Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0009170

Physical Location & Seq

Genomic Coordinates Forward (+)

14979780 .. 14981296

Gene Structure 1517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G124400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGCGTCCTTGCAAACTTCAACTCTCATTTTCTCTTCTTCTTTTTCTTCTTCATGCTGTTCTTCTTCAAGGAGATCAAATACCAATGCTGCTATCCATGTCCCCAAGCTCCCAAGAGTCCGCTTCACAGTCCCAAAAACAGCAACGAAGCTGGTGCTTGAGGGACTTCAATTGAGGGAACCAAAACATATCCTTGATAATGATTCATACAATAACCATTCTGCCATTCCAGCAACTCCTACAGCTGCTACAACTCAGCTATATGCAATCTTAGAAGCCGTAGCAGACAGAGTTGAGATGCACAACAACATTCGCGAGTGGCGCGACAACTGGAACACGCTTCTTCTCAACTCCATCAACATGATCACTCTCTCAGCTTCACTCATGGCTGGAATTGCAGGCACTGCAGCGGGTGCTGGAGTGTCCGTTTCGGCCTTGAATATCTCCTCCACTATTTTGTTCTCTGCAGCCTCCGGAATGCTGCTTGTGATGAACAAGCTCCAGCCTTCGCAGCTCGCTGAGGAACAGCGCAATGCCACAAGATTGTTCAAGCAGCTCCAGATCCAAATCCAAACCATGCTTGCTCTTCATGAACCTACTGAACAAGATGTGAAGGACACTATGGAGAAGGTCTTGGCACTTGACAAAGCTTACCCACTTCCTTTGCTTGGAGCCATGCTTGAAAAGTTCCCTAAAAAATTTGAGCCGGCTGTTTGGTGGCCTAAAAATATTCAATCTCAAAAGCCAAGCAAACCCAACTCCCAGATGGGAAAGATTAATGGGTGGAGTGCTGAACTTGAAGAGGAAATGAGGGAAATTATTGAAGTGGTGAAGACGAAAGACATAGAAGACTATGAGAGACTGGGGAGCTTGGTGTTGAAGATCAACAAGATTTTGGCAATCTCAGGCCCTTTGCTAACTGGGGCTGCAGCCATTGGCTCTGCTTTTGTGGGCCAGGGCTCAGCTAGTGCCATAGTGGCAGTGGCTGCAGGGTCATTGGCTAGCGCAGTTAATGCCTTTCAGCATGGTGGGCAAATTGGGATGGTGTTTGAGATGTATAGGAACTGCGCTGGCTTCTTCAACAAATTGGAGGATACAATTCAAGCCACACTTGAAGAACAAGATTTGGAGAAAAGAGAAAATGGGGAGTTGTTTGAAATGAAGGTTGCTATGCAACTGGGAAGAAGTTCAGATCAGCTTAGAGAACTTGCATCAAAATCAGCTTCATCTCGTCTGGAGGGAATATCCGTAGATGAATTTGGTTGCAAGCTTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroplast_duf

Protein Analysis

426

Amino Acids

46.36

Weight (kDa)

6.36

Isoelectric Point (pI)

