Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0009170

Physical Location & Seq

Genomic Coordinates Forward (+)

853797 .. 855443

Gene Structure 1647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G018400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGCTTCCTTGCAAACTTCAACTCTCATTTTCTCTTCTTCTTTTTCTTCTTCATCCTGTTCTTCTTCAAGGAGATCAAATATCAATGCTGCTATCCATGTCCCCAAGCTCCCAAGAGTCCGCTTCGCAGTCCCAAAAACAGCAACAAAGCTAGTTCTTGAGGGGCTTCAATTGAGGGAACCAAAACATATCCTTGATAATGATTCATACAATAACCATTCTGCCACTCCAGCAACTCCTACAGCTGCTACAACTCAGCTCTATGCAATCTTAGAAGCCGTAGCAGACAGAGTTGAGATGCACAACAACATTCGTGAGCAGCGCGACAACTGGAACACGCTTCTTCTCAACTCCATCAACATGATCACTCTCTCAGCTTCACTCATGGCTGGAATTGCAGGCACTGCAGCCGGTGCTGGAGTGTCGGTTTTGGCCTTGAACATCTCCTCCACTCTTTTGTTCTCTGCAGCCTCCGGAATGCTTCTTGTGATGAACAAGATCCAGCCTTCGCAGCTCGCTGAGGAACAGCGCAATGCCACAAGATTGTTCAAGCAGCTCCAGAGCCAAATCCAAACCATGCTTGCTCTTCATGATCCTACTGAACAAGATGTGAAGGACACTATGGAGAAGGTCTTGGCACTTGACAAAGCTTACCCACTTCCTTTGCTTGGAGCCATGCTTGAAAAGTTCCCTAAAAAATTTGAGCCAGCTGTTTGGTGGCCTAAAAATATTCAATCTCAAAAGCCAAGCAAACCCAACTCCCAGATCGGAAAGATTAATGGGTGGAGTGCTGAGCTTGAAGAGGAAATGAGGGAAATTATTGAAGTGGTGAAGACGAAAGACATAGAAGACTATGAGAGACTGGGGAGCTTGGTGTTGAAGATCAACAAGATTTTGGCAATCTCAGGCCCTTTGCTAACTGGGGTTGCAGCCATTGGCTCTGCTTTTGTGGGCCATGGGTCAGCTAGTGCCATAGTGGCAGTGGCTGCAGGGTCATTGGCTAGCGCAGTTAATGCTTTTCAGCATGGTGGGCAAATTGGGATGGTGTTTGAGATGTATAGGAACTGCGCTGGCTTCTTCAACAAATTGGAGGATACAATTCAAGCCACACTTGAAGAACAAGATTTGGAGAAAAGAGAAAATGGGGAGTTGTTTGAAATGAAGGTTGCTATGCAATTGGGAAGAAGCTCGGATCAGCTTAGAGAACTTGCATCAAAATCAGCTTCATCTCGTCTCGAGGGAACATCCATAGATGAATTTGGTTGCAAGCTTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroplast_duf

Protein Analysis

426

Amino Acids

46.27

Weight (kDa)

6.42

Isoelectric Point (pI)

48.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04480 AT4G22030
fragaria_vesca	FvH4_3g01810
malus_domestica	MD05G1348900.v1.1 MD05G1349100.v1.1 MD05G1349200.v1.1 MD10G1323800.v1.1
prunus_persica	Prupe.4G018400_v2.0.a1 Prupe.8G124400_v2.0.a1
pyrus_communis	pycom05g31650 pycom05g31680 pycom10g27420
rosa_chinensis	RchiOBHm_Chr5g0002641
rosa_laevigata	RLG00000031049
rosa_multiflora	Rmu_sc0009084.1_g000014
rosa_roxburghii	Rroxscaffold_1G00073220
rosa_rugosa	Rorug04G0398000
rosa_samantha	Rh5AG021400 Rh5BG024100 Rh5CG023600 Rh5DG022500
rosa_wichuraiana	Rw5G001980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	324
AccIII	TCCGGA	1 cut(s)	473
AciI	CCGC	1 cut(s)	121
AclWI	GGATC	3 cut(s)	493, 587, 1200
AcsI	RAATTY	2 cut(s)	698, 1256
AfiI	CCNNNNNNNGG	1 cut(s)	668
AloI	GAACNNNNNNTCC	2 cut(s)	431, 463
Alw26I	GTCTC	2 cut(s)	853, 1238
AlwI	GGATC	3 cut(s)	493, 587, 1200
AlwNI	CAGNNNCTG	2 cut(s)	404, 986
Ama87I	CYCGRG	1 cut(s)	1235
Aor13HI	TCCGGA	1 cut(s)	473
AoxI	GGCC	4 cut(s)	432, 719, 907, 952
ApeKI	GCWGC	9 cut(s)	89, 245, 319, 407, 467, 511, 553, 929, 986
ApoI	RAATTY	2 cut(s)	698, 1256
AseI	ATTAAT	1 cut(s)	777
AspLEI	GCGC	4 cut(s)	324, 531, 1007, 1070
AspS9I	GGNCC	2 cut(s)	908, 952
AsuHPI	GGTGA	1 cut(s)	841
AsuNHI	GCTAGC	1 cut(s)	1001
AvaI	CYCGRG	1 cut(s)	1235
BbsI	GAAGAC	2 cut(s)	839, 855
BbvCI	CCTCAGC	1 cut(s)	519
BbvI	GCAGC	9 cut(s)	76, 232, 331, 419, 479, 523, 565, 941, 973
BccI	CCATC	2 cut(s)	362, 1036
BceAI	ACGGC	1 cut(s)	263
BciVI	GTATCC	1 cut(s)	1087
BclI	TGATCA	1 cut(s)	363
BcoDI	GTCTC	2 cut(s)	853, 1238
BfaI	CTAG	3 cut(s)	152, 966, 1002
BfmI	CTRYAG	4 cut(s)	240, 405, 465, 987
BfuI	GTATCC	1 cut(s)	1087
BglI	GCCNNNNNGGC	1 cut(s)	977
BisI	GCNGC	9 cut(s)	90, 246, 320, 408, 468, 512, 554, 930, 987
BlpI	GCTNAGC	1 cut(s)	792
BlsI	GCNGC	9 cut(s)	91, 247, 321, 409, 469, 513, 555, 931, 988
BmeT110I	CYCGRG	1 cut(s)	1235
BmgT120I	GGNCC	2 cut(s)	908, 952
BmiI	GGNNCC	2 cut(s)	180, 673
BmrI	ACTGGG	2 cut(s)	872, 930
BmsI	GCATC	2 cut(s)	288, 1220
BmtI	GCTAGC	1 cut(s)	1005
BmuI	ACTGGG	2 cut(s)	872, 930
BpiI	GAAGAC	2 cut(s)	839, 855
BpmI	CTGGAG	3 cut(s)	213, 438, 542
Bpu10I	CCTNAGC	1 cut(s)	519
Bpu1102I	GCTNAGC	1 cut(s)	792
BpuEI	CTTGAG	1 cut(s)	179
BsaJI	CCNNGG	1 cut(s)	955
BsaWI	WCCGGW	1 cut(s)	473
BsaXI	ACNNNNNCTCC	4 cut(s)	411, 431, 441, 461
Bsc4I	CCNNNNNNNGG	1 cut(s)	668
Bse118I	RCCGGY	1 cut(s)	410
Bse1I	ACTGG	3 cut(s)	335, 867, 925
Bse3DI	GCAATG	1 cut(s)	538
