Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000244.1

Orthogroup ID

OG0002688

Physical Location & Seq

Genomic Coordinates Forward (+)

148866 .. 150284

Gene Structure 1419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000244.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

atgagcaaatcggaggtggtgttcatctcaaccccccaaatcggaaacctagtcccactcgtcgagttcgctcagctcctagtcaaccatgaccctcgattccacgccaccatcctcatcatcaccatgccccaaagacccaccgtcaacacttacatccaatcccgcgccgccgcgtcagccaccagcatcaacttcctccacctccccatcgtagatccacttgcagaggatgagtaccagtcctccatcgcctacctttccctacttatacaaaaacacaagccccacgtaaagcatgctatagccgacctcatgtcctctgccgagtcaaaccgagttgttgcgtttttcgtggacatgttttgtacgtccatgatcgacgttggcaacgagcttgagattccttgttatatgtatttcgcttctccggcgacgtttctgagcttcatgtttcatattccggtcttggacgccgaaatttcaaccgactttggcgacttggatactgagttgactataccgggttttgctaactcggtgcctccactggtcttgccgacggcgctgttgagtaagaagggggatacgtacccttcctatttatcccatacggcaaggtacaaggaacccaagggtattgttgtcaatacgttcaaggaattggagccacacgcgcttagctcgctggctgcgagtgatgtgccgcgagttcacgctattgggccgattcttgatcttaatgggccgggccaatggcaggatccggaccggtacgagagcgtggtgaagtggcttgatgaccagcctccatcgtctgtggtgctgttgtgctttgggagcatggggagtcttagtgggcctcaggtgagggagatagcatttgggctggaaagggctgggtttcggttcttatgggcattgcgtgaaccgcccaagtccgctgtgtacctcccaagcgaccccgcaaacgtagacgaggtattgccacacgggtttttagaacggacatgcaaattgggcttggtgtgcgggtgggttccgcaagtgaagattctggcccaccaagcgatcggagggttcatatcgcattgcgggtggaactctattttggagagcttgtggtatggggtaccgattgccacttggccgatttacgcagaacaacaaatgaacgcgtttgagatggtgaaggaattgggattggcagtagagattaggctggactatagggagggaagtaatttggtgatggcggaggaggtggagagaagcataaagagcttgatggacggtgatcatgtggtgaggactagggtgaaagacatgagagagaagagtaggggagcattgatggaaaatgggtctgcatacaaagcactagaaggtttaattgaggagctaatgcccaagatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

472

Amino Acids

52.4

Weight (kDa)

5.28

Isoelectric Point (pI)