45.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04480 AT4G22030
fragaria_vesca	FvH4_3g01810
malus_domestica	MD05G1348900.v1.1 MD05G1349100.v1.1 MD05G1349200.v1.1 MD10G1323800.v1.1
prunus_persica	Prupe.4G018400_v2.0.a1 Prupe.8G124400_v2.0.a1
pyrus_communis	pycom05g31650 pycom05g31680 pycom10g27420
rosa_chinensis	RchiOBHm_Chr5g0002641
rosa_laevigata	RLG00000031049
rosa_multiflora	Rmu_sc0009084.1_g000014
rosa_roxburghii	Rroxscaffold_1G00073220
rosa_rugosa	Rorug04G0398000
rosa_samantha	Rh5AG021400 Rh5BG024100 Rh5CG023600 Rh5DG022500
rosa_wichuraiana	Rw5G001980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	315, 324
AccIII	TCCGGA	1 cut(s)	473
AciI	CCGC	2 cut(s)	121, 410
AclWI	GGATC	1 cut(s)	556
AcsI	RAATTY	2 cut(s)	698, 1256
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	668
AjnI	CCWGG	1 cut(s)	954
Alw26I	GTCTC	1 cut(s)	853
AlwI	GGATC	1 cut(s)	556
AlwNI	CAGNNNCTG	2 cut(s)	404, 986
Aor13HI	TCCGGA	1 cut(s)	473
AoxI	GGCC	4 cut(s)	432, 719, 907, 952
ApoI	RAATTY	2 cut(s)	698, 1256
AseI	ATTAAT	1 cut(s)	777
Asp700I	GAANNNNTTC	1 cut(s)	1186
AspLEI	GCGC	4 cut(s)	324, 531, 1007, 1070
AspS9I	GGNCC	2 cut(s)	908, 952
AsuHPI	GGTGA	1 cut(s)	841
AsuNHI	GCTAGC	1 cut(s)	1001
BanII	GRGCYC	1 cut(s)	962
BbsI	GAAGAC	2 cut(s)	839, 855
BbvCI	CCTCAGC	1 cut(s)	519
BccI	CCATC	3 cut(s)	362, 760, 1036
BceAI	ACGGC	1 cut(s)	263
BcgI	CGANNNNNNTGC	2 cut(s)	136, 170
BciT130I	CCWGG	1 cut(s)	956
BciVI	GTATCC	1 cut(s)	1087
BclI	TGATCA	1 cut(s)	363
BcoDI	GTCTC	1 cut(s)	853
BfaI	CTAG	2 cut(s)	966, 1002
BfmI	CTRYAG	5 cut(s)	240, 405, 465, 927, 987
BfuI	GTATCC	1 cut(s)	1087
BglI	GCCNNNNNGGC	1 cut(s)	977
BlpI	GCTNAGC	1 cut(s)	961
Bme1390I	CCNGG	1 cut(s)	956
BmgT120I	GGNCC	2 cut(s)	908, 952
BmiI	GGNNCC	2 cut(s)	180, 673
BmrFI	CCNGG	1 cut(s)	956
BmrI	ACTGGG	3 cut(s)	872, 930, 1187
BmsI	GCATC	2 cut(s)	288, 1220
BmtI	GCTAGC	1 cut(s)	1005
BmuI	ACTGGG	3 cut(s)	872, 930, 1187
BpiI	GAAGAC	2 cut(s)	839, 855
BpmI	CTGGAG	4 cut(s)	438, 485, 542, 1256
Bpu10I	CCTNAGC	1 cut(s)	519
Bpu1102I	GCTNAGC	1 cut(s)	961
BpuEI	CTTGAG	1 cut(s)	179
BsaBI	GATNNNNATC	1 cut(s)	566
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	955
BsaWI	WCCGGW	1 cut(s)	473
BsaXI	ACNNNNNCTCC	2 cut(s)	411, 441
Bsc4I	CCNNNNNNNGG	1 cut(s)	668
Bse118I	RCCGGY	1 cut(s)	706
Bse1I	ACTGG	4 cut(s)	335, 867, 925, 1182
