FvH4_2g02620

UDP-glucose flavonoid 3-O-glucosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0002688
Physical Location & Seq
Forward (+)
2090469 .. 2091923
1455 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g02620.t1

Sequence Viewer

Length: 1455 bp
ATGGGAGAACCAAACACTAAAGAAAGAGTGATGGTGGTGATCATTCCCAGCCCAGGTATTGGTCACTTGGTCCCCATGATCGAGTTTGCACGACGGATTGCCAATCGCGACGATCAAATTTCAGTAATGATCCCCATCATTCCGACACCAAATATGCCCATGGTCAACCAATATGCAAAGTCCCGAGCAAAAGCCTACGCTGCTAATAATATCCAGTTCATCGACCTCCCTCTCATAGACCTCCCTCCGAAGGATCATTTCCGATCAGTGGAAGCCTTGACATCTCTCCATGTCGAAAGTTACAAACCCCACGTCAAGCAAGCAATCACTGACACCTTGCAAGCCGAGTCAGACTCCAACTCGGTACGAGTCCGACTCGCTGCATTAGTTGTGGACGTACTTTGCACTGAGATAATTGATGTGGCTAAAGAACTAGAGGTTCCTCCATACTTGTTCTTCACGTCTCCTGCTGGGTTTCTAGGGTTTATGCTTCATTTGCCAACCCTAGACAAAGAAACAACCACGACTGAGTTTGGTGACTTTAGTAGTGAGTTAATGATACCGAGTTTTGTTAATCCGGTACCGAAGCAAGTGTTACCTTTGGTGGTGCTCAAAAGAGAAGGAGATGGGTACTTTTGGTTTTTGCATCATGCGAATAGGTACAGAGAAACTAAAGGAATCATTGTCAATACGTTTGACGAACTCGAACGACATGCACTTAATGTTGTTTCTGATGGTCGAGGTCCGCCTGTTTATCCGGTCGGACCACTCGTTGATGTCACCGGACCGGATGATTGGTACTCAGAGAAGATTGGCCATGATACCATCATGAAATGGCTAGATGATCAACCTTCATCTTCGGTGTTATTTTTGTGCTTTGGAAGCATGGGAAGTCTTACCGGATTTCAAGTGAGAGAGGTGGCAATAGGGCTTGAACGGGCCAAAGTTCGTTTCTTGTGGTCCTTACGTGAGCCACCTAAGGCATTGGGCCTTTCAAGCAAGTATATGGATCTCGAGAAAGAGGTCAATGGCCTTTTAGAACGAAGTGTCGGGATGGGCTTGGTCTGCAGGTGGGTCCCGCAAGCAGTGGTGTTAGCACACGACGCAATCGGAGGGTTCATATCACATTGCGGATGGAACTCAATTTTGGAGAGTGTATGGTATGGTGTACCAATTGCTACATGGCCTATATATGCCGAGCAACAAATGAATGCGTTTGAGATGGTGAAAGAGTTAGAATTAGCGGTAGGAATTAAGATCAAGCATAGGGATTACGACGATTTAGTAACTGCGGAGGAGGTAGTGAGAGCAGTAACACGCTTAATGGACGGTGACGACTCCGTGAGGAGAAATGCTAAAGAGATGAAAGAAAAGAGTAGAAAGGCTGTAACGGAAAATGGATCATCATTTACATCCTTGGCAAGCTTGATTTACGACATAATGACCAATATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

485

Amino Acids

54.21

Weight (kDa)

5.48

Isoelectric Point (pI)

