Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002688

Physical Location & Seq

Genomic Coordinates Forward (+)

10878343 .. 10879390

Gene Structure 1048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g17181.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGATTGATGTGGCTAAGGAACTAGAGGTTCCTTCTTACTTGTTCTTCACTTCCCCAGCTGGGTTTCTAGGGTTCATGCTTCATTTGCCAACCCTAGACAAAGAAACAACCACGACTGAGTTTGGTGACTTTAGTAGTGAGCTGGTGATACCGAGTTTTGTTAATCCGGTACCCAAGCAAGTGTTACCTTTGGTGATGCTCAAAAGAAAAGGAGATGGGTACTTTTGGTTTTTGCATCATGCAAATAGGTATAGAGAAACAAAGGGCATTATCGTGAATACATTTGACGAACTTGAACCATATGCACTTAATGTTGTTTCTGATGGTCGAGGTCCGCCAGTTTATCCGGTTGGACCAGTCGTTGATGTCACCGGACCGGATGACCGGTACTCGGAGAAGGTTGGTCATGATACCATCATGAAATGGCTAGATGATCAACCTTCATCTTCTGTGGTATTTGTGTGCTTTGGAAGCATGGGAAGTCTTACTGGACCTAAAGTAAGAAAGCTAGCGATTGGGCTTGAATGGGCCAAGGTTCGTTTCTTGTGGTCCTTGCGTGAGCCGCCCAAGGCATTAGGCCTTTCAAGCAAGTATATGGATCTCGAGAAAGCGGTCGATGACCTTTTAGAACGAATTAAGTGTTGGGATGGGCTTGAGAGTGCATGGTACGGCGTACCAATTGCTACATGGCCTATATATGCCGAGCAACAAATGAATGCGTTTGAGATGGTGAAAGAGTTAGAATTAGCGGTAGGAATTAAGATCGAGCATAGAGATTACGACGTTTTAGTAACAGCGGAGGAGGTAGAGAGAGCAGTAACATGCTTAATGGACGGTGAGGATCCTGTGAAGAGAAAGGCTAAAGAGATGAAAGAAAAGAGTAGAAAGGCTGTAATGGAAAATGGATCATCATTTACATCCTTGGCACGCTTGATTGACGACATAATGACCAATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

320

Amino Acids

36.04

Weight (kDa)

5.1

Isoelectric Point (pI)