Bse3DI	GCAATG	1 cut(s)	538
Bse8I	GATNNNNATC	1 cut(s)	566
BseAI	TCCGGA	1 cut(s)	473
BseBI	CCWGG	1 cut(s)	956
BseDI	CCNNGG	1 cut(s)	955
BseGI	GGATG	1 cut(s)	1047
BseJI	GATNNNNATC	1 cut(s)	566
BseLI	CCNNNNNNNGG	1 cut(s)	668
BseMI	GCAATG	1 cut(s)	538
BseMII	CTCAG	5 cut(s)	269, 387, 510, 918, 975
BseNI	ACTGG	4 cut(s)	335, 867, 925, 1182
BseRI	GAGGAG	1 cut(s)	436
Bsh1236I	CGCG	2 cut(s)	315, 324
BshFI	GGCC	4 cut(s)	434, 721, 909, 954
BsiSI	CCGG	2 cut(s)	474, 707
BslFI	GGGAC	3 cut(s)	86, 116, 177
BslI	CCNNNNNNNGG	1 cut(s)	668
BsmAI	GTCTC	1 cut(s)	853
BsmFI	GGGAC	3 cut(s)	86, 116, 177
BsmI	GAATGC	1 cut(s)	483
BsnI	GGCC	4 cut(s)	434, 721, 909, 954
Bsp1286I	GDGCHC	1 cut(s)	962
Bsp13I	TCCGGA	1 cut(s)	473
Bsp143I	GATC	5 cut(s)	74, 363, 561, 882, 1192
Bsp1720I	GCTNAGC	1 cut(s)	961
Bsp68I	TCGCGA	1 cut(s)	315
BspACI	CCGC	2 cut(s)	121, 410
BspANI	GGCC	4 cut(s)	434, 721, 909, 954
BspCNI	CTCAG	5 cut(s)	268, 386, 511, 917, 974
BspEI	TCCGGA	1 cut(s)	473
BspFNI	CGCG	2 cut(s)	315, 324
BspHI	TCATGA	1 cut(s)	589
BspLI	GGNNCC	2 cut(s)	180, 673
BspMAI	CTGCAG	4 cut(s)	409, 469, 931, 991
BspOI	GCTAGC	1 cut(s)	1005
BspPI	GGATC	1 cut(s)	556
BspQI	GCTCTTC	1 cut(s)	591
BsrDI	GCAATG	1 cut(s)	538
BsrFI	RCCGGY	1 cut(s)	706
BsrI	ACTGG	4 cut(s)	335, 867, 925, 1182
BssAI	RCCGGY	1 cut(s)	706
BssECI	CCNNGG	1 cut(s)	955
BssMI	GATC	5 cut(s)	74, 363, 561, 882, 1192
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	956
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	3 cut(s)	40, 591, 795
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	4 cut(s)	404, 413, 986, 1013
BstC8I	GCNNGC	7 cut(s)	400, 516, 582, 708, 1003, 1072, 1268
BstDEI	CTNAG	7 cut(s)	255, 271, 373, 519, 904, 961, 1199
BstF5I	GGATG	1 cut(s)	1047
BstFNI	CGCG	2 cut(s)	315, 324
BstHHI	GCGC	4 cut(s)	324, 531, 1007, 1070
BstKTI	GATC	5 cut(s)	77, 366, 564, 885, 1195
BstMAI	GTCTC	1 cut(s)	853
BstMBI	GATC	5 cut(s)	74, 363, 561, 882, 1192
BstNI	CCWGG	1 cut(s)	956
BstSCI	CCNGG	1 cut(s)	954
BstSFI	CTRYAG	5 cut(s)	240, 405, 465, 927, 987
BstUI	CGCG	2 cut(s)	315, 324
BstV2I	GAAGAC	2 cut(s)	839, 855
BstX2I	RGATCY	1 cut(s)	561
BstYI	RGATCY	1 cut(s)	561
BsuI	GTATCC	1 cut(s)	1087
BsuRI	GGCC	4 cut(s)	434, 721, 909, 954
BtsCI	GGATG	1 cut(s)	1047
BtsI	GCAGTG	2 cut(s)	402, 987
BtsIMutI	CAGTG	2 cut(s)	402, 987
BtuMI	TCGCGA	1 cut(s)	315
