Rroxscaffold_1G00057340

UDP-glucose flavonoid 3-O-glucosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002688
Physical Location & Seq
Forward (+)
79313920 .. 79314378
459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00057340.1

Sequence Viewer

Length: 459 bp
ATGTCACTTGACCGGATGATCGGTATTCGAGAGAAGGTTAGCCGTGATACCATCACGAAATGGCTAGATGATCAACCTTCATTTTCTATGGTATTTACGTGCTTTGGAAGCATGGGAAGTCTTACCGGACCTCAAGTGAGAGAGGTTGCAATTGGGCTTGAACAAGCCAAGGTTCGTTTCTTGTGGTCCTTGCGTGAGCCGCCCAAGACATTGGGTCTTTCGAGCAAGTACATGGATTTGGAGAAAGCGGTTGATGGGCGTGGTGTGGGGGCGAGTTGGCGTACAAAGCGATTGGAGGGTTCATATCACATTGCGGTTGGAACTCAATTTTGGGGAGTGGATAATACGGCATACCAATTGCTACATGGTCTATATATCTTTGAGCAACAAATGAATGCATTTGAGATGGTGAAAGAATTAAAATTAGCCGTGGGAATTGAGATAGAGCATAGGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

152

Amino Acids

17.29

Weight (kDa)

6.84

Isoelectric Point (pI)