38.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 287 - 434 2.7e-20 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1059
Acc36I ACCTGC 1 cut(s) 1059
Acc65I GGTACC 1 cut(s) 580
AccB1I GGYRCC 1 cut(s) 580
AccB7I CCANNNNNTGG 1 cut(s) 59
AccII CGCG 1 cut(s) 108
AciI CCGC 5 cut(s) 746, 1079, 1131, 1244, 1292
AclWI GGATC 4 cut(s) 124, 261, 1017, 1408
AcoI YGGCCR 1 cut(s) 814
AcsI RAATTY 1 cut(s) 117
AfaI GTAC 7 cut(s) 366, 399, 582, 632, 662, 800, 1170
AfiI CCNNNNNNNGG 4 cut(s) 53, 59, 250, 268
AgsI TTSAA 3 cut(s) 908, 935, 996
AjiI CACGTC 2 cut(s) 313, 462
AjnI CCWGG 1 cut(s) 52
AjuI GAANNNNNNNTTGG 4 cut(s) 935, 967, 1130, 1162
AluBI AGCT 1 cut(s) 1425
AluI AGCT 1 cut(s) 1425
Alw21I GWGCWC 1 cut(s) 612
Alw26I GTCTC 1 cut(s) 468
AlwI GGATC 4 cut(s) 124, 261, 1017, 1408
Ama87I CYCGRG 2 cut(s) 183, 1013
AoxI GGCC 5 cut(s) 814, 939, 988, 1030, 1184
ApeKI GCWGC 2 cut(s) 200, 380
ApoI RAATTY 1 cut(s) 117
ArsI GACNNNNNNTTYG 2 cut(s) 297, 329
Asp718I GGTACC 1 cut(s) 580
AspS9I GGNCC 8 cut(s) 70, 743, 764, 785, 939, 960, 988, 1075
AsuHPI GGTGA 5 cut(s) 49, 548, 772, 1237, 1343
AvaI CYCGRG 2 cut(s) 183, 1013
AvaII GGWCC 6 cut(s) 70, 743, 764, 785, 960, 1075
AxyI CCTNAGG 1 cut(s) 978
BalI TGGCCA 1 cut(s) 816
BanI GGYRCC 1 cut(s) 580
Bbv12I GWGCWC 1 cut(s) 612
BbvI GCAGC 2 cut(s) 187, 367
BccI CCATC 8 cut(s) 25, 143, 620, 728, 833, 1048, 1128, 1216
BcgI CGANNNNNNTGC 2 cut(s) 695, 729
BciT130I CCWGG 1 cut(s) 54
BclI TGATCA 2 cut(s) 39, 844
BcoDI GTCTC 1 cut(s) 468
BfaI CTAG 4 cut(s) 434, 479, 506, 839
BfmI CTRYAG 1 cut(s) 1066
BfuAI ACCTGC 1 cut(s) 1059
BisI GCNGC 2 cut(s) 201, 381
BlsI GCNGC 2 cut(s) 202, 382
Bme1390I CCNGG 1 cut(s) 54
Bme18I GGWCC 6 cut(s) 70, 743, 764, 785, 960, 1075
BmeT110I CYCGRG 2 cut(s) 183, 1013
BmgBI CACGTC 2 cut(s) 313, 462
BmgT120I GGNCC 8 cut(s) 70, 743, 764, 785, 939, 960, 988, 1075
BmiI GGNNCC 5 cut(s) 72, 441, 582, 1076, 1077
BmrFI CCNGG 1 cut(s) 54
BmsI GCATC 1 cut(s) 655
BplI GAGNNNNNCTC 4 cut(s) 338, 370, 360, 392
BsaAI YACGTR 1 cut(s) 968
BsaBI GATNNNNATC 1 cut(s) 134
BsaJI CCNNGG 3 cut(s) 52, 159, 1416
BsaWI WCCGGW 5 cut(s) 577, 757, 782, 787, 899
Bsc4I CCNNNNNNNGG 4 cut(s) 53, 59, 250, 268
Bse1I ACTGG 1 cut(s) 214
Bse21I CCTNAGG 1 cut(s) 978
Bse3DI GCAATG 1 cut(s) 1126
Bse8I GATNNNNATC 1 cut(s) 134
BseBI CCWGG 1 cut(s) 54
BseDI CCNNGG 3 cut(s) 52, 159, 1416
BseGI GGATG 4 cut(s) 796, 1059, 1139, 1412
BseJI GATNNNNATC 1 cut(s) 134
BseLI CCNNNNNNNGG 4 cut(s) 53, 59, 250, 268
BseMI GCAATG 1 cut(s) 1126
BseMII CTCAG 3 cut(s) 399, 519, 816
BseNI ACTGG 1 cut(s) 214
BseRI GAGGAG 2 cut(s) 1310, 1360
BseXI GCAGC 2 cut(s) 187, 367
BseYI CCCAGC 2 cut(s) 47, 470
Bsh1236I CGCG 1 cut(s) 108
Bsh1285I CGRYCG 1 cut(s) 762
BshFI GGCC 5 cut(s) 816, 941, 990, 1032, 1186
BshNI GGYRCC 1 cut(s) 580
BsiEI CGRYCG 1 cut(s) 762
BsiHKAI GWGCWC 1 cut(s) 612
BsiHKCI CYCGRG 2 cut(s) 183, 1013
BsiSI CCGG 5 cut(s) 578, 758, 783, 788, 900
BslFI GGGAC 3 cut(s) 56, 166, 1061
BslI CCNNNNNNNGG 4 cut(s) 53, 59, 250, 268
BsmAI GTCTC 1 cut(s) 468
BsmBI CGTCTC 1 cut(s) 468
BsmFI GGGAC 3 cut(s) 56, 166, 1061
BsmI GAATGC 1 cut(s) 1216
BsnI GGCC 5 cut(s) 816, 941, 990, 1032, 1186
BsoBI CYCGRG 2 cut(s) 183, 1013
Bsp1286I GDGCHC 1 cut(s) 612
Bsp19I CCATGG 1 cut(s) 159
Bsp68I TCGCGA 1 cut(s) 108
BspACI CCGC 5 cut(s) 746, 1079, 1131, 1244, 1292
BspANI GGCC 5 cut(s) 816, 941, 990, 1032, 1186
BspCNI CTCAG 3 cut(s) 400, 520, 815
BspFNI CGCG 1 cut(s) 108
BspHI TCATGA 1 cut(s) 828
BspLI GGNNCC 5 cut(s) 72, 441, 582, 1076, 1077
BspMAI CTGCAG 1 cut(s) 1070
BspMI ACCTGC 1 cut(s) 1059
BspPI GGATC 4 cut(s) 124, 261, 1017, 1408
BspT107I GGYRCC 1 cut(s) 580
BsrDI GCAATG 1 cut(s) 1126
BsrI ACTGG 1 cut(s) 214
BssECI CCNNGG 3 cut(s) 52, 159, 1416
BssT1I CCWWGG 2 cut(s) 159, 1416
Bst2UI CCWGG 1 cut(s) 54
Bst4CI ACNGT 1 cut(s) 1331
BstBAI YACGTR 1 cut(s) 968
BstC8I GCNNGC 4 cut(s) 321, 342, 1083, 1423
BstDEI CTNAG 4 cut(s) 408, 528, 802, 978
BstDSI CCRYGG 1 cut(s) 159
BstF5I GGATG 4 cut(s) 796, 1059, 1139, 1412
BstFNI CGCG 1 cut(s) 108
BstMAI GTCTC 1 cut(s) 468
BstMCI CGRYCG 1 cut(s) 762
BstMWI GCNNNNNNNGC 6 cut(s) 200, 496, 882, 996, 1065, 1103
BstNI CCWGG 1 cut(s) 54
BstNSI RCATGY 1 cut(s) 716
BstSCI CCNGG 1 cut(s) 52
BstSFI CTRYAG 1 cut(s) 1066
BstUI CGCG 1 cut(s) 108
BstV1I GCAGC 2 cut(s) 187, 367
BstX2I RGATCY 1 cut(s) 1009
BstYI RGATCY 1 cut(s) 1009
Bsu36I CCTNAGG 1 cut(s) 978
BsuRI GGCC 5 cut(s) 816, 941, 990, 1032, 1186
BtgI CCRYGG 1 cut(s) 159
BtrI CACGTC 2 cut(s) 313, 462
BtsCI GGATG 4 cut(s) 796, 1059, 1139, 1412
BtsI GCAGTG 1 cut(s) 1092
BtsIMutI CAGTG 4 cut(s) 273, 327, 405, 1092
BtuMI TCGCGA 1 cut(s) 108
BveI ACCTGC 1 cut(s) 1059
Cac8I GCNNGC 4 cut(s) 321, 342, 1083, 1423
CciI TCATGA 1 cut(s) 828
Cfr13I GGNCC 8 cut(s) 70, 743, 764, 785, 939, 960, 988, 1075
CpoI CGGWCCG 1 cut(s) 785
CseI GACGC 1 cut(s) 1112
Csp6I GTAC 7 cut(s) 365, 398, 581, 631, 661, 799, 1169
CspI CGGWCCG 1 cut(s) 785
CviAII CATG 9 cut(s) 76, 160, 290, 650, 713, 818, 829, 886, 1182
CviQI GTAC 7 cut(s) 365, 398, 581, 631, 661, 799, 1169
DdeI CTNAG 4 cut(s) 408, 528, 802, 978
EaeI YGGCCR 1 cut(s) 814
EciI GGCGGA 1 cut(s) 735
Eco130I CCWWGG 2 cut(s) 159, 1416
Eco47I GGWCC 6 cut(s) 70, 743, 764, 785, 960, 1075
Eco81I CCTNAGG 1 cut(s) 978
