RLG00000031049

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0009170
Physical Location & Seq
Forward (+)
1586943 .. 1588703
1761 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031049

Sequence Viewer

Length: 1374 bp
ATGGCTTGTTTGCAAACTTCAAGTCTCTTATTCCCTAGATCTTCAACTCTTTCTTGTTCCTCAAGGAGAATGATCAATGCTGCAATCCAAGTCCCCAAAGTTCCAAGACTCCGCTTCGCCAACCCGAAAACCTCAACCAAGTTGGTACTTGAAGGGCTACAATTGAGTGATGGGATCTCAAACACGTACCAAATAGCTCAACCAAAGCATCAAGAATCATCAAAGCACATTCATTCTACTACTACTAGTACTTCTACAGCTACCATTCAGCTCTATGCAATCCTAGAGGAAGTAGCAGATAGAATTGAGATGCACATCAATATCGGCGAGCAGCGCAACAACTGGAACGTACTTCTGCTCAACTCCATCAACATGATCACTCTCACAGCCTCAATCATGGCTGGAATTGCAGGCACTGTTGGTGCTGGAATGCCCATTTTGGCCTTGAAGTTGTCTTCCGCTCTTTTATTTACTGCAGCCTCAGGAATGTTGCTCATCATGAACAAGATCCAACCTTCACAACTAGCTGAAGAACAGCGCAATGCCACAAGATTGTTCAAGCAGATCCAAACTCAAATCCAAACCTTACTAGCACTTCGTGAGCCGACAGAACAAGATGTGAAGGAAACAATGGAGAAAGTTTTAGCTCTTGACAAAGCCTACCCACTTCCATTGCTTGGAGCTATGCTTGAAAAGTACCCTAAAAAGTTTGAGGCAGCTGCTTGGTGGCCTAAAAGTCATGGAGTTCAAAATCCAAGAGAAACGAAATCCAGGATGGGAAAGACGTCTAATGGGTGGAGTGAAGATCTTGAAGATGAAATGAGAGAAATTATTTCAGTGGTGAAAAGCAAAGACTTTGAAGACTACGAGAGATTAGGTAACTTGGCACTGAAGATCAACAAGGTTTTGGCTATTTCAGGTCCTTTGCTTACTGGTGTTGCAGCTATTGGGTCTGCTTTTGTGGGTAACAATGATGTTGCAGCCATTGCTGCAGTGGCTGCTGGTTCATTGAGCACTGCAGTCAATGCTTTTCAACATGGTGGTCAAGTTGGGATGGTGTTTGAGATGTATAGGAATTGTGCTGGCTTCTTCAACAAATTGGAGGATACAATTGAAGCCACACTTGGAGAGCAAGATTTGGAGAAAAGAGAAAATGGTGAATTATTTGAGATGAAGATTGCTTTGGAATTGGGAAGAAGCTTGCCTCAGCTTAGAGAACTTGCATCAAAATCAGCTTCATGTGGGAGAAATGGAACAGTTATTGACGAAATGGAAAAATGGTCTGCGTTGGATGGCCTAGATCAACTAGCAAGGTTGACTTTTGATATCGAGTCTAATATTGAAGGCTTGGACTCGGCCCTTCCGGAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chloroplast_duf

Protein Analysis

458

Amino Acids

49.98

Weight (kDa)

5.72

Isoelectric Point (pI)