29.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02620 FvH4_2g02630 FvH4_3g12970 FvH4_3g12970 FvH4_3g17180 FvH4_3g17181
malus_domestica	MD05G1246700.v1.1
prunus_persica	Prupe.4G117900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0153371 RchiOBHm_Chr5g0021081 RchiOBHm_Chr5g0021091 RchiOBHm_Chr5g0021101
rosa_laevigata	RLG00000032582 RLG00000032583 RLG00000032584 RLG00000032587
rosa_multiflora	Rmu_co7967648.1_g000001 Rmu_co8022450.1_g000001 Rmu_co8209284.1_g000001 Rmu_co8295101.1_g000001 Rmu_sc0002467.1_g000005 Rmu_sc0041861.1_g000001 Rmu_ssc0000244.1_g000020 Rmu_ssc0000244.1_g000027 Rmu_ssc0000244.1_g000028
rosa_roxburghii	Rroxscaffold_1G00057340 Rroxscaffold_1G00057380
rosa_rugosa	Rorug05G0064300 Rorug05G0064400 Rorug05G0064500 Rorug05G0064700
rosa_samantha	Rh2AG501400 Rh5CG166400 Rh5CG166500 Rh5CG166600 Rh5DG153100 Rh5DG153300 Rh5DG153400
rosa_wichuraiana	Rw5G013670 Rw5G013680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	169
AccB1I	GGYRCC	1 cut(s)	169
AciI	CCGC	5 cut(s)	335, 563, 611, 749, 797
AclWI	GGATC	4 cut(s)	606, 836, 849, 913
AfaI	GTAC	5 cut(s)	171, 221, 389, 668, 675
AfiI	CCNNNNNNNGG	2 cut(s)	60, 391
AgeI	ACCGGT	1 cut(s)	384
AgsI	TTSAA	3 cut(s)	296, 524, 585
AjuI	GAANNNNNNNTTGG	4 cut(s)	524, 556, 625, 657
AluBI	AGCT	3 cut(s)	59, 142, 508
AluI	AGCT	3 cut(s)	59, 142, 508
AlwI	GGATC	4 cut(s)	606, 836, 849, 913
Ama87I	CYCGRG	1 cut(s)	602
AoxI	GGCC	3 cut(s)	528, 577, 689
AsiGI	ACCGGT	1 cut(s)	384
Asp718I	GGTACC	1 cut(s)	169
AspS9I	GGNCC	6 cut(s)	332, 353, 374, 491, 528, 549
AsuHPI	GGTGA	6 cut(s)	137, 157, 205, 361, 742, 848
AsuNHI	GCTAGC	1 cut(s)	508
AvaI	CYCGRG	1 cut(s)	602
AvaII	GGWCC	5 cut(s)	332, 353, 374, 491, 549
BamHI	GGATCC	1 cut(s)	841
BanI	GGYRCC	1 cut(s)	169
BccI	CCATC	5 cut(s)	209, 317, 422, 641, 721
BceAI	ACGGC	1 cut(s)	685
BclI	TGATCA	1 cut(s)	433
BfaI	CTAG	5 cut(s)	23, 68, 95, 428, 509
BisI	GCNGC	1 cut(s)	563
BlsI	GCNGC	1 cut(s)	564
Bme18I	GGWCC	5 cut(s)	332, 353, 374, 491, 549
BmeT110I	CYCGRG	1 cut(s)	602
BmgT120I	GGNCC	6 cut(s)	332, 353, 374, 491, 528, 549
BmiI	GGNNCC	3 cut(s)	30, 171, 843
BmsI	GCATC	2 cut(s)	186, 244
BmtI	GCTAGC	1 cut(s)	512
Bpu10I	CCTNAGC	1 cut(s)	15
BpuEI	CTTGAG	1 cut(s)	674
BsaJI	CCNNGG	3 cut(s)	531, 567, 921
BsaWI	WCCGGW	5 cut(s)	166, 346, 371, 376, 384
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 391
Bse118I	RCCGGY	1 cut(s)	384
Bse1I	ACTGG	3 cut(s)	338, 356, 493
BseDI	CCNNGG	3 cut(s)	531, 567, 921
BseGI	GGATG	3 cut(s)	385, 652, 917
BseLI	CCNNNNNNNGG	2 cut(s)	60, 391
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	3 cut(s)	338, 356, 493
BseRI	GAGGAG	1 cut(s)	815
BseYI	CCCAGC	2 cut(s)	55, 59
Bsh1285I	CGRYCG	1 cut(s)	615
BshFI	GGCC	3 cut(s)	530, 579, 691
BshNI	GGYRCC	1 cut(s)	169
BshTI	ACCGGT	1 cut(s)	384
BsiEI	CGRYCG	1 cut(s)	615
BsiHKCI	CYCGRG	1 cut(s)	602