30.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 200, 248, 314
AfaI GTAC 2 cut(s) 230, 283
AgsI TTSAA 1 cut(s) 161
AhdI GACNNNNNGTC 1 cut(s) 213
AjuI GAANNNNNNNTTGG 4 cut(s) 161, 193, 313, 345
AspS9I GGNCC 2 cut(s) 128, 186
AsuHPI GGTGA 1 cut(s) 421
AvaII GGWCC 2 cut(s) 128, 186
BccI CCATC 3 cut(s) 59, 248, 400
BceAI ACGGC 3 cut(s) 27, 363, 413
BclI TGATCA 1 cut(s) 70
BfaI CTAG 1 cut(s) 65
BisI GCNGC 1 cut(s) 200
BlsI GCNGC 1 cut(s) 201
Bme18I GGWCC 2 cut(s) 128, 186
BmeRI GACNNNNNGTC 1 cut(s) 213
BmgT120I GGNCC 2 cut(s) 128, 186
BpuEI CTTGAG 1 cut(s) 117
BsaAI YACGTR 1 cut(s) 99
BsaJI CCNNGG 2 cut(s) 168, 429
BsaWI WCCGGW 2 cut(s) 12, 125
Bse3DI GCAATG 1 cut(s) 309
BseDI CCNNGG 2 cut(s) 168, 429
BseGI GGATG 1 cut(s) 21
BseMI GCAATG 1 cut(s) 309
BsiSI CCGG 2 cut(s) 13, 126
BsmI GAATGC 1 cut(s) 400
Bsp143I GATC 2 cut(s) 18, 70
BspACI CCGC 3 cut(s) 200, 248, 314
BsrDI GCAATG 1 cut(s) 309
BssECI CCNNGG 2 cut(s) 168, 429
BssMI GATC 2 cut(s) 18, 70
BssT1I CCWWGG 1 cut(s) 168
BstBAI YACGTR 1 cut(s) 99
BstDSI CCRYGG 1 cut(s) 429
BstF5I GGATG 1 cut(s) 21
BstKTI GATC 2 cut(s) 21, 73
BstMBI GATC 2 cut(s) 18, 70
BstMWI GCNNNNNNNGC 3 cut(s) 108, 199, 286
BstXI CCANNNNNNTGG 1 cut(s) 211
BtgI CCRYGG 1 cut(s) 429
BtsCI GGATG 1 cut(s) 21
Cfr13I GGNCC 2 cut(s) 128, 186
Csp6I GTAC 2 cut(s) 229, 282
CviAII CATG 3 cut(s) 112, 232, 365
CviJI RGCY 6 cut(s) 42, 64, 157, 167, 199, 428
CviKI_1 RGCY 6 cut(s) 42, 64, 157, 167, 199, 428
CviQI GTAC 2 cut(s) 229, 282
DpnI GATC 2 cut(s) 20, 72
DpnII GATC 2 cut(s) 18, 70
DriI GACNNNNNGTC 1 cut(s) 213
Eam1105I GACNNNNNGTC 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 168
Eco47I GGWCC 2 cut(s) 128, 186
EcoT14I CCWWGG 1 cut(s) 168
EcoT22I ATGCAT 1 cut(s) 400
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 3 cut(s) 115, 235, 368
FaiI YATR 9 cut(s) 89, 113, 233, 304, 352, 366, 373, 375, 450
FatI CATG 3 cut(s) 111, 231, 364
FbaI TGATCA 1 cut(s) 70
Fnu4HI GCNGC 1 cut(s) 200
FokI GGATG 1 cut(s) 28
Fsp4HI GCNGC 1 cut(s) 200
FspBI CTAG 1 cut(s) 65
GluI GCNGC 1 cut(s) 200
HapII CCGG 2 cut(s) 13, 126
Hin1II CATG 3 cut(s) 115, 235, 368
HpaII CCGG 2 cut(s) 13, 126
HphI GGTGA 1 cut(s) 421
Hpy188III TCNNGA 2 cut(s) 29, 55
HpyAV CCTTC 2 cut(s) 28, 87
HpyCH4IV ACGT 1 cut(s) 98
HpyCH4V TGCA 2 cut(s) 149, 398
HpyF10VI GCNNNNNNNGC 3 cut(s) 108, 199, 286
HpySE526I ACGT 1 cut(s) 98
Hsp92II CATG 3 cut(s) 115, 235, 368
Ksp22I TGATCA 1 cut(s) 70
Kzo9I GATC 2 cut(s) 18, 70
LpnPI CCDG 2 cut(s) 26, 139
MaeI CTAG 1 cut(s) 65
MaeII ACGT 1 cut(s) 98
MaeIII GTNAC 1 cut(s) 3
MalI GATC 2 cut(s) 20, 72
MboI GATC 2 cut(s) 18, 70
MfeI CAATTG 2 cut(s) 150, 356
MluCI AATT 6 cut(s) 150, 326, 356, 416, 422, 435
MmeI TCCRAC 1 cut(s) 298
MnlI CCTC 3 cut(s) 136, 141, 289
Mph1103I ATGCAT 1 cut(s) 400
MseI TTAA 1 cut(s) 419
MspI CCGG 2 cut(s) 13, 126
MunI CAATTG 2 cut(s) 150, 356
Mva1269I GAATGC 1 cut(s) 400
MwoI GCNNNNNNNGC 3 cut(s) 108, 199, 286
NdeII GATC 2 cut(s) 18, 70
NlaIII CATG 3 cut(s) 115, 235, 368
NmuCI GTSAC 1 cut(s) 3
NsiI ATGCAT 1 cut(s) 400
PctI GAATGC 1 cut(s) 400
PkrI GCNGC 1 cut(s) 201
Ppu21I YACGTR 1 cut(s) 99
PspPI GGNCC 2 cut(s) 128, 186
RsaI GTAC 2 cut(s) 230, 283
RsaNI GTAC 2 cut(s) 229, 282
SaqAI TTAA 1 cut(s) 419
SatI GCNGC 1 cut(s) 200
Sau3AI GATC 2 cut(s) 18, 70
Sau96I GGNCC 2 cut(s) 128, 186
SetI ASST 6 cut(s) 39, 79, 101, 133, 147, 174
SinI GGWCC 2 cut(s) 128, 186
SmlI CTYRAG 1 cut(s) 132
SmoI CTYRAG 1 cut(s) 132
Sse9I AATT 6 cut(s) 150, 326, 356, 416, 422, 435
SsiI CCGC 3 cut(s) 200, 248, 314
SspMI CTAG 1 cut(s) 65
StyI CCWWGG 1 cut(s) 168
TaiI ACGT 1 cut(s) 101
TaqI TCGA 2 cut(s) 28, 221
TasI AATT 6 cut(s) 150, 326, 356, 416, 422, 435
TatI WGTACW 1 cut(s) 228
TauI GCSGC 1 cut(s) 202
Tru1I TTAA 1 cut(s) 419
Tru9I TTAA 1 cut(s) 419
TseFI GTSAC 1 cut(s) 3
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 3 cut(s) 69, 291, 407
VpaK11BI GGWCC 2 cut(s) 128, 186
XcmI CCANNNNNNNNNTGG 1 cut(s) 362
XspI CTAG 1 cut(s) 65
Zsp2I ATGCAT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.