Eco88I CYCGRG 2 cut(s) 183, 1013
EcoO109I RGGNCCY 1 cut(s) 1075
EcoRII CCWGG 1 cut(s) 52
EcoT14I CCWWGG 2 cut(s) 159, 1416
ErhI CCWWGG 2 cut(s) 159, 1416
Esp3I CGTCTC 1 cut(s) 468
FaeI CATG 9 cut(s) 79, 163, 293, 653, 716, 821, 832, 889, 1185
FaqI GGGAC 3 cut(s) 56, 166, 1061
FatI CATG 9 cut(s) 75, 159, 289, 649, 712, 817, 828, 885, 1181
FauI CCCGC 1 cut(s) 1086
FbaI TGATCA 2 cut(s) 39, 844
Fnu4HI GCNGC 2 cut(s) 201, 381
FokI GGATG 4 cut(s) 803, 1066, 1146, 1399
Fsp4HI GCNGC 2 cut(s) 201, 381
FspBI CTAG 4 cut(s) 434, 479, 506, 839
GluI GCNGC 2 cut(s) 201, 381
GsaI CCCAGC 2 cut(s) 51, 474
HaeIII GGCC 5 cut(s) 816, 941, 990, 1032, 1186
HapII CCGG 5 cut(s) 578, 758, 783, 788, 900
HgaI GACGC 1 cut(s) 1112
Hin1II CATG 9 cut(s) 79, 163, 293, 653, 716, 821, 832, 889, 1185
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HindIII AAGCTT 1 cut(s) 1423
HinfI GANTC 6 cut(s) 347, 353, 369, 375, 678, 1337
HpaII CCGG 5 cut(s) 578, 758, 783, 788, 900
HphI GGTGA 5 cut(s) 49, 548, 772, 1237, 1343
Hpy166II GTNNAC 3 cut(s) 166, 394, 1169
Hpy188I TCNGA 9 cut(s) 144, 249, 263, 352, 374, 733, 764, 805, 1112
Hpy188III TCNNGA 6 cut(s) 107, 183, 829, 1013, 1015, 1051
Hpy8I GTNNAC 3 cut(s) 166, 394, 1169
Hpy99I CGWCG 4 cut(s) 96, 113, 1106, 1280
HpyAV CCTTC 3 cut(s) 244, 614, 861
HpyCH4III ACNGT 1 cut(s) 1331
HpyCH4IV ACGT 5 cut(s) 312, 396, 461, 692, 967
HpyCH4V TGCA 8 cut(s) 89, 176, 340, 383, 405, 646, 716, 1068
HpyF10VI GCNNNNNNNGC 6 cut(s) 200, 496, 882, 996, 1065, 1103
HpyF3I CTNAG 4 cut(s) 408, 528, 802, 978
HpySE526I ACGT 5 cut(s) 312, 396, 461, 692, 967
Hsp92II CATG 9 cut(s) 79, 163, 293, 653, 716, 821, 832, 889, 1185
KflI GGGWCCC 1 cut(s) 1075
KpnI GGTACC 1 cut(s) 584
Ksp22I TGATCA 2 cut(s) 39, 844
Lsp1109I GCAGC 2 cut(s) 187, 367
LweI GCATC 1 cut(s) 655
MaeI CTAG 4 cut(s) 434, 479, 506, 839
MaeII ACGT 5 cut(s) 312, 396, 461, 692, 967
MaeIII GTNAC 9 cut(s) 62, 299, 536, 594, 778, 1285, 1312, 1331, 1387
MboII GAAGA 3 cut(s) 448, 820, 849
MfeI CAATTG 1 cut(s) 1173
MflI RGATCY 1 cut(s) 1009
MhlI GDGCHC 1 cut(s) 612
MlsI TGGCCA 1 cut(s) 816
MluCI AATT 6 cut(s) 117, 414, 1143, 1173, 1238, 1251
MluNI TGGCCA 1 cut(s) 816
MlyI GAGTC 5 cut(s) 347, 356, 369, 378, 1331
MmeI TCCRAC 4 cut(s) 167, 381, 397, 742
Mox20I TGGCCA 1 cut(s) 816
MscI TGGCCA 1 cut(s) 816
MseI TTAA 5 cut(s) 554, 573, 720, 1254, 1322
Msp20I TGGCCA 1 cut(s) 816
MspI CCGG 5 cut(s) 578, 758, 783, 788, 900
MspR9I CCNGG 1 cut(s) 54
MunI CAATTG 1 cut(s) 1173
Mva1269I GAATGC 1 cut(s) 1216
MvaI CCWGG 1 cut(s) 54
MvnI CGCG 1 cut(s) 108
MwoI GCNNNNNNNGC 6 cut(s) 200, 496, 882, 996, 1065, 1103
NcoI CCATGG 1 cut(s) 159