44.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroplast_duf PF14476 90 - 405 1.3e-155 Petal formation-expressed
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 788
AccB7I CCANNNNNTGG 1 cut(s) 677
AccBSI CCGCTC 1 cut(s) 461
AccIII TCCGGA 1 cut(s) 1363
AciI CCGC 2 cut(s) 112, 459
AclWI GGATC 3 cut(s) 182, 502, 559
AcuI CTGAAG 2 cut(s) 549, 911
AcyI GRCGYC 1 cut(s) 785
AdeI CACNNNGTG 1 cut(s) 599
AfaI GTAC 5 cut(s) 147, 188, 250, 351, 698
AfiI CCNNNNNNNGG 1 cut(s) 677
AflIII ACRYGT 1 cut(s) 183
AhlI ACTAGT 1 cut(s) 245
AjnI CCWGG 1 cut(s) 770
AjuI GAANNNNNNNTTGG 4 cut(s) 1107, 1139, 1166, 1198
Alw21I GWGCWC 1 cut(s) 1016
Alw26I GTCTC 1 cut(s) 29
AlwI GGATC 3 cut(s) 182, 502, 559
AlwNI CAGNNNCTG 2 cut(s) 416, 998
Aor13HI TCCGGA 1 cut(s) 1363
AoxI GGCC 4 cut(s) 441, 728, 1294, 1356
ApeKI GCWGC 9 cut(s) 80, 331, 476, 716, 719, 941, 980, 989, 998
ArsI GACNNNNNNTTYG 2 cut(s) 7, 39
AspLEI GCGC 2 cut(s) 336, 540
AspS9I GGNCC 2 cut(s) 920, 1357
AsuHPI GGTGA 2 cut(s) 853, 1169
AvaII GGWCC 1 cut(s) 920
AxyI CCTNAGG 1 cut(s) 481
BbsI GAAGAC 2 cut(s) 447, 867
Bbv12I GWGCWC 1 cut(s) 1016
BbvCI CCTCAGC 1 cut(s) 1206
BbvI GCAGC 9 cut(s) 67, 343, 488, 706, 728, 953, 976, 985, 992
BccI CCATC 5 cut(s) 164, 374, 769, 1048, 1286
BciT130I CCWGG 1 cut(s) 772
BciVI GTATCC 1 cut(s) 1099
BclI TGATCA 2 cut(s) 72, 375
BcoDI GTCTC 1 cut(s) 29
BcuI ACTAGT 1 cut(s) 245
BfaI CTAG 7 cut(s) 36, 246, 284, 524, 590, 1298, 1307
BfmI CTRYAG 4 cut(s) 255, 474, 990, 1017
BfuI GTATCC 1 cut(s) 1099
BglII AGATCT 2 cut(s) 38, 805
BisI GCNGC 9 cut(s) 81, 332, 477, 717, 720, 942, 981, 990, 999
BlsI GCNGC 9 cut(s) 82, 333, 478, 718, 721, 943, 982, 991, 1000
BmcAI AGTACT 1 cut(s) 250
Bme1390I CCNGG 1 cut(s) 772
Bme18I GGWCC 1 cut(s) 920
BmgT120I GGNCC 2 cut(s) 920, 1357
BmrFI CCNGG 1 cut(s) 772
BmsI GCATC 3 cut(s) 217, 300, 1232
BpiI GAAGAC 2 cut(s) 447, 867
Bpu10I CCTNAGC 1 cut(s) 1206
BpuEI CTTGAG 1 cut(s) 46
BsaAI YACGTR 1 cut(s) 186
BsaBI GATNNNNATC 1 cut(s) 314
BsaHI GRCGYC 1 cut(s) 785
BsaWI WCCGGW 1 cut(s) 1363
Bsc4I CCNNNNNNNGG 1 cut(s) 677
Bse1I ACTGG 2 cut(s) 347, 937
Bse21I CCTNAGG 1 cut(s) 481
Bse3DI GCAATG 3 cut(s) 547, 671, 984
Bse8I GATNNNNATC 1 cut(s) 314
BseAI TCCGGA 1 cut(s) 1363
BseBI CCWGG 1 cut(s) 772
BseGI GGATG 3 cut(s) 780, 1059, 1297
BseJI GATNNNNATC 1 cut(s) 314
BseLI CCNNNNNNNGG 1 cut(s) 677
BseMI GCAATG 3 cut(s) 547, 671, 984
BseMII CTCAG 2 cut(s) 495, 1220
BseNI ACTGG 2 cut(s) 347, 937
BseXI GCAGC 9 cut(s) 67, 343, 488, 706, 728, 953, 976, 985, 992
BshFI GGCC 4 cut(s) 443, 730, 1296, 1358
BsiHKAI GWGCWC 1 cut(s) 1016
BsiSI CCGG 1 cut(s) 1364
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 677
BsmAI GTCTC 1 cut(s) 29
BsmFI GGGAC 1 cut(s) 77
BsmI GAATGC 1 cut(s) 435
BsnI GGCC 4 cut(s) 443, 730, 1296, 1358
Bsp1286I GDGCHC 1 cut(s) 1016
Bsp13I TCCGGA 1 cut(s) 1363
Bsp143I GATC 9 cut(s) 38, 72, 174, 375, 507, 564, 805, 894, 1300
BspACI CCGC 2 cut(s) 112, 459
BspANI GGCC 4 cut(s) 443, 730, 1296, 1358
BspCNI CTCAG 2 cut(s) 494, 1219
BspEI TCCGGA 1 cut(s) 1363
BspHI TCATGA 1 cut(s) 498
BspMAI CTGCAG 3 cut(s) 478, 994, 1021
BspPI GGATC 3 cut(s) 182, 502, 559
BsrBI CCGCTC 1 cut(s) 461
BsrDI GCAATG 3 cut(s) 547, 671, 984
BsrI ACTGG 2 cut(s) 347, 937