37.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02620 FvH4_2g02630 FvH4_3g12970 FvH4_3g12970 FvH4_3g17180 FvH4_3g17181
malus_domestica	MD05G1246700.v1.1
prunus_persica	Prupe.4G117900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0153371 RchiOBHm_Chr5g0021081 RchiOBHm_Chr5g0021091 RchiOBHm_Chr5g0021101
rosa_laevigata	RLG00000032582 RLG00000032583 RLG00000032584 RLG00000032587
rosa_multiflora	Rmu_co7967648.1_g000001 Rmu_co8022450.1_g000001 Rmu_co8209284.1_g000001 Rmu_co8295101.1_g000001 Rmu_sc0002467.1_g000005 Rmu_sc0041861.1_g000001 Rmu_ssc0000244.1_g000020 Rmu_ssc0000244.1_g000027 Rmu_ssc0000244.1_g000028
rosa_roxburghii	Rroxscaffold_1G00057340 Rroxscaffold_1G00057380
rosa_rugosa	Rorug05G0064300 Rorug05G0064400 Rorug05G0064500 Rorug05G0064700
rosa_samantha	Rh2AG501400 Rh5CG166400 Rh5CG166500 Rh5CG166600 Rh5DG153100 Rh5DG153300 Rh5DG153400
rosa_wichuraiana	Rw5G013670 Rw5G013680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1132
AccB1I	GGYRCC	2 cut(s)	541, 1132
AccI	GTMKAC	1 cut(s)	975
AccII	CGCG	5 cut(s)	168, 176, 677, 709, 1178
AccIII	TCCGGA	1 cut(s)	766
AclWI	GGATC	3 cut(s)	212, 758, 771
AcoI	YGGCCR	1 cut(s)	1148
AcsI	RAATTY	1 cut(s)	480
AcyI	GRCGYC	1 cut(s)	474
AfaI	GTAC	7 cut(s)	239, 370, 593, 623, 776, 950, 1134
AfiI	CCNNNNNNNGG	2 cut(s)	41, 760
AflIII	ACRYGT	2 cut(s)	360, 1176
AgeI	ACCGGT	1 cut(s)	771
AgsI	TTSAA	2 cut(s)	486, 658
AhdI	GACNNNNNGTC	2 cut(s)	143, 316
AjuI	GAANNNNNNNTTGG	2 cut(s)	1094, 1126
AloI	GAACNNNNNNTCC	1 cut(s)	37
AluBI	AGCT	7 cut(s)	76, 397, 447, 684, 1119, 1284, 1402
AluI	AGCT	7 cut(s)	76, 397, 447, 684, 1119, 1284, 1402
AlwI	GGATC	3 cut(s)	212, 758, 771
Aor13HI	TCCGGA	1 cut(s)	766
AoxI	GGCC	6 cut(s)	725, 746, 751, 860, 1059, 1148
ApeKI	GCWGC	1 cut(s)	692
ApoI	RAATTY	1 cut(s)	480
AsiGI	ACCGGT	1 cut(s)	771
Asp718I	GGTACC	1 cut(s)	1132
AspLEI	GCGC	3 cut(s)	170, 568, 679
AspS9I	GGNCC	6 cut(s)	725, 746, 751, 769, 860, 1060
AsuC2I	CCSGG	2 cut(s)	525, 750
AsuHPI	GGTGA	8 cut(s)	115, 799, 880, 1201, 1261, 1307, 1318, 1330
AvaII	GGWCC	1 cut(s)	769
AxyI	CCTNAGG	1 cut(s)	864
BamHI	GGATCC	1 cut(s)	763
BanI	GGYRCC	2 cut(s)	541, 1132
BbvI	GCAGC	1 cut(s)	679
BccI	CCATC	8 cut(s)	119, 218, 257, 820, 1180, 1246, 1282, 1348
BceAI	ACGGC	2 cut(s)	579, 630
BcgI	CGANNNNNNTGC	2 cut(s)	685, 719
BciVI	GTATCC	2 cut(s)	499, 580
BclI	TGATCA	1 cut(s)	1297
BcnI	CCSGG	2 cut(s)	525, 750
BfaI	CTAG	4 cut(s)	50, 80, 1314, 1382
BfmI	CTRYAG	2 cut(s)	303, 1228
BfoI	RGCGCY	1 cut(s)	569
BfuI	GTATCC	2 cut(s)	499, 580
BisI	GCNGC	4 cut(s)	171, 174, 693, 707
BlpI	GCTNAGC	2 cut(s)	72, 680
BlsI	GCNGC	4 cut(s)	172, 175, 694, 708
Bme1390I	CCNGG	2 cut(s)	525, 750
Bme18I	GGWCC	1 cut(s)	769
BmeRI	GACNNNNNGTC	2 cut(s)	143, 316
BmgT120I	GGNCC	6 cut(s)	725, 746, 751, 769, 860, 1060
BmiI	GGNNCC	6 cut(s)	543, 630, 669, 765, 1041, 1134
BmrFI	CCNGG	2 cut(s)	525, 750
BmsI	GCATC	1 cut(s)	198
Bpu1102I	GCTNAGC	2 cut(s)	72, 680
BpuEI	CTTGAG	1 cut(s)	419
BpuMI	CCSGG	2 cut(s)	525, 750
BsaAI	YACGTR	2 cut(s)	292, 591
BsaHI	GRCGYC	1 cut(s)	474
BsaJI	CCNNGG	1 cut(s)	633
BsaWI	WCCGGW	3 cut(s)	463, 766, 771
BsaXI	ACNNNNNCTCC	8 cut(s)	5, 35, 230, 260, 841, 871, 1106, 1136
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 760
Bse118I	RCCGGY	1 cut(s)	771
Bse1I	ACTGG	2 cut(s)	241, 555
Bse21I	CCTNAGG	1 cut(s)	864
Bse3DI	GCAATG	2 cut(s)	920, 1090
BseAI	TCCGGA	1 cut(s)	766
BseDI	CCNNGG	1 cut(s)	633
BseGI	GGATG	3 cut(s)	111, 156, 238
BseLI	CCNNNNNNNGG	2 cut(s)	41, 760
BseMI	GCAATG	2 cut(s)	920, 1090
BseMII	CTCAG	4 cut(s)	86, 434, 501, 878
BseNI	ACTGG	2 cut(s)	241, 555
BseRI	GAGGAG	2 cut(s)	1274, 1412
BseXI	GCAGC	1 cut(s)	679
BseYI	CCCAGC	1 cut(s)	899
Bsh1236I	CGCG	5 cut(s)	168, 176, 677, 709, 1178
Bsh1285I	CGRYCG	1 cut(s)	1074
BshFI	GGCC	6 cut(s)	727, 748, 753, 862, 1061, 1150
BshNI	GGYRCC	2 cut(s)	541, 1132
BshTI	ACCGGT	1 cut(s)	771
BsiEI	CGRYCG	1 cut(s)	1074
BsiSI	CCGG	6 cut(s)	431, 464, 524, 749, 767, 772
BslFI	GGGAC	1 cut(s)	38
BslI	CCNNNNNNNGG	2 cut(s)	41, 760
BsmFI	GGGAC	1 cut(s)	38
BsnI	GGCC	6 cut(s)	727, 748, 753, 862, 1061, 1150
Bsp13I	TCCGGA	1 cut(s)	766
Bsp143I	GATC	6 cut(s)	217, 378, 736, 763, 1071, 1297
Bsp1720I	GCTNAGC	2 cut(s)	72, 680
BspANI	GGCC	6 cut(s)	727, 748, 753, 862, 1061, 1150
BspCNI	CTCAG	4 cut(s)	85, 435, 502, 877
BspEI	TCCGGA	1 cut(s)	766
BspFNI	CGCG	5 cut(s)	168, 176, 677, 709, 1178
BspLI	GGNNCC	6 cut(s)	543, 630, 669, 765, 1041, 1134
BspPI	GGATC	3 cut(s)	212, 758, 771