BseAI	TCCGGA	1 cut(s)	473
BseDI	CCNNGG	1 cut(s)	955
BseGI	GGATG	3 cut(s)	53, 1047, 1244
BseLI	CCNNNNNNNGG	1 cut(s)	668
BseMI	GCAATG	1 cut(s)	538
BseMII	CTCAG	5 cut(s)	269, 387, 510, 783, 918
BseNI	ACTGG	3 cut(s)	335, 867, 925
BseRI	GAGGAG	1 cut(s)	436
BseXI	GCAGC	9 cut(s)	76, 232, 331, 419, 479, 523, 565, 941, 973
Bsh1236I	CGCG	1 cut(s)	324
BshFI	GGCC	4 cut(s)	434, 721, 909, 954
BsiHKCI	CYCGRG	1 cut(s)	1235
BsiSI	CCGG	2 cut(s)	411, 474
BslFI	GGGAC	2 cut(s)	86, 116
BslI	CCNNNNNNNGG	1 cut(s)	668
BsmAI	GTCTC	2 cut(s)	853, 1238
BsmBI	CGTCTC	1 cut(s)	1238
BsmFI	GGGAC	2 cut(s)	86, 116
BsmI	GAATGC	1 cut(s)	483
BsnI	GGCC	4 cut(s)	434, 721, 909, 954
BsoBI	CYCGRG	1 cut(s)	1235
Bsp13I	TCCGGA	1 cut(s)	473
Bsp143I	GATC	7 cut(s)	74, 363, 498, 592, 765, 882, 1192
Bsp1720I	GCTNAGC	1 cut(s)	792
Bsp19I	CCATGG	1 cut(s)	955
BspACI	CCGC	1 cut(s)	121
BspANI	GGCC	4 cut(s)	434, 721, 909, 954
BspCNI	CTCAG	5 cut(s)	268, 386, 511, 784, 917
BspEI	TCCGGA	1 cut(s)	473
BspFNI	CGCG	1 cut(s)	324
BspHI	TCATGA	1 cut(s)	589
BspLI	GGNNCC	2 cut(s)	180, 673
BspMAI	CTGCAG	3 cut(s)	409, 469, 991
BspOI	GCTAGC	1 cut(s)	1005
BspPI	GGATC	3 cut(s)	493, 587, 1200
BspQI	GCTCTTC	1 cut(s)	591
BsrDI	GCAATG	1 cut(s)	538
BsrFI	RCCGGY	1 cut(s)	410
BsrI	ACTGG	3 cut(s)	335, 867, 925
BssAI	RCCGGY	1 cut(s)	410
BssECI	CCNNGG	1 cut(s)	955
BssMI	GATC	7 cut(s)	74, 363, 498, 592, 765, 882, 1192
BssT1I	CCWWGG	1 cut(s)	955
Bst6I	CTCTTC	3 cut(s)	40, 591, 795
BstAPI	GCANNNNNTGC	4 cut(s)	404, 413, 986, 1013
BstC8I	GCNNGC	7 cut(s)	400, 516, 582, 708, 1003, 1072, 1268
BstDEI	CTNAG	7 cut(s)	255, 271, 373, 519, 792, 904, 1199
BstDSI	CCRYGG	1 cut(s)	955
BstF5I	GGATG	3 cut(s)	53, 1047, 1244
BstFNI	CGCG	1 cut(s)	324
BstHHI	GCGC	4 cut(s)	324, 531, 1007, 1070
BstKTI	GATC	7 cut(s)	77, 366, 501, 595, 768, 885, 1195
BstMAI	GTCTC	2 cut(s)	853, 1238
BstMBI	GATC	7 cut(s)	74, 363, 498, 592, 765, 882, 1192
BstMWI	GCNNNNNNNGC	9 cut(s)	230, 395, 404, 413, 511, 977, 986, 1013, 1030
BstSFI	CTRYAG	4 cut(s)	240, 405, 465, 987
BstUI	CGCG	1 cut(s)	324
BstV1I	GCAGC	9 cut(s)	76, 232, 331, 419, 479, 523, 565, 941, 973
BstV2I	GAAGAC	2 cut(s)	839, 855
BstX2I	RGATCY	1 cut(s)	498
BstXI	CCANNNNNNTGG	1 cut(s)	714
BstYI	RGATCY	1 cut(s)	498
BsuI	GTATCC	1 cut(s)	1087
BsuRI	GGCC	4 cut(s)	434, 721, 909, 954
BtgI	CCRYGG	1 cut(s)	955
BtsCI	GGATG	3 cut(s)	53, 1047, 1244
BtsI	GCAGTG	2 cut(s)	402, 987
BtsIMutI	CAGTG	2 cut(s)	402, 987