BssMI GATC 9 cut(s) 38, 72, 174, 375, 507, 564, 805, 894, 1300
BssNI GRCGYC 1 cut(s) 785
Bst2UI CCWGG 1 cut(s) 772
Bst4CI ACNGT 2 cut(s) 418, 1258
BstACI GRCGYC 1 cut(s) 785
BstAPI GCANNNNNTGC 3 cut(s) 986, 998, 1025
BstBAI YACGTR 1 cut(s) 186
BstC8I GCNNGC 4 cut(s) 329, 412, 1084, 1202
BstDEI CTNAG 3 cut(s) 481, 1206, 1211
BstF5I GGATG 3 cut(s) 780, 1059, 1297
BstHHI GCGC 2 cut(s) 336, 540
BstKTI GATC 9 cut(s) 41, 75, 177, 378, 510, 567, 808, 897, 1303
BstMAI GTCTC 1 cut(s) 29
BstMBI GATC 9 cut(s) 38, 72, 174, 375, 507, 564, 805, 894, 1300
BstMWI GCNNNNNNNGC 7 cut(s) 333, 407, 986, 989, 995, 998, 1025
BstNI CCWGG 1 cut(s) 772
BstSCI CCNGG 1 cut(s) 770
BstSFI CTRYAG 4 cut(s) 255, 474, 990, 1017
BstV1I GCAGC 9 cut(s) 67, 343, 488, 706, 728, 953, 976, 985, 992
BstV2I GAAGAC 2 cut(s) 447, 867
BstX2I RGATCY 5 cut(s) 38, 174, 507, 564, 805
BstYI RGATCY 5 cut(s) 38, 174, 507, 564, 805
Bsu36I CCTNAGG 1 cut(s) 481
BsuI GTATCC 1 cut(s) 1099
BsuRI GGCC 4 cut(s) 443, 730, 1296, 1358
BtsCI GGATG 3 cut(s) 780, 1059, 1297
BtsI GCAGTG 2 cut(s) 999, 1014
BtsIMutI CAGTG 5 cut(s) 414, 843, 887, 999, 1014
Cac8I GCNNGC 4 cut(s) 329, 412, 1084, 1202
CaiI CAGNNNCTG 2 cut(s) 416, 998
CciI TCATGA 1 cut(s) 498
CfoI GCGC 2 cut(s) 336, 540
Cfr13I GGNCC 2 cut(s) 920, 1357
Csp6I GTAC 5 cut(s) 146, 187, 249, 350, 697
CspCI CAANNNNNGTGG 2 cut(s) 654, 689
CviAII CATG 6 cut(s) 373, 397, 499, 740, 1037, 1239
CviQI GTAC 5 cut(s) 146, 187, 249, 350, 697
DdeI CTNAG 3 cut(s) 481, 1206, 1211
DpnI GATC 9 cut(s) 40, 74, 176, 377, 509, 566, 807, 896, 1302
DpnII GATC 9 cut(s) 38, 72, 174, 375, 507, 564, 805, 894, 1300
DraIII CACNNNGTG 1 cut(s) 599
Eco32I GATATC 1 cut(s) 1327
Eco47I GGWCC 1 cut(s) 920
Eco57I CTGAAG 2 cut(s) 549, 911
Eco81I CCTNAGG 1 cut(s) 481
EcoO109I RGGNCCY 1 cut(s) 920
EcoRII CCWGG 1 cut(s) 770
EcoRV GATATC 1 cut(s) 1327
FaeI CATG 6 cut(s) 376, 400, 502, 743, 1040, 1242
FaiI YATR 9 cut(s) 276, 374, 398, 500, 686, 741, 1038, 1071, 1240
FalI AAGNNNNNCTT 4 cut(s) 1107, 1139, 1303, 1335
FaqI GGGAC 1 cut(s) 77
FatI CATG 6 cut(s) 372, 396, 498, 739, 1036, 1238
FbaI TGATCA 2 cut(s) 72, 375
Fnu4HI GCNGC 9 cut(s) 81, 332, 477, 717, 720, 942, 981, 990, 999
FokI GGATG 3 cut(s) 787, 1066, 1304
Fsp4HI GCNGC 9 cut(s) 81, 332, 477, 717, 720, 942, 981, 990, 999
FspBI CTAG 7 cut(s) 36, 246, 284, 524, 590, 1298, 1307
GlaI GCGC 2 cut(s) 335, 539
GluI GCNGC 9 cut(s) 81, 332, 477, 717, 720, 942, 981, 990, 999
HaeIII GGCC 4 cut(s) 443, 730, 1296, 1358
HapII CCGG 1 cut(s) 1364
HhaI GCGC 2 cut(s) 336, 540
Hin1I GRCGYC 1 cut(s) 785
Hin1II CATG 6 cut(s) 376, 400, 502, 743, 1040, 1242
Hin6I GCGC 2 cut(s) 334, 538
HinP1I GCGC 2 cut(s) 334, 538
HincII GTYRAC 1 cut(s) 1317
HindII GTYRAC 1 cut(s) 1317
HindIII AAGCTT 1 cut(s) 1198
HinfI GANTC 4 cut(s) 108, 215, 1331, 1352
HpaII CCGG 1 cut(s) 1364
HphI GGTGA 2 cut(s) 853, 1169
Hpy166II GTNNAC 1 cut(s) 1317
Hpy188III TCNNGA 7 cut(s) 212, 483, 499, 599, 650, 809, 1364
Hpy8I GTNNAC 1 cut(s) 1317
HpyAV CCTTC 5 cut(s) 146, 525, 616, 1337, 1370
HpyCH4III ACNGT 2 cut(s) 418, 1258
HpyCH4IV ACGT 3 cut(s) 185, 348, 785
HpyF10VI GCNNNNNNNGC 7 cut(s) 333, 407, 986, 989, 995, 998, 1025
HpyF3I CTNAG 3 cut(s) 481, 1206, 1211
HpySE526I ACGT 3 cut(s) 185, 348, 785
Hsp92I GRCGYC 1 cut(s) