Rw5G013670

UDP-glucose flavonoid 3-O-glucosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0002688
Physical Location & Seq
Forward (+)
16168992 .. 16170697
1706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G013670.1

Sequence Viewer

Length: 1293 bp
ATGCCCCAAAGACCCACCATCGATACTTACATCCAGTCCCGCGCCGCCGCGTCAGCCACCAGCATCAACTTCCTCCACCTCCCCATTGTAGAACCACTTGCAGGGGATGAGAACCAGTCCTATCTCGCCTACCTTTCCCTACTCATTGAAAAACACAAGCCCCACGTAAAGCATGCTATAGCCGACCTCATGTCCTCTGCCGAGTCAAACCGAGTTGTTGCGTTTTTCGTGGACATGTTTTGTACGTCCATGATCGACGTTGCCAACGAGCTTGAGATTCCTTGTTATATGTATTTCGCTTCTCCAGCGACGTTTCTGAGCTTCATGTTTCATATTCCTGTCTTGGACGCCGAAATCTCCGACGACTTTGGCGATTTGGATACTGAGTTGACTATACCGGGTTTTGCTAACTCGGTGCCTCCGCTGGTGTTGCCTACGGCGCTGTTGAGTAAGAAGGGGGATACGTACCCTTGCTATTTGTCCCATACGGCAAGGTACAAGGAACCCAAGGGTATTGTCGTCAATACGTTCAAGGAATTGGAGCCACACGCGCTTTGCTCGTTGTCTACGAGTCACGTGCCGCGAGTTCACGCTATTGGGCCGGTTGTTGATCTTAATGGGCCGGCCCAATGGCAGGATCCCGACCTGTATGAGAGCGTGGTGAAGTGGCTCGATGACCAGCCTCCGTCGTCTGTGGTGCTGTTGTGCTTTGGGAGCATGGGGAGTCTTAGTGGGCCTCAGGTGAGGGAGATAGCATTTGGGCTGGAAAGGGCTGGGTTTCGGTTCTTATGGGCATTGCGAGAACCGCCCAAGTCCAGTGTGTACCTTCCGAGCGACCCCGCAAACGTAGACGAGGTATTGCCGGATGGGTTTTTGGAGCGGACTTGTAAATTCGGTTTAGTGTGCGGGTGGGTCCCTCAAGTGAAGATTCTGGCCCACCAAGCGATCGGAGGGTTCGTATCGCATTGCGGGTGGAACTCGATTTTGGAGAGCTTGTGGTATGGGGTACCGATTGCCACGTGGCCTATTTACTCGGAGCAACAAATGAACGCGTTTGAGATGGTGAAGGAATTGGGATTGGCAGTGGAGATTAGGCTGGACTATAGGGAGGGAAGTGATTTGGTGTTGGCGGGGGAGGTGGAGAGAAGCATAAAGAGCTTGATGGAGGGTGATCATGTGGTGAGGGCTAGGGTGAAGGACATGAGAGAGAAGAGCAGGATGGCATTGATGGAAAATGGGTCTGCATACAAAGCACTGGAAGGTTTAATTGAGGAACTAATGCCCAAGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

430

Amino Acids

47.78

Weight (kDa)

5.05

Isoelectric Point (pI)

38.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 230 - 368 1.6e-20 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1006
AccB1I GGYRCC 2 cut(s) 415, 1006
AccBSI CCGCTC 1 cut(s) 880
AccI GTMKAC 2 cut(s) 566, 849
AccII CGCG 5 cut(s) 42, 50, 551, 583, 1052
AclWI GGATC 2 cut(s) 632, 645
AcsI RAATTY 1 cut(s) 890
AcvI CACGTG 2 cut(s) 577, 1020
AcyI GRCGYC 1 cut(s) 348
AfaI GTAC 5 cut(s) 244, 467, 497, 824, 1008
AfiI CCNNNNNNNGG 2 cut(s) 101, 634
AflIII ACRYGT 2 cut(s) 234, 1050
AgsI TTSAA 2 cut(s) 149, 532
AhdI GACNNNNNGTC 1 cut(s) 190
AjuI GAANNNNNNNTTGG 2 cut(s) 968, 1000
AluBI AGCT 4 cut(s) 271, 321, 993, 1158
AluI AGCT 4 cut(s) 271, 321, 993, 1158
AlwI GGATC 2 cut(s) 632, 645
AoxI GGCC 6 cut(s) 599, 620, 624, 734, 933, 1022
ApoI RAATTY 1 cut(s) 890
Asp718I GGTACC 1 cut(s) 1006
AspLEI GCGC 3 cut(s) 44, 442, 553
AspS9I GGNCC 6 cut(s) 599, 620, 625, 734, 913, 934
AsuC2I CCSGG 1 cut(s) 399
AsuHPI GGTGA 6 cut(s) 673, 754, 1075, 1181, 1192, 1204
AvaII GGWCC 1 cut(s) 913
AxyI CCTNAGG 1 cut(s) 738
BamHI GGATCC 1 cut(s) 637
BanI GGYRCC 2 cut(s) 415, 1006
BbrPI CACGTG 2 cut(s) 577, 1020
BccI CCATC 6 cut(s) 26, 860, 1054, 1156, 1213, 1222
BceAI ACGGC 2 cut(s) 453, 504
BcgI CGANNNNNNTGC 2 cut(s) 559, 593
BciVI GTATCC 2 cut(s) 373, 454
BclI TGATCA 1 cut(s) 1171
BcnI CCSGG 1 cut(s) 399
BfaI CTAG 1 cut(s) 1188
BfmI CTRYAG 2 cut(s) 177, 1102
BfoI RGCGCY 1 cut(s) 443
BfuI GTATCC 2 cut(s) 373, 454
BglII AGATCT 1 cut(s) 1287
BisI GCNGC 3 cut(s) 45, 48, 581
BlsI GCNGC 3 cut(s) 46, 49, 582
Bme1390I CCNGG 1 cut(s) 399
Bme18I GGWCC 1 cut(s) 913
BmeRI GACNNNNNGTC 1 cut(s) 190
BmgT120I GGNCC 6 cut(s) 599, 620, 625, 734, 913, 934
BmiI GGNNCC 7 cut(s) 417, 504, 543, 639, 914, 915, 1008
BmrFI CCNGG 1 cut(s) 399
BmsI GCATC 1 cut(s) 72
BpmI CTGGAG 1 cut(s) 288
BpuEI CTTGAG 2 cut(s) 293, 903
BpuMI CCSGG 1 cut(s) 399
Bsa29I ATCGAT 1 cut(s) 21
BsaAI YACGTR 4 cut(s) 166, 465, 577, 1020
BsaHI GRCGYC 1 cut(s) 348
BsaJI CCNNGG 1 cut(s) 507
BsaXI ACNNNNNCTCC 6 cut(s) 715, 745, 942, 972, 980, 1010
Bsc4I CCNNNNNNNGG 2 cut(s) 101, 634
Bse118I RCCGGY 2 cut(s) 601, 622
Bse1I ACTGG 4 cut(s) 34, 115, 816, 1260
Bse21I CCTNAGG 1 cut(s) 738
Bse3DI GCAATG 2 cut(s) 794, 964
BseCI ATCGAT 1 cut(s) 21
BseDI CCNNGG 1 cut(s) 507
BseGI GGATG 4 cut(s) 30, 112, 871, 1224
BseLI CCNNNNNNNGG 2 cut(s) 101, 634
BseMI GCAATG 2 cut(s) 794, 964
BseMII CTCAG 3 cut(s) 308, 375, 752
BseNI ACTGG 4 cut(s) 34, 115, 816, 1260
BseYI CCCAGC 1 cut(s) 773
Bsh1236I CGCG 5 cut(s) 42, 50, 551, 583, 1052
Bsh1285I CGRYCG 1 cut(s) 948
BshFI GGCC 6 cut(s) 601, 622, 626, 736, 935, 1024
BshNI GGYRCC 2 cut(s) 415, 1006
BshVI ATCGAT 1 cut(s) 21
BsiEI CGRYCG 1 cut(s) 948
BsiSI CCGG 4 cut(s) 398, 602, 623, 863
BslFI GGGAC 3 cut(s) 22, 466, 899
BslI CCNNNNNNNGG 2 cut(s) 101, 634
BsmFI GGGAC 3 cut(s) 22, 466, 899
BsnI GGCC 6 cut(s) 601, 622, 626, 736, 935, 1024
Bsp143I GATC 6 cut(s) 252, 610, 637, 945, 1171, 1287
BspANI GGCC 6 cut(s) 601, 622, 626, 736, 935, 1024
BspCNI CTCAG 3 cut(s) 309, 376, 751
BspDI ATCGAT 1 cut(s) 21
BspFNI CGCG 5 cut(s) 42, 50, 551, 583, 1052
BspLI GGNNCC 7 cut(s) 417, 504, 543, 639, 914, 915, 1008
BspPI GGATC 2 cut(s) 632, 645
BspQI GCTCTTC 1 cut(s) 1205
BspT107I GGYRCC 2 cut(s) 415, 1006
BsrBI CCGCTC 1 cut(s) 880
BsrDI GCAATG 2 cut(s) 794, 964
BsrFI RCCGGY 2 cut(s) 601, 622
BsrI ACTGG 4 cut(s) 34, 115, 816, 1260
BssAI RCCGGY 2 cut(s) 601, 622
BssECI CCNNGG 1 cut(s) 507
BssMI GATC 6 cut(s) 252, 610, 637, 945, 1171, 1287
BssNI GRCGYC 1 cut(s) 348
BssT1I CCWWGG 1 cut(s) 507
Bst6I CTCTTC 1 cut(s) 1205
BstACI GRCGYC 1 cut(s) 348
BstBAI YACGTR 4 cut(s) 166, 465, 577, 1020
BstC8I GCNNGC 2 cut(s) 174, 624
BstDEI CTNAG 4 cut(s) 317, 384, 728, 738
BstF5I GGATG 4 cut(s) 30, 112, 871, 1224
BstFNI CGCG 5 cut(s) 42, 50, 551, 583, 1052
BstH2I RGCGCY 1 cut(s) 443
BstHHI GCGC 3 cut(s) 44, 442, 553
BstKTI GATC 6 cut(s) 255, 613, 640, 948, 1174, 1290
BstMBI GATC 6 cut(s) 252, 610, 637, 945, 1171, 1287
BstMCI CGRYCG 1 cut(s) 948
BstNSI RCATGY 2 cut(s) 176, 238
BstSCI CCNGG 1 cut(s) 397
BstSFI CTRYAG 2 cut(s) 177, 1102
BstSNI TACGTA 1 cut(s) 465
BstUI CGCG 5 cut(s) 42, 50, 551, 583, 1052
BstX2I RGATCY 2 cut(s) 637, 1287
BstYI RGATCY 2 cut(s) 637, 1287
Bsu15I ATCGAT 1 cut(s) 21
Bsu36I CCTNAGG 1 cut(s) 738
BsuI GTATCC 2 cut(s) 373, 454
BsuRI GGCC 6 cut(s) 601, 622, 626, 736, 935, 1024
BsuTUI ATCGAT 1 cut(s) 21
BtsCI GGATG 4 cut(s) 30, 112, 871, 1224
BtsI GCAGTG 1 cut(s) 1089
BtsIMutI CAGTG 3 cut(s) 823, 1089, 1253
Cac8I GCNNGC 2 cut(s) 174, 624
CfoI GCGC 3 cut(s) 44, 442, 553
Cfr10I RCCGGY 2 cut(s) 601, 622
Cfr13I GGNCC 6 cut(s) 599, 620, 625, 734, 913, 934
ClaI ATCGAT 1 cut(s) 21
CseI GACGC 2 cut(s) 39, 356
Csp6I GTAC 5 cut(s) 243, 466, 496, 823, 1007
CviAII CATG 8 cut(s) 173, 190, 235, 250, 325, 718, 1175, 1201
CviQI GTAC 5 cut(s) 243, 466, 496, 823, 1007
DdeI CTNAG 4 cut(s) 317, 384, 728, 738
DpnI GATC 6 cut(s) 254, 612, 639, 947, 1173, 1289
DpnII GATC 6 cut(s) 252, 610, 637, 945, 1171, 1287
DriI GACNNNNNGTC 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 1205
Eam1105I GACNNNNNGTC 1 cut(s) 190
EarI CTCTTC 1 cut(s) 1205
Eco105I TACGTA 1 cut(s) 465
Eco130I CCWWGG 1 cut(s) 507