NlaIII CATG 9 cut(s) 79, 163, 293, 653, 716, 821, 832, 889, 1185
NlaIV GGNNCC 5 cut(s) 72, 441, 582, 1076, 1077
NmeAIII GCCGAG 2 cut(s) 370, 1222
NmuCI GTSAC 4 cut(s) 62, 536, 778, 1331
NruI TCGCGA 1 cut(s) 108
NspI RCATGY 1 cut(s) 716
PaeR7I CTCGAG 1 cut(s) 1013
PagI TCATGA 1 cut(s) 828
PaqCI CACCTGC 1 cut(s) 1059
PcsI WCGNNNNNNNCGW 1 cut(s) 768
PctI GAATGC 1 cut(s) 1216
PfeI GAWTC 1 cut(s) 678
PflMI CCANNNNNTGG 1 cut(s) 59
PkrI GCNGC 2 cut(s) 202, 382
PleI GAGTC 5 cut(s) 347, 355, 369, 377, 1331
PpsI GAGTC 5 cut(s) 347, 355, 369, 377, 1331
Ppu21I YACGTR 1 cut(s) 968
PpuMI RGGWCCY 1 cut(s) 1075
Psp5II RGGWCCY 1 cut(s) 1075
Psp6I CCWGG 1 cut(s) 52
PspFI CCCAGC 2 cut(s) 47, 470
PspGI CCWGG 1 cut(s) 52
PspN4I GGNNCC 5 cut(s) 72, 441, 582, 1076, 1077
PspPI GGNCC 8 cut(s) 70, 743, 764, 785, 939, 960, 988, 1075
PspPPI RGGWCCY 1 cut(s) 1075
PstI CTGCAG 1 cut(s) 1070
PsuI RGATCY 1 cut(s) 1009
RruI TCGCGA 1 cut(s) 108
RsaI GTAC 7 cut(s) 366, 399, 582, 632, 662, 800, 1170
RsaNI GTAC 7 cut(s) 365, 398, 581, 631, 661, 799, 1169
Rsr2I CGGWCCG 1 cut(s) 785
RsrII CGGWCCG 1 cut(s) 785
SaqAI TTAA 5 cut(s) 554, 573, 720, 1254, 1322
SatI GCNGC 2 cut(s) 201, 381
Sau96I GGNCC 8 cut(s) 70, 743, 764, 785, 939, 960, 988, 1075
SchI GAGTC 5 cut(s) 347, 356, 369, 378, 1331
ScrFI CCNGG 1 cut(s) 54
SduI GDGCHC 1 cut(s) 612
SfaNI GCATC 1 cut(s) 655
SfcI CTRYAG 1 cut(s) 1066
Sfr274I CTCGAG 1 cut(s) 1013
SinI GGWCC 6 cut(s) 70, 743, 764, 785, 960, 1075
SlaI CTCGAG 1 cut(s) 1013
SmlI CTYRAG 1 cut(s) 1013
SmoI CTYRAG 1 cut(s) 1013
Sse9I AATT 6 cut(s) 117, 414, 1143, 1173, 1238, 1251
SsiI CCGC 5 cut(s) 746, 1079, 1131, 1244, 1292
SspI AATATT 1 cut(s) 1450
SspMI CTAG 4 cut(s) 434, 479, 506, 839
StyD4I CCNGG 1 cut(s) 52
StyI CCWWGG 2 cut(s) 159, 1416
TaaI ACNGT 1 cut(s) 1331
TaiI ACGT 5 cut(s) 315, 399, 464, 695, 970
TaqI TCGA 6 cut(s) 81, 222, 294, 705, 739, 1014
TasI AATT 6 cut(s) 117, 414, 1143, 1173, 1238, 1251
TfiI GAWTC 1 cut(s) 678
Tru1I TTAA 5 cut(s) 554, 573, 720, 1254, 1322
Tru9I TTAA 5 cut(s) 554, 573, 720, 1254, 1322
TscAI CASTG 4 cut(s) 273, 334, 412, 1092
TseFI GTSAC 4 cut(s) 62, 536, 778, 1331
TseI GCWGC 2 cut(s) 200, 380
Tsp45I GTSAC 4 cut(s) 62, 536, 778, 1331
TspDTI ATGAA 7 cut(s) 208, 482, 843, 845, 1108, 1223, 1379
TspGWI ACGGA 3 cut(s) 109, 1330, 1406
TspRI CASTG 4 cut(s) 273, 334, 412, 1092
Van91I CCANNNNNTGG 1 cut(s) 59
VpaK11BI GGWCC 6 cut(s) 70, 743, 764, 785, 960, 1075
XapI RAATTY 1 cut(s) 117
XceI RCATGY 1 cut(s) 716
XcmI CCANNNNNNNNNTGG 1 cut(s) 1179
XhoI CTCGAG 1 cut(s) 1013
XspI CTAG 4 cut(s) 434, 479, 506, 839
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.