Cac8I	GCNNGC	7 cut(s)	400, 516, 582, 708, 1003, 1072, 1268
CaiI	CAGNNNCTG	2 cut(s)	404, 986
CciI	TCATGA	1 cut(s)	589
CfoI	GCGC	4 cut(s)	324, 531, 1007, 1070
Cfr10I	RCCGGY	1 cut(s)	410
Cfr13I	GGNCC	2 cut(s)	908, 952
CspCI	CAANNNNNGTGG	2 cut(s)	645, 680
CviAII	CATG	8 cut(s)	98, 361, 385, 577, 590, 676, 956, 1025
DdeI	CTNAG	7 cut(s)	255, 271, 373, 519, 792, 904, 1199
DpnI	GATC	7 cut(s)	76, 365, 500, 594, 767, 884, 1194
DpnII	GATC	7 cut(s)	74, 363, 498, 592, 765, 882, 1192
Eam1104I	CTCTTC	3 cut(s)	40, 591, 795
EarI	CTCTTC	3 cut(s)	40, 591, 795
Eco130I	CCWWGG	1 cut(s)	955
Eco88I	CYCGRG	1 cut(s)	1235
EcoO109I	RGGNCCY	1 cut(s)	908
EcoT14I	CCWWGG	1 cut(s)	955
ErhI	CCWWGG	1 cut(s)	955
Esp3I	CGTCTC	1 cut(s)	1238
FaeI	CATG	8 cut(s)	101, 364, 388, 580, 593, 679, 959, 1028
FalI	AAGNNNNNCTT	2 cut(s)	1095, 1127
FaqI	GGGAC	2 cut(s)	86, 116
FatI	CATG	8 cut(s)	97, 360, 384, 576, 589, 675, 955, 1024
FbaI	TGATCA	1 cut(s)	363
Fnu4HI	GCNGC	9 cut(s)	90, 246, 320, 408, 468, 512, 554, 930, 987
FokI	GGATG	3 cut(s)	40, 1054, 1231
Fsp4HI	GCNGC	9 cut(s)	90, 246, 320, 408, 468, 512, 554, 930, 987
FspBI	CTAG	3 cut(s)	152, 966, 1002
GlaI	GCGC	4 cut(s)	323, 530, 1006, 1069
GluI	GCNGC	9 cut(s)	90, 246, 320, 408, 468, 512, 554, 930, 987
GsuI	CTGGAG	3 cut(s)	213, 438, 542
HaeIII	GGCC	4 cut(s)	434, 721, 909, 954
HapII	CCGG	2 cut(s)	411, 474
HhaI	GCGC	4 cut(s)	324, 531, 1007, 1070
Hin1II	CATG	8 cut(s)	101, 364, 388, 580, 593, 679, 959, 1028
Hin6I	GCGC	4 cut(s)	322, 529, 1005, 1068
HinP1I	GCGC	4 cut(s)	322, 529, 1005, 1068
HindIII	AAGCTT	2 cut(s)	648, 1268
HinfI	GANTC	2 cut(s)	117, 203
HpaII	CCGG	2 cut(s)	411, 474
HphI	GGTGA	1 cut(s)	841
Hpy188I	TCNGA	2 cut(s)	770, 1192
Hpy188III	TCNNGA	6 cut(s)	158, 314, 474, 559, 590, 1235
HpyAV	CCTTC	4 cut(s)	516, 607, 622, 1156
HpyF10VI	GCNNNNNNNGC	9 cut(s)	230, 395, 404, 413, 511, 977, 986, 1013, 1030
HpyF3I	CTNAG	7 cut(s)	255, 271, 373, 519, 792, 904, 1199
Hsp92II	CATG	8 cut(s)	101, 364, 388, 580, 593, 679, 959, 1028
HspAI	GCGC	4 cut(s)	322, 529, 1005, 1068
Kpn2I	TCCGGA	1 cut(s)	473
Ksp22I	TGATCA	1 cut(s)	363
Kzo9I	GATC	7 cut(s)	74, 363, 498, 592, 765, 882, 1192
LguI	GCTCTTC	1 cut(s)	591
LmnI	GCTCC	4 cut(s)	114, 561, 671, 867
Lsp1109I	GCAGC	9 cut(s)	76, 232, 331, 419, 479, 523, 565, 941, 973
LweI	GCATC	2 cut(s)	288, 1220
MaeI	CTAG	3 cut(s)	152, 966, 1002
MalI	GATC	7 cut(s)	76, 365, 500, 594, 767, 884, 1194
MboI	GATC	7 cut(s)	74, 363, 498, 592, 765, 882, 1192
