III	TCNNGA	3 cut(s)	142, 193, 359
Hpy99I	CGWCG	1 cut(s)	172
HpyAV	CCTTC	2 cut(s)	26, 344
HpyCH4IV	ACGT	1 cut(s)	280
HpyF10VI	GCNNNNNNNGC	1 cut(s)	124
HpyF3I	CTNAG	1 cut(s)	26
HpySE526I	ACGT	1 cut(s)	280
Hsp92II	CATG	2 cut(s)	14, 254
HspAI	GCGC	1 cut(s)	240
KflI	GGGWCCC	1 cut(s)	65
Ksp22I	TGATCA	1 cut(s)	157
Kzo9I	GATC	4 cut(s)	42, 157, 328, 361
LguI	GCTCTTC	1 cut(s)	77
LmnI	GCTCC	1 cut(s)	247
LpnPI	CCDG	9 cut(s)	63, 72, 206, 233, 250, 321, 328, 357, 360
MabI	ACCWGGT	1 cut(s)	219
MaeII	ACGT	1 cut(s)	280
MaeIII	GTNAC	1 cut(s)	342
MalI	GATC	4 cut(s)	44, 159, 330, 363
MboI	GATC	4 cut(s)	42, 157, 328, 361
MboII	GAAGA	2 cut(s)	94, 227
MflI	RGATCY	1 cut(s)	42
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	358
MnlI	CCTC	4 cut(s)	57, 174, 248, 297
MroXI	GAANNNNTTC	1 cut(s)	354
MslI	CAYNNNNRTG	1 cut(s)	338
MspI	CCGG	2 cut(s)	50, 59
MspR9I	CCNGG	1 cut(s)	221
Mva1269I	GAATGC	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	1 cut(s)	124
NdeII	GATC	4 cut(s)	42, 157, 328, 361
NlaIII	CATG	2 cut(s)	14, 254
NlaIV	GGNNCC	3 cut(s)	66, 67, 275
NsbI	TGCGCA	1 cut(s)	241
NspI	RCATGY	1 cut(s)	14
NspV	TTCGAA	1 cut(s)	113
OliI	CACNNNNGTG	1 cut(s)	338
PaeI	GCATGC	1 cut(s)	14
PciSI	GCTCTTC	1 cut(s)	77
PcsI	WCGNNNNNNNCGW	1 cut(s)	119
PctI	GAATGC	1 cut(s)	315
PdmI	GAANNNNTTC	1 cut(s)	354
PfeI	GAWTC	1 cut(s)	110
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PpuMI	RGGWCCY	1 cut(s)	65
Psp5II	RGGWCCY	1 cut(s)	65
Psp6I	CCWGG	1 cut(s)	219
PspFI	CCCAGC	2 cut(s)	314, 371
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	3 cut(s)	66, 67, 275
PspPI	GGNCC	2 cut(s)	65, 273
PspPPI	RGGWCCY	1 cut(s)	65
PsuI	RGATCY	1 cut(s)	42
RseI	CAYNNNNRTG	1 cut(s)	338
SapI	GCTCTTC	1 cut(s)	77
Sau3AI	GATC	4 cut(s)	42, 157, 328, 361
Sau96I	GGNCC	2 cut(s)	65, 273
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	221
SetI	ASST	5 cut(s)	81, 209, 225, 283, 349
SexAI	ACCWGGT	1 cut(s)	219
SfcI	CTRYAG	1 cut(s)	174
SfuI	TTCGAA	1 cut(s)	113
SinI	GGWCC	2 cut(s)	65, 273
SmiMI	CAYNNNNRTG	1 cut(s)	338
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
SphI	GCATGC	1 cut(s)	14
StyD4I	CCNGG	1 cut(s)	219
TaiI	ACGT	1 cut(s)	283
TaqI	TCGA	4 cut(s)	113, 122, 153, 364
TfiI	GAWTC	1 cut(s)	110
TscAI	CASTG	1 cut(s)	217
TspDTI	ATGAA	1 cut(s)	105
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	1 cut(s)	217
VpaK11BI	GGWCC	2 cut(s)	65, 273
XceI	RCATGY	1 cut(s)	14
XmnI	GAANNNNTTC	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.