Eco47I GGWCC 1 cut(s) 913
Eco72I CACGTG 2 cut(s) 577, 1020
Eco81I CCTNAGG 1 cut(s) 738
EcoO109I RGGNCCY 1 cut(s) 913
EcoT14I CCWWGG 1 cut(s) 507
ErhI CCWWGG 1 cut(s) 507
FaeI CATG 8 cut(s) 176, 193, 238, 253, 328, 721, 1178, 1204
FaqI GGGAC 3 cut(s) 22, 466, 899
FatI CATG 8 cut(s) 172, 189, 234, 249, 324, 717, 1174, 1200
FauI CCCGC 5 cut(s) 47, 847, 899, 962, 1123
FbaI TGATCA 1 cut(s) 1171
FblI GTMKAC 2 cut(s) 566, 849
Fnu4HI GCNGC 3 cut(s) 45, 48, 581
FokI GGATG 4 cut(s) 17, 119, 878, 1231
FseI GGCCGGCC 1 cut(s) 626
Fsp4HI GCNGC 3 cut(s) 45, 48, 581
FspBI CTAG 1 cut(s) 1188
GlaI GCGC 3 cut(s) 43, 441, 552
GluI GCNGC 3 cut(s) 45, 48, 581
GsaI CCCAGC 1 cut(s) 777
GsuI CTGGAG 1 cut(s) 288
HaeII RGCGCY 1 cut(s) 443
HaeIII GGCC 6 cut(s) 601, 622, 626, 736, 935, 1024
HapII CCGG 4 cut(s) 398, 602, 623, 863
HgaI GACGC 2 cut(s) 39, 356
HhaI GCGC 3 cut(s) 44, 442, 553
Hin1I GRCGYC 1 cut(s) 348
Hin1II CATG 8 cut(s) 176, 193, 238, 253, 328, 721, 1178, 1204
Hin6I GCGC 3 cut(s) 42, 440, 551
HinP1I GCGC 3 cut(s) 42, 440, 551
HincII GTYRAC 1 cut(s) 390
HindII GTYRAC 1 cut(s) 390
HinfI GANTC 5 cut(s) 203, 277, 571, 724, 928
HpaII CCGG 4 cut(s) 398, 602, 623, 863
HphI GGTGA 6 cut(s) 673, 754, 1075, 1181, 1192, 1204
Hpy166II GTNNAC 6 cut(s) 232, 390, 567, 589, 823, 850
Hpy188I TCNGA 6 cut(s) 318, 361, 831, 950, 1036, 1292
Hpy188III TCNNGA 1 cut(s) 641
Hpy8I GTNNAC 6 cut(s) 232, 390, 567, 589, 823, 850
Hpy99I CGWCG 4 cut(s) 260, 313, 365, 691
HpyAV CCTTC 5 cut(s) 448, 836, 1060, 1189, 1253
HpyCH4IV ACGT 9 cut(s) 165, 245, 258, 311, 464, 527, 576, 846, 1019
HpyCH4V TGCA 2 cut(s) 101, 1244
HpyF3I CTNAG 4 cut(s) 317, 384, 728, 738
HpySE526I ACGT 9 cut(s) 165, 245, 258, 311, 464, 527, 576, 846, 1019
Hsp92I GRCGYC 1 cut(s) 348
Hsp92II CATG 8 cut(s) 176, 193, 238, 253, 328, 721, 1178, 1204
HspAI GCGC 3 cut(s) 42, 440, 551
KflI GGGWCCC 1 cut(s) 913
KpnI GGTACC 1 cut(s) 1010
KroI GCCGGC 1 cut(s) 622
KroNI GCCGGC 1 cut(s) 624
Ksp22I TGATCA 1 cut(s) 1171
Kzo9I GATC 6 cut(s) 252, 610, 637, 945, 1171, 1287
LguI GCTCTTC 1 cut(s) 1205
LmnI GCTCC 4 cut(s) 541, 714, 877, 1036
LweI GCATC 1 cut(s) 72
MaeI CTAG 1 cut(s) 1188
MaeII ACGT 9 cut(s) 165, 245, 258, 311, 464, 527, 576, 846, 1019
MaeIII GTNAC 1 cut(s) 572
MalI GATC 6 cut(s) 254, 612, 639, 947, 1173, 1289
MbiI CCGCTC 1 cut(s) 880
MboI GATC 6 cut(s) 252, 610, 637, 945, 1171, 1287
MboII GAAGA 2 cut(s) 937, 1222
MflI RGATCY 2 cut(s) 637, 1287
MluCI AATT 4 cut(s) 536, 890, 1070, 1266
MluI ACGCGT 1 cut(s) 1050
MlyI GAGTC 3 cut(s) 212, 580, 733
MmeI TCCRAC 1 cut(s) 384
MroNI GCCGGC 1 cut(s) 622