BsiSI	CCGG	5 cut(s)	167, 347, 372, 377, 385
BslI	CCNNNNNNNGG	2 cut(s)	60, 391
BsmI	GAATGC	1 cut(s)	721
BsnI	GGCC	3 cut(s)	530, 579, 691
BsoBI	CYCGRG	1 cut(s)	602
Bsp143I	GATC	5 cut(s)	433, 598, 762, 841, 905
BspACI	CCGC	5 cut(s)	335, 563, 611, 749, 797
BspANI	GGCC	3 cut(s)	530, 579, 691
BspCNI	CTCAG	1 cut(s)	109
BspHI	TCATGA	2 cut(s)	406, 417
BspLI	GGNNCC	3 cut(s)	30, 171, 843
BspOI	GCTAGC	1 cut(s)	512
BspPI	GGATC	4 cut(s)	606, 836, 849, 913
BspT107I	GGYRCC	1 cut(s)	169
BsrFI	RCCGGY	1 cut(s)	384
BsrI	ACTGG	3 cut(s)	338, 356, 493
BssAI	RCCGGY	1 cut(s)	384
BssECI	CCNNGG	3 cut(s)	531, 567, 921
BssMI	GATC	5 cut(s)	433, 598, 762, 841, 905
BssT1I	CCWWGG	3 cut(s)	531, 567, 921
Bst4CI	ACNGT	1 cut(s)	836
Bst6I	CTCTTC	1 cut(s)	845
BstC8I	GCNNGC	2 cut(s)	510, 928
BstDEI	CTNAG	2 cut(s)	15, 117
BstF5I	GGATG	3 cut(s)	385, 652, 917
BstKTI	GATC	5 cut(s)	436, 601, 765, 844, 908
BstMBI	GATC	5 cut(s)	433, 598, 762, 841, 905
BstMCI	CGRYCG	1 cut(s)	615
BstMWI	GCNNNNNNNGC	4 cut(s)	85, 471, 562, 585
BstNSI	RCATGY	1 cut(s)	825
BstX2I	RGATCY	2 cut(s)	598, 841
BstYI	RGATCY	2 cut(s)	598, 841
BsuRI	GGCC	3 cut(s)	530, 579, 691
BtsCI	GGATG	3 cut(s)	385, 652, 917
Cac8I	GCNNGC	2 cut(s)	510, 928
CciI	TCATGA	2 cut(s)	406, 417
Cfr10I	RCCGGY	1 cut(s)	384
Cfr13I	GGNCC	6 cut(s)	332, 353, 374, 491, 528, 549
CpoI	CGGWCCG	1 cut(s)	374
Csp6I	GTAC	5 cut(s)	170, 220, 388, 667, 674
CspAI	ACCGGT	1 cut(s)	384
CspI	CGGWCCG	1 cut(s)	374
CviAII	CATG	8 cut(s)	76, 239, 407, 418, 475, 663, 687, 822
CviQI	GTAC	5 cut(s)	170, 220, 388, 667, 674
DdeI	CTNAG	2 cut(s)	15, 117
DpnI	GATC	5 cut(s)	435, 600, 764, 843, 907
DpnII	GATC	5 cut(s)	433, 598, 762, 841, 905
Eam1104I	CTCTTC	1 cut(s)	845
EarI	CTCTTC	1 cut(s)	845
EciI	GGCGGA	1 cut(s)	324
Eco130I	CCWWGG	3 cut(s)	531, 567, 921
Eco147I	AGGCCT	1 cut(s)	579
Eco47I	GGWCC	5 cut(s)	332, 353, 374, 491, 549
Eco88I	CYCGRG	1 cut(s)	602
EcoT14I	CCWWGG	3 cut(s)	531, 567, 921
ErhI	CCWWGG	3 cut(s)	531, 567, 921
FaeI	CATG	8 cut(s)	79, 242, 410, 421, 478, 666, 690, 825
FatI	CATG	8 cut(s)	75, 238, 406, 417, 474, 662, 686, 821
FauNDI	CATATG	1 cut(s)	301
FbaI	TGATCA	1 cut(s)	433
Fnu4HI	GCNGC	1 cut(s)	563
FokI	GGATG	3 cut(s)	392, 659, 904
Fsp4HI	GCNGC	1 cut(s)	563
FspBI	CTAG	5 cut(s)	23, 68, 95, 428, 509
GluI	GCNGC	1 cut(s)	563
GsaI	CCCAGC	2 cut(s)	59, 63
HaeIII	GGCC	3 cut(s)	530, 579, 691
HapII	CCGG	5 cut(s)	167, 347, 372, 377, 385
Hin1II	CATG	8 cut(s)	79, 242, 410, 421, 478, 666, 690, 825
HpaII	CCGG	5 cut(s)	167, 347, 372, 377, 385
HphI	GGTGA	6 cut(s)	137, 157, 205, 361, 742, 848
Hpy188I	TCNGA	2 cut(s)	322, 394
Hpy188III	TCNNGA	5 cut(s)	274, 407, 418, 602, 604
Hpy99I	CGWCG	1 cut(s)	785
HpyAV	CCTTC	3 cut(s)	42, 391, 450
HpyCH4III	ACNGT	1 cut(s)	836
HpyCH4IV	ACGT	1 cut(s)	783
HpyCH4V	TGCA	4 cut(s)	235, 242, 305, 662
HpyF10VI	GCNNNNNNNGC	4 cut(s)	85, 471, 562, 585
HpyF3I	CTNAG	2 cut(s)	15, 117
HpySE526I	ACGT	1 cut(s)	783
Hsp92II	CATG	8 cut(s)	79, 242, 410, 421, 478, 666, 690, 825
KpnI	GGTACC	1 cut(s)	173
Ksp22I	TGATCA	1 cut(s)	433
Kzo9I	GATC	5 cut(s)	433, 598, 762, 841, 905
LweI	GCATC	2 cut(s)	186, 244
MaeI	CTAG	5 cut(s)	23, 68, 95, 428, 509
MaeII	ACGT	1 cut(s)	783
MaeIII	GTNAC	5 cut(s)	125, 183, 367, 790, 817
MalI	GATC	5 cut(s)	435, 600, 764, 843, 907
MboI	GATC	5 cut(s)	433, 598, 762, 841, 905
MboII	GAAGA	3 cut(s)	37, 438, 862
MfeI	CAATTG	1 cut(s)	678
MflI	RGATCY	2 cut(s)	598, 841
MluCI	AATT	5 cut(s)	633, 678, 743, 756, 952
MmeI	TCCRAC	1 cut(s)	331
MnlI	CCTC	5 cut(s)	19, 323, 793, 796, 832
MseI	TTAA	5 cut(s)	162, 309, 636, 759, 827
MslI	CAYNNNNRTG	1 cut(s)	272
MspA1I	CMGCKG	2 cut(s)	59, 797
MspI	CCGG	5 cut(s)	167, 347, 372, 377, 385
MunI	CAATTG	1 cut(s)	678
Mva1269I	GAATGC	1 cut(s)	721
MwoI	GCNNNNNNNGC	4 cut(s)	85, 471, 562, 585
NdeI	CATATG	1 cut(s)	301
NdeII	GATC	5 cut(s)	433, 598, 762, 841, 905
NheI	GCTAGC	1 cut(s)	508
NlaIII	CATG	8 cut(s)	79, 242, 410, 421, 478, 666, 690, 825
NlaIV	GGNNCC	3 cut(s)	30, 171, 843
NmeAIII	GCCGAG	1 cut(s)	727
NmuCI	GTSAC	2 cut(s)	125, 367
NspI	RCATGY	1 cut(s)	825
PaeR7I	CTCGAG	1 cut(s)	602
PagI	TCATGA	2 cut(s)	406, 417
PceI	AGGCCT	1 cut(s)	579
PctI	GAATGC	1 cut(s)	721
PinAI	ACCGGT	1 cut(s)	384
PkrI	GCNGC	1 cut(s)	564
PspFI	CCCAGC	2 cut(s)	55, 59
PspN4I	GGNNCC	3 cut(s)	30, 171, 843
PspPI	GGNCC	6 cut(s)	332, 353, 374, 491, 528, 549
PsuI	RGATCY	2 cut(s)	598, 841
PvuII	CAGCTG	1 cut(s)	59
RsaI	GTAC	5 cut(s)	171, 221, 389, 668, 675
RsaNI	GTAC	5 cut(s)	170, 220, 388, 667, 674
RseI	CAYNNNNRTG	1 cut(s)	272
Rsr2I	CGGWCCG	1 cut(s)	374
RsrII	CGGWCCG	1 cut(s)	374
SaqAI	TTAA	5 cut(s)	162, 309, 636, 759, 827
SatI	GCNGC	1 cut(s)	563
Sau3AI	GATC	5 cut(s)	433, 598, 762, 841, 905
Sau96I	GGNCC	6 cut(s)	332, 353, 374, 491, 528, 549
SfaNI	GCATC	2 cut(s)	186, 244
Sfr274I	CTCGAG	1 cut(s)	602
SinI	GGWCC	5 cut(s)	332, 353, 374, 491, 549
SlaI	CTCGAG	1 cut(s)	602
SmiMI	CAYNNNNRTG	1 cut(s)	272
SmlI	CTYRAG	2 cut(s)	602, 653
SmoI	CTYRAG	2 cut(s)	602, 653
Sse9I	AATT	5 cut(s)	633, 678, 743, 756, 952
SseBI	AGGCCT	1 cut(s)	579
SsiI	CCGC	5 cut(s)	335, 563, 611, 749, 797
SspMI	CTAG	5 cut(s)	23, 68, 95, 428, 509
StuI	AGGCCT	1 cut(s)	579
StyI	CCWWGG	3 cut(s)	531, 567, 921
TaaI	ACNGT	1 cut(s)	836
TaiI	ACGT	1 cut(s)	786
TaqI	TCGA	4 cut(s)	328, 603, 615, 765
TasI	AATT	5 cut(s)	633, 678, 743, 756, 952
TauI	GCSGC	1 cut(s)	565
Tru1I	TTAA	5 cut(s)	162, 309, 636, 759, 827
Tru9I	TTAA	5 cut(s)	162, 309, 636, 759, 827
TseFI	GTSAC	2 cut(s)	125, 367
Tsp45I	GTSAC	2 cut(s)	125, 367
TspDTI	ATGAA	6 cut(s)	64, 71, 432, 434, 728, 884
VpaK11BI	GGWCC	5 cut(s)	332, 353, 374, 491, 549
XceI	RCATGY	1 cut(s)	825
XcmI	CCANNNNNNNNNTGG	1 cut(s)	684
XhoI	CTCGAG	1 cut(s)	602
XspI	CTAG	5 cut(s)	23, 68, 95, 428, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.