BspT107I	GGYRCC	2 cut(s)	541, 1132
BsrDI	GCAATG	2 cut(s)	920, 1090
BsrFI	RCCGGY	1 cut(s)	771
BsrI	ACTGG	2 cut(s)	241, 555
BssAI	RCCGGY	1 cut(s)	771
BssECI	CCNNGG	1 cut(s)	633
BssMI	GATC	6 cut(s)	217, 378, 736, 763, 1071, 1297
BssNI	GRCGYC	1 cut(s)	474
BssT1I	CCWWGG	1 cut(s)	633
Bst4CI	ACNGT	2 cut(s)	145, 1295
Bst6I	CTCTTC	1 cut(s)	1331
BstACI	GRCGYC	1 cut(s)	474
BstBAI	YACGTR	2 cut(s)	292, 591
BstC8I	GCNNGC	3 cut(s)	300, 686, 690
BstDEI	CTNAG	6 cut(s)	72, 443, 510, 680, 854, 864
BstF5I	GGATG	3 cut(s)	111, 156, 238
BstFNI	CGCG	5 cut(s)	168, 176, 677, 709, 1178
BstH2I	RGCGCY	1 cut(s)	569
BstHHI	GCGC	3 cut(s)	170, 568, 679
BstKTI	GATC	6 cut(s)	220, 381, 739, 766, 1074, 1300
BstMBI	GATC	6 cut(s)	217, 378, 736, 763, 1071, 1297
BstMCI	CGRYCG	1 cut(s)	1074
BstNSI	RCATGY	3 cut(s)	302, 364, 1014
BstSCI	CCNGG	2 cut(s)	523, 748
BstSFI	CTRYAG	2 cut(s)	303, 1228
BstSNI	TACGTA	1 cut(s)	591
BstUI	CGCG	5 cut(s)	168, 176, 677, 709, 1178
BstV1I	GCAGC	1 cut(s)	679
BstX2I	RGATCY	2 cut(s)	217, 763
BstYI	RGATCY	2 cut(s)	217, 763
Bsu36I	CCTNAGG	1 cut(s)	864
BsuI	GTATCC	2 cut(s)	499, 580
BsuRI	GGCC	6 cut(s)	727, 748, 753, 862, 1061, 1150
BtgZI	GCGATG	1 cut(s)	235
BtsCI	GGATG	3 cut(s)	111, 156, 238
BtsIMutI	CAGTG	1 cut(s)	548
Cac8I	GCNNGC	3 cut(s)	300, 686, 690
CfoI	GCGC	3 cut(s)	170, 568, 679
Cfr10I	RCCGGY	1 cut(s)	771
Cfr13I	GGNCC	6 cut(s)	725, 746, 751, 769, 860, 1060
CpoI	CGGWCCG	1 cut(s)	769
CseI	GACGC	2 cut(s)	165, 482
Csp6I	GTAC	7 cut(s)	238, 369, 592, 622, 775, 949, 1133
CspAI	ACCGGT	1 cut(s)	771
CspCI	CAANNNNNGTGG	2 cut(s)	537, 572
CspI	CGGWCCG	1 cut(s)	769
CviQI	GTAC	7 cut(s)	238, 369, 592, 622, 775, 949, 1133
DdeI	CTNAG	6 cut(s)	72, 443, 510, 680, 854, 864
DpnI	GATC	6 cut(s)	219, 380, 738, 765, 1073, 1299
DpnII	GATC	6 cut(s)	217, 378, 736, 763, 1071, 1297
DriI	GACNNNNNGTC	2 cut(s)	143, 316
EaeI	YGGCCR	1 cut(s)	1148
Eam1104I	CTCTTC	1 cut(s)	1331
Eam1105I	GACNNNNNGTC	2 cut(s)	143, 316
EarI	CTCTTC	1 cut(s)	1331
EciI	GGCGGA	1 cut(s)	1271
Eco105I	TACGTA	1 cut(s)	591
Eco130I	CCWWGG	1 cut(s)	633
Eco47I	GGWCC	1 cut(s)	769
Eco81I	CCTNAGG	1 cut(s)	864
EcoT14I	CCWWGG	1 cut(s)	633
ErhI	CCWWGG	1 cut(s)	633
FaqI	GGGAC	1 cut(s)	38
FauI	CCCGC	4 cut(s)	173, 973, 1025, 1088