Cac8I	GCNNGC	7 cut(s)	400, 516, 582, 708, 1003, 1072, 1268
CaiI	CAGNNNCTG	2 cut(s)	404, 986
CciI	TCATGA	1 cut(s)	589
CfoI	GCGC	4 cut(s)	324, 531, 1007, 1070
Cfr10I	RCCGGY	1 cut(s)	706
Cfr13I	GGNCC	2 cut(s)	908, 952
CspCI	CAANNNNNGTGG	2 cut(s)	645, 680
CviAII	CATG	8 cut(s)	54, 98, 361, 385, 577, 590, 676, 1025
DdeI	CTNAG	7 cut(s)	255, 271, 373, 519, 904, 961, 1199
DpnI	GATC	5 cut(s)	76, 365, 563, 884, 1194
DpnII	GATC	5 cut(s)	74, 363, 561, 882, 1192
Eam1104I	CTCTTC	3 cut(s)	40, 591, 795
EarI	CTCTTC	3 cut(s)	40, 591, 795
Eco24I	GRGCYC	1 cut(s)	962
EcoO109I	RGGNCCY	1 cut(s)	908
EcoRII	CCWGG	1 cut(s)	954
EcoT38I	GRGCYC	1 cut(s)	962
FaeI	CATG	8 cut(s)	57, 101, 364, 388, 580, 593, 679, 1028
FalI	AAGNNNNNCTT	2 cut(s)	1095, 1127
FaqI	GGGAC	3 cut(s)	86, 116, 177
FatI	CATG	8 cut(s)	53, 97, 360, 384, 576, 589, 675, 1024
FauI	CCCGC	1 cut(s)	403
FbaI	TGATCA	1 cut(s)	363
FokI	GGATG	1 cut(s)	1054
FriOI	GRGCYC	1 cut(s)	962
FspBI	CTAG	2 cut(s)	966, 1002
GlaI	GCGC	4 cut(s)	323, 530, 1006, 1069
GsuI	CTGGAG	4 cut(s)	438, 485, 542, 1256
HaeIII	GGCC	4 cut(s)	434, 721, 909, 954
HapII	CCGG	2 cut(s)	474, 707
HhaI	GCGC	4 cut(s)	324, 531, 1007, 1070
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	8 cut(s)	57, 101, 364, 388, 580, 593, 679, 1028
Hin6I	GCGC	4 cut(s)	322, 529, 1005, 1068
HinP1I	GCGC	4 cut(s)	322, 529, 1005, 1068
HindIII	AAGCTT	2 cut(s)	648, 1268
HinfI	GANTC	2 cut(s)	117, 203
HpaII	CCGG	2 cut(s)	474, 707
HphI	GGTGA	1 cut(s)	841
Hpy188I	TCNGA	1 cut(s)	1192
Hpy188III	TCNNGA	5 cut(s)	314, 474, 559, 590, 1235
HpyAV	CCTTC	4 cut(s)	516, 607, 622, 1156
HpyCH4III	ACNGT	1 cut(s)	130
HpyF3I	CTNAG	7 cut(s)	255, 271, 373, 519, 904, 961, 1199
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	8 cut(s)	57, 101, 364, 388, 580, 593, 679, 1028
HspAI	GCGC	4 cut(s)	322, 529, 1005, 1068
Kpn2I	TCCGGA	1 cut(s)	473
KroI	GCCGGC	1 cut(s)	706
KroNI	GCCGGC	1 cut(s)	708
Ksp22I	TGATCA	1 cut(s)	363
Kzo9I	GATC	5 cut(s)	74, 363, 561, 882, 1192
LguI	GCTCTTC	1 cut(s)	591
LmnI	GCTCC	5 cut(s)	114, 504, 561, 671, 867
LweI	GCATC	2 cut(s)	288, 1220
MaeI	CTAG	2 cut(s)	966, 1002
MalI	GATC	5 cut(s)	76, 365, 563, 884, 1194
MboI	GATC	5 cut(s)	74, 363, 561, 882, 1192
MfeI	CAATTG	1 cut(s)	170
MflI	RGATCY	1 cut(s)	561
MhlI	GDGCHC	1 cut(s)	962
MluCI	AATT	8 cut(s)	170, 393, 698, 816, 1035, 1085, 1098, 1256
MlyI	GAGTC	1 cut(s)	126
MnlI	CCTC	9 cut(s)	154, 168, 457, 481, 514, 796, 804, 1084, 1231
MroI	TCCGGA	1 cut(s)	473
MroNI	GCCGGC	1 cut(s)	706
MroXI	GAANNNNTTC	1 cut(s)	1186
MseI	TTAA	2 cut(s)	777, 1011
MslI	CAYNNNNRTG	1 cut(s)	359
MspA1I	CMGCKG	2 cut(s)	245, 410
MspI	CCGG	2 cut(s)	474, 707
MspR9I	CCNGG	1 cut(s)	956
MunI	CAATTG	1 cut(s)	170
Mva1269I	GAATGC	1 cut(s)	483
MvaI	CCWGG	1 cut(s)	956
MvnI	CGCG	2 cut(s)	315, 324
NaeI	GCCGGC	1 cut(s)	708
NdeII	GATC	5 cut(s)	74, 363, 561, 882, 1192
NgoMIV	GCCGGC	1 cut(s)	706
NheI	GCTAGC	1 cut(s)	1001
NlaIII	CATG	8 cut(s)	57, 101, 364, 388, 580, 593, 679, 1028
NlaIV	GGNNCC	2 cut(s)	180, 673
NruI	TCGCGA	1 cut(s)	315
PagI	TCATGA	1 cut(s)	589
PciSI	GCTCTTC	1 cut(s)	591
PctI	GAATGC	1 cut(s)	483
PdiI	GCCGGC	1 cut(s)	708
PdmI	GAANNNNTTC	1 cut(s)	1186
PfeI	GAWTC	1 cut(s)	203
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
PshBI	ATTAAT	1 cut(s)	777
Psp6I	CCWGG	1 cut(s)	954
PspGI	CCWGG	1 cut(s)	954
PspN4I	GGNNCC	2 cut(s)	180, 673
PspPI	GGNCC	2 cut(s)	908, 952
PstI	CTGCAG	4 cut(s)	409, 469, 931, 991
PstNI	CAGNNNCTG	2 cut(s)	404, 986
PsuI	RGATCY	1 cut(s)	561
PvuII	CAGCTG	1 cut(s)	245
RruI	TCGCGA	1 cut(s)	315
RseI	CAYNNNNRTG	1 cut(s)	359
SapI	GCTCTTC	1 cut(s)	591
SaqAI	TTAA	2 cut(s)	777, 1011
Sau3AI	GATC	5 cut(s)	74, 363, 561, 882, 1192
Sau96I	GGNCC	2 cut(s)	908, 952
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	1 cut(s)	956
SduI	GDGCHC	1 cut(s)	962
SfaNI	GCATC	2 cut(s)	288, 1220
SfcI	CTRYAG	5 cut(s)	240, 405, 465, 927, 987
SmiMI	CAYNNNNRTG	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	8 cut(s)	170, 393, 698, 816, 1035, 1085, 1098, 1256
SsiI	CCGC	2 cut(s)	121, 410
SspI	AATATT	1 cut(s)	730
SspMI	CTAG	2 cut(s)	966, 1002
StyD4I	CCNGG	1 cut(s)	954
TaaI	ACNGT	1 cut(s)	130
TasI	AATT	8 cut(s)	170, 393, 698, 816, 1035, 1085, 1098, 1256
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	2 cut(s)	777, 1011
Tru9I	TTAA	2 cut(s)	777, 1011
TscAI	CASTG	2 cut(s)	409, 987
TspDTI	ATGAA	8 cut(s)	42, 195, 506, 578, 606, 1175, 1215, 1269
TspGWI	ACGGA	2 cut(s)	415, 1237
TspRI	CASTG	2 cut(s)	409, 987
VspI	ATTAAT	1 cut(s)	777
XapI	RAATTY	2 cut(s)	698, 1256
XcmI	CCANNNNNNNNNTGG	2 cut(s)	763, 979
XmnI	GAANNNNTTC	1 cut(s)	1186
XspI	CTAG	2 cut(s)	966, 1002

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.