FvH4_3g17180

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0002688
Physical Location & Seq
Forward (+)
10877929 .. 10878147
219 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g17180.t1

Sequence Viewer

Length: 219 bp
ATGGAATTAGAACCAAACACTAAAGAAAGAGTGATGGTGGTGATCATTCCCAGCCCAGGTATAGGTCACTTGGTCCCCATGATCGAGTTTGCACGACAGATTACCAATCGCGACGATCGATTTTCAGTACTGATCCCCATCATTCCGGCACCTAATATGCTCATGGTCAACCAATATGCAAAGTCCCGAGCCGAAGCCTACGCTGCCAATAATATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

73

Amino Acids

8.11

Weight (kDa)

6.55

Isoelectric Point (pI)

43.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 148
AccII CGCG 1 cut(s) 111
AclWI GGATC 1 cut(s) 127
AfaI GTAC 1 cut(s) 129
AfiI CCNNNNNNNGG 2 cut(s) 56, 62
AjnI CCWGG 1 cut(s) 55
AlwI GGATC 1 cut(s) 127
Ama87I CYCGRG 1 cut(s) 186
ApeKI GCWGC 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 73
AsuHPI GGTGA 1 cut(s) 52
AvaI CYCGRG 1 cut(s) 186
AvaII GGWCC 1 cut(s) 73
BanI GGYRCC 1 cut(s) 148
BbvI GCAGC 1 cut(s) 190
BccI CCATC 2 cut(s) 28, 146
BciT130I CCWGG 1 cut(s) 57
BclI TGATCA 1 cut(s) 42
BfaI CTAG 1 cut(s) 217
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
BmcAI AGTACT 1 cut(s) 129
Bme1390I CCNGG 1 cut(s) 57
Bme18I GGWCC 1 cut(s) 73
BmeT110I CYCGRG 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 73
BmiI GGNNCC 2 cut(s) 75, 150
BmrFI CCNGG 1 cut(s) 57
Bsa29I ATCGAT 1 cut(s) 118
BsaBI GATNNNNATC 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 55
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 62
Bse8I GATNNNNATC 1 cut(s) 137
BseBI CCWGG 1 cut(s) 57
BseCI ATCGAT 1 cut(s) 118
BseDI CCNNGG 1 cut(s) 55
BseJI GATNNNNATC 1 cut(s) 137
BseLI CCNNNNNNNGG 2 cut(s) 56, 62
BseXI GCAGC 1 cut(s) 190
BseYI CCCAGC 1 cut(s) 50
Bsh1236I CGCG 1 cut(s) 111
Bsh1285I CGRYCG 1 cut(s) 118
BshNI GGYRCC 1 cut(s) 148
BshVI ATCGAT 1 cut(s) 118
BsiEI CGRYCG 1 cut(s) 118
BsiHKCI CYCGRG 1 cut(s) 186
BsiSI CCGG 1 cut(s) 146
BslFI GGGAC 2 cut(s) 59, 169
BslI CCNNNNNNNGG 2 cut(s) 56, 62
BsmFI GGGAC 2 cut(s) 59, 169
BsoBI CYCGRG 1 cut(s) 186
Bsp143I GATC 4 cut(s) 42, 81, 115, 132
Bsp68I TCGCGA 1 cut(s) 111
BspDI ATCGAT 1 cut(s) 118
BspFNI CGCG 1 cut(s) 111
BspLI GGNNCC 2 cut(s) 75, 150
BspPI GGATC 1 cut(s) 127
BspT107I GGYRCC 1 cut(s) 148
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 4 cut(s) 42, 81, 115, 132
Bst2UI CCWGG 1 cut(s) 57
BstFNI CGCG 1 cut(s) 111
BstKTI GATC 4 cut(s) 45, 84, 118, 135
BstMBI GATC 4 cut(s) 42, 81, 115, 132
BstMCI CGRYCG 1 cut(s) 118
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstNI CCWGG 1 cut(s) 57
BstSCI CCNGG 1 cut(s) 55