MseI TTAA 2 cut(s) 615, 1265
MspA1I CMGCKG 1 cut(s) 424
MspI CCGG 4 cut(s) 398, 602, 623, 863
MspR9I CCNGG 1 cut(s) 399
MvnI CGCG 5 cut(s) 42, 50, 551, 583, 1052
NaeI GCCGGC 1 cut(s) 624
NciI CCSGG 1 cut(s) 399
NdeII GATC 6 cut(s) 252, 610, 637, 945, 1171, 1287
NgoMIV GCCGGC 1 cut(s) 622
NlaIII CATG 8 cut(s) 176, 193, 238, 253, 328, 721, 1178, 1204
NlaIV GGNNCC 7 cut(s) 417, 504, 543, 639, 914, 915, 1008
NmeAIII GCCGAG 1 cut(s) 226
NmuCI GTSAC 1 cut(s) 572
NspI RCATGY 2 cut(s) 176, 238
PaeI GCATGC 1 cut(s) 176
PciI ACATGT 1 cut(s) 234
PciSI GCTCTTC 1 cut(s) 1205
PcsI WCGNNNNNNNCGW 4 cut(s) 264, 369, 566, 954
PdiI GCCGGC 1 cut(s) 624
PfeI GAWTC 2 cut(s) 277, 928
PkrI GCNGC 3 cut(s) 46, 49, 582
Ple19I CGATCG 1 cut(s) 948
PleI GAGTC 3 cut(s) 211, 579, 732
PmaCI CACGTG 2 cut(s) 577, 1020
PmlI CACGTG 2 cut(s) 577, 1020
PpsI GAGTC 3 cut(s) 211, 579, 732
Ppu21I YACGTR 4 cut(s) 166, 465, 577, 1020
PpuMI RGGWCCY 1 cut(s) 913
PscI ACATGT 1 cut(s) 234
Psp5II RGGWCCY 1 cut(s) 913
PspCI CACGTG 2 cut(s) 577, 1020
PspFI CCCAGC 1 cut(s) 773
PspN4I GGNNCC 7 cut(s) 417, 504, 543, 639, 914, 915, 1008
PspPI GGNCC 6 cut(s) 599, 620, 625, 734, 913, 934
PspPPI RGGWCCY 1 cut(s) 913
PsuI RGATCY 2 cut(s) 637, 1287
PvuI CGATCG 1 cut(s) 948
RigI GGCCGGCC 1 cut(s) 626
RsaI GTAC 5 cut(s) 244, 467, 497, 824, 1008
RsaNI GTAC 5 cut(s) 243, 466, 496, 823, 1007
SapI GCTCTTC 1 cut(s) 1205
SaqAI TTAA 2 cut(s) 615, 1265
SatI GCNGC 3 cut(s) 45, 48, 581
Sau3AI GATC 6 cut(s) 252, 610, 637, 945, 1171, 1287
Sau96I GGNCC 6 cut(s) 599, 620, 625, 734, 913, 934
SchI GAGTC 3 cut(s) 212, 580, 733
ScrFI CCNGG 1 cut(s) 399
SfaNI GCATC 1 cut(s) 72
SfcI CTRYAG 2 cut(s) 177, 1102
SinI GGWCC 1 cut(s) 913
SmlI CTYRAG 2 cut(s) 272, 918
SmoI CTYRAG 2 cut(s) 272, 918
SnaBI TACGTA 1 cut(s) 465
SphI GCATGC 1 cut(s) 176
Sse9I AATT 4 cut(s) 536, 890, 1070, 1266
SspMI CTAG 1 cut(s) 1188
StyD4I CCNGG 1 cut(s) 397
StyI CCWWGG 1 cut(s) 507
TaiI ACGT 9 cut(s) 168, 248, 261, 314, 467, 530, 579, 849, 1022
TaqI TCGA 4 cut(s) 21, 255, 672, 980
TasI AATT 4 cut(s) 536, 890, 1070, 1266
TauI GCSGC 3 cut(s) 47, 50, 583
TfiI GAWTC 2 cut(s) 277, 928
Tru1I TTAA 2 cut(s) 615, 1265
Tru9I TTAA 2 cut(s) 615, 1265
TscAI CASTG 3 cut(s) 823, 1089, 1260
TseFI GTSAC 1 cut(s) 572
Tsp45I GTSAC 1 cut(s) 572
TspDTI ATGAA 3 cut(s) 313, 320, 1061
TspGWI ACGGA 1 cut(s) 675
TspRI CASTG 3 cut(s) 823, 1089, 1260
VpaK11BI GGWCC 1 cut(s) 913
XapI RAATTY 1 cut(s) 890
XceI RCATGY 2 cut(s) 176, 238
XmiI GTMKAC 2 cut(s) 566, 849
XspI CTAG 1 cut(s) 1188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.