MfeI	CAATTG	2 cut(s)	170, 1175
MflI	RGATCY	1 cut(s)	498
MluCI	AATT	9 cut(s)	170, 393, 698, 816, 1035, 1085, 1098, 1175, 1256
MlyI	GAGTC	1 cut(s)	126
MnlI	CCTC	9 cut(s)	154, 168, 457, 481, 514, 796, 804, 1084, 1231
MroI	TCCGGA	1 cut(s)	473
MseI	TTAA	2 cut(s)	777, 1011
MslI	CAYNNNNRTG	1 cut(s)	359
MspA1I	CMGCKG	2 cut(s)	245, 710
MspI	CCGG	2 cut(s)	411, 474
MunI	CAATTG	2 cut(s)	170, 1175
Mva1269I	GAATGC	1 cut(s)	483
MvnI	CGCG	1 cut(s)	324
MwoI	GCNNNNNNNGC	9 cut(s)	230, 395, 404, 413, 511, 977, 986, 1013, 1030
NcoI	CCATGG	1 cut(s)	955
NdeII	GATC	7 cut(s)	74, 363, 498, 592, 765, 882, 1192
NheI	GCTAGC	1 cut(s)	1001
NlaIII	CATG	8 cut(s)	101, 364, 388, 580, 593, 679, 959, 1028
NlaIV	GGNNCC	2 cut(s)	180, 673
PaeR7I	CTCGAG	1 cut(s)	1235
PagI	TCATGA	1 cut(s)	589
PciSI	GCTCTTC	1 cut(s)	591
PctI	GAATGC	1 cut(s)	483
PfeI	GAWTC	1 cut(s)	203
PkrI	GCNGC	9 cut(s)	91, 247, 321, 409, 469, 513, 555, 931, 988
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
PshBI	ATTAAT	1 cut(s)	777
PspN4I	GGNNCC	2 cut(s)	180, 673
PspPI	GGNCC	2 cut(s)	908, 952
PstI	CTGCAG	3 cut(s)	409, 469, 991
PstNI	CAGNNNCTG	2 cut(s)	404, 986
PsuI	RGATCY	1 cut(s)	498
PvuII	CAGCTG	2 cut(s)	245, 710
RseI	CAYNNNNRTG	1 cut(s)	359
SapI	GCTCTTC	1 cut(s)	591
SaqAI	TTAA	2 cut(s)	777, 1011
SatI	GCNGC	9 cut(s)	90, 246, 320, 408, 468, 512, 554, 930, 987
Sau3AI	GATC	7 cut(s)	74, 363, 498, 592, 765, 882, 1192
Sau96I	GGNCC	2 cut(s)	908, 952
SchI	GAGTC	1 cut(s)	126
SfaNI	GCATC	2 cut(s)	288, 1220
SfcI	CTRYAG	4 cut(s)	240, 405, 465, 987
Sfr274I	CTCGAG	1 cut(s)	1235
SlaI	CTCGAG	1 cut(s)	1235
SmiMI	CAYNNNNRTG	1 cut(s)	359
SmlI	CTYRAG	2 cut(s)	158, 1235
SmoI	CTYRAG	2 cut(s)	158, 1235
Sse9I	AATT	9 cut(s)	170, 393, 698, 816, 1035, 1085, 1098, 1175, 1256
SsiI	CCGC	1 cut(s)	121
SspI	AATATT	1 cut(s)	730
SspMI	CTAG	3 cut(s)	152, 966, 1002
StyI	CCWWGG	1 cut(s)	955
TaqI	TCGA	1 cut(s)	1236
TasI	AATT	9 cut(s)	170, 393, 698, 816, 1035, 1085, 1098, 1175, 1256
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	2 cut(s)	777, 1011
Tru9I	TTAA	2 cut(s)	777, 1011
TscAI	CASTG	2 cut(s)	409, 987
TseI	GCWGC	9 cut(s)	89, 245, 319, 407, 467, 511, 553, 929, 986
TspDTI	ATGAA	7 cut(s)	42, 195, 506, 578, 1175, 1215, 1269
TspRI	CASTG	2 cut(s)	409, 987
VspI	ATTAAT	1 cut(s)	777
XapI	RAATTY	2 cut(s)	698, 1256
XcmI	CCANNNNNNNNNTGG	2 cut(s)	714, 979
XhoI	CTCGAG	1 cut(s)	1235
XspI	CTAG	3 cut(s)	152, 966, 1002

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.