FbaI	TGATCA	1 cut(s)	1297
FblI	GTMKAC	1 cut(s)	975
Fnu4HI	GCNGC	4 cut(s)	171, 174, 693, 707
FokI	GGATG	3 cut(s)	98, 143, 245
Fsp4HI	GCNGC	4 cut(s)	171, 174, 693, 707
FspBI	CTAG	4 cut(s)	50, 80, 1314, 1382
GlaI	GCGC	3 cut(s)	169, 567, 678
GluI	GCNGC	4 cut(s)	171, 174, 693, 707
GsaI	CCCAGC	1 cut(s)	903
HaeII	RGCGCY	1 cut(s)	569
HaeIII	GGCC	6 cut(s)	727, 748, 753, 862, 1061, 1150
HapII	CCGG	6 cut(s)	431, 464, 524, 749, 767, 772
HgaI	GACGC	2 cut(s)	165, 482
HhaI	GCGC	3 cut(s)	170, 568, 679
Hin1I	GRCGYC	1 cut(s)	474
Hin6I	GCGC	3 cut(s)	168, 566, 677
HinP1I	GCGC	3 cut(s)	168, 566, 677
HincII	GTYRAC	3 cut(s)	85, 148, 516
HindII	GTYRAC	3 cut(s)	85, 148, 516
HinfI	GANTC	6 cut(s)	99, 329, 403, 730, 850, 1054
HpaII	CCGG	6 cut(s)	431, 464, 524, 749, 767, 772
HphI	GGTGA	8 cut(s)	115, 799, 880, 1201, 1261, 1307, 1318, 1330
Hpy166II	GTNNAC	8 cut(s)	85, 148, 358, 516, 715, 929, 949, 976
Hpy188I	TCNGA	4 cut(s)	13, 44, 444, 1076
Hpy188III	TCNNGA	2 cut(s)	734, 767
Hpy8I	GTNNAC	8 cut(s)	85, 148, 358, 516, 715, 929, 949, 976
Hpy99I	CGWCG	4 cut(s)	65, 386, 439, 565
HpyAV	CCTTC	4 cut(s)	574, 606, 1186, 1379
HpyCH4III	ACNGT	2 cut(s)	145, 1295
HpyCH4IV	ACGT	7 cut(s)	291, 371, 384, 437, 590, 653, 972
HpyCH4V	TGCA	3 cut(s)	227, 1014, 1370
HpyF3I	CTNAG	6 cut(s)	72, 443, 510, 680, 854, 864
HpySE526I	ACGT	7 cut(s)	291, 371, 384, 437, 590, 653, 972
Hsp92I	GRCGYC	1 cut(s)	474
HspAI	GCGC	3 cut(s)	168, 566, 677
Kpn2I	TCCGGA	1 cut(s)	766
KpnI	GGTACC	1 cut(s)	1136
Ksp22I	TGATCA	1 cut(s)	1297
Kzo9I	GATC	6 cut(s)	217, 378, 736, 763, 1071, 1297
LmnI	GCTCC	5 cut(s)	81, 667, 840, 1346, 1399
Lsp1109I	GCAGC	1 cut(s)	679
LweI	GCATC	1 cut(s)	198
MaeI	CTAG	4 cut(s)	50, 80, 1314, 1382
MaeII	ACGT	7 cut(s)	291, 371, 384, 437, 590, 653, 972
MalI	GATC	6 cut(s)	219, 380, 738, 765, 1073, 1299
MboI	GATC	6 cut(s)	217, 378, 736, 763, 1071, 1297
MboII	GAAGA	2 cut(s)	1063, 1348
MflI	RGATCY	2 cut(s)	217, 763
MluCI	AATT	6 cut(s)	480, 662, 1016, 1196, 1243, 1392
MluI	ACGCGT	1 cut(s)	1176
MlyI	GAGTC	2 cut(s)	338, 859
MroI	TCCGGA	1 cut(s)	766
MseI	TTAA	2 cut(s)	741, 1391
MslI	CAYNNNNRTG	1 cut(s)	125
MspA1I	CMGCKG	1 cut(s)	944
MspI	CCGG	6 cut(s)	431, 464, 524, 749, 767, 772
MspR9I	CCNGG	2 cut(s)	525, 750