BstUI CGCG 1 cut(s) 111
BstV1I GCAGC 1 cut(s) 190
Bsu15I ATCGAT 1 cut(s) 118
BsuTUI ATCGAT 1 cut(s) 118
BtuMI TCGCGA 1 cut(s) 111
Cfr13I GGNCC 1 cut(s) 73
ClaI ATCGAT 1 cut(s) 118
Csp6I GTAC 1 cut(s) 128
CviAII CATG 2 cut(s) 79, 163
CviJI RGCY 3 cut(s) 54, 191, 197
CviKI_1 RGCY 3 cut(s) 54, 191, 197
CviQI GTAC 1 cut(s) 128
DpnI GATC 4 cut(s) 44, 83, 117, 134
DpnII GATC 4 cut(s) 42, 81, 115, 132
Eco47I GGWCC 1 cut(s) 73
Eco88I CYCGRG 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 55
FaeI CATG 2 cut(s) 82, 166
FaiI YATR 5 cut(s) 62, 80, 158, 164, 177
FaqI GGGAC 2 cut(s) 59, 169
FatI CATG 2 cut(s) 78, 162
FbaI TGATCA 1 cut(s) 42
Fnu4HI GCNGC 1 cut(s) 204
Fsp4HI GCNGC 1 cut(s) 204
FspBI CTAG 1 cut(s) 217
GluI GCNGC 1 cut(s) 204
GsaI CCCAGC 1 cut(s) 54
HapII CCGG 1 cut(s) 146
Hin1II CATG 2 cut(s) 82, 166
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HpaII CCGG 1 cut(s) 146
HphI GGTGA 1 cut(s) 52
Hpy166II GTNNAC 1 cut(s) 169
Hpy188III TCNNGA 2 cut(s) 110, 186
Hpy8I GTNNAC 1 cut(s) 169
Hpy99I CGWCG 1 cut(s) 116
HpyCH4V TGCA 2 cut(s) 92, 179
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
Hsp92II CATG 2 cut(s) 82, 166
Ksp22I TGATCA 1 cut(s) 42
Kzo9I GATC 4 cut(s) 42, 81, 115, 132
LpnPI CCDG 4 cut(s) 42, 64, 69, 159
Lsp1109I GCAGC 1 cut(s) 190
MaeI CTAG 1 cut(s) 217
MaeIII GTNAC 1 cut(s) 65
MalI GATC 4 cut(s) 44, 83, 117, 134
MboI GATC 4 cut(s) 42, 81, 115, 132
MluCI AATT 1 cut(s) 5
MspI CCGG 1 cut(s) 146
MspR9I CCNGG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 57
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 1 cut(s) 203
NdeII GATC 4 cut(s) 42, 81, 115, 132
NlaIII CATG 2 cut(s) 82, 166
NlaIV GGNNCC 2 cut(s) 75, 150
NmuCI GTSAC 1 cut(s) 65
NruI TCGCGA 1 cut(s) 111
PcsI WCGNNNNNNNCGW 1 cut(s) 115
PkrI GCNGC 1 cut(s) 205
Ple19I CGATCG 1 cut(s) 118
Psp6I CCWGG 1 cut(s) 55
PspFI CCCAGC 1 cut(s) 50
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 2 cut(s) 75, 150
PspPI GGNCC 1 cut(s) 73
PvuI CGATCG 1 cut(s) 118
RruI TCGCGA 1 cut(s) 111
RsaI GTAC 1 cut(s) 129
RsaNI GTAC 1 cut(s) 128
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 4 cut(s) 42, 81, 115, 132
Sau96I GGNCC 1 cut(s) 73
ScaI AGTACT 1 cut(s) 129
ScrFI CCNGG 1 cut(s) 57
SetI ASST 3 cut(s) 61, 67, 154
SinI GGWCC 1 cut(s) 73
Sse9I AATT 1 cut(s) 5
SspMI CTAG 1 cut(s) 217
StyD4I CCNGG 1 cut(s) 55
TaqI TCGA 2 cut(s) 84, 118
TasI AATT 1 cut(s) 5
TatI WGTACW 1 cut(s) 127
TseFI GTSAC 1 cut(s) 65
TseI GCWGC 1 cut(s) 203
Tsp45I GTSAC 1 cut(s) 65
VpaK11BI GGWCC 1 cut(s) 73
XspI CTAG 1 cut(s) 217
ZrmI AGTACT 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.