MvnI	CGCG	5 cut(s)	168, 176, 677, 709, 1178
NciI	CCSGG	2 cut(s)	525, 750
NdeII	GATC	6 cut(s)	217, 378, 736, 763, 1071, 1297
NlaIV	GGNNCC	6 cut(s)	543, 630, 669, 765, 1041, 1134
NmeAIII	GCCGAG	1 cut(s)	352
NspI	RCATGY	3 cut(s)	302, 364, 1014
PaeI	GCATGC	1 cut(s)	302
PciI	ACATGT	1 cut(s)	360
PcsI	WCGNNNNNNNCGW	2 cut(s)	390, 692
PfeI	GAWTC	4 cut(s)	99, 403, 730, 1054
PinAI	ACCGGT	1 cut(s)	771
PkrI	GCNGC	4 cut(s)	172, 175, 694, 708
Ple19I	CGATCG	1 cut(s)	1074
PleI	GAGTC	2 cut(s)	337, 858
PpsI	GAGTC	2 cut(s)	337, 858
Ppu21I	YACGTR	2 cut(s)	292, 591
PscI	ACATGT	1 cut(s)	360
PspFI	CCCAGC	1 cut(s)	899
PspN4I	GGNNCC	6 cut(s)	543, 630, 669, 765, 1041, 1134
PspPI	GGNCC	6 cut(s)	725, 746, 751, 769, 860, 1060
PsuI	RGATCY	2 cut(s)	217, 763
PvuI	CGATCG	1 cut(s)	1074
RsaI	GTAC	7 cut(s)	239, 370, 593, 623, 776, 950, 1134
RsaNI	GTAC	7 cut(s)	238, 369, 592, 622, 775, 949, 1133
RseI	CAYNNNNRTG	1 cut(s)	125
Rsr2I	CGGWCCG	1 cut(s)	769
RsrII	CGGWCCG	1 cut(s)	769
SaqAI	TTAA	2 cut(s)	741, 1391
SatI	GCNGC	4 cut(s)	171, 174, 693, 707
Sau3AI	GATC	6 cut(s)	217, 378, 736, 763, 1071, 1297
Sau96I	GGNCC	6 cut(s)	725, 746, 751, 769, 860, 1060
SchI	GAGTC	2 cut(s)	338, 859
ScrFI	CCNGG	2 cut(s)	525, 750
SfaNI	GCATC	1 cut(s)	198
SfcI	CTRYAG	2 cut(s)	303, 1228
SinI	GGWCC	1 cut(s)	769
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
SnaBI	TACGTA	1 cut(s)	591
SphI	GCATGC	1 cut(s)	302
Sse9I	AATT	6 cut(s)	480, 662, 1016, 1196, 1243, 1392
SspMI	CTAG	4 cut(s)	50, 80, 1314, 1382
StyD4I	CCNGG	2 cut(s)	523, 748
StyI	CCWWGG	1 cut(s)	633
TaaI	ACNGT	2 cut(s)	145, 1295
TaiI	ACGT	7 cut(s)	294, 374, 387, 440, 593, 656, 975
TaqI	TCGA	3 cut(s)	63, 97, 381
TasI	AATT	6 cut(s)	480, 662, 1016, 1196, 1243, 1392
TauI	GCSGC	3 cut(s)	173, 176, 709
TfiI	GAWTC	4 cut(s)	99, 403, 730, 1054
Tru1I	TTAA	2 cut(s)	741, 1391
Tru9I	TTAA	2 cut(s)	741, 1391
TscAI	CASTG	1 cut(s)	555
TseI	GCWGC	1 cut(s)	692
TspDTI	ATGAA	5 cut(s)	13, 439, 446, 1072, 1187
TspGWI	ACGGA	1 cut(s)	1021
TspRI	CASTG	1 cut(s)	555
VpaK11BI	GGWCC	1 cut(s)	769
XapI	RAATTY	1 cut(s)	480
XceI	RCATGY	3 cut(s)	302, 364, 1014
XmiI	GTMKAC	1 cut(s)	975
XspI	CTAG	4 cut(s)	50, 80, 1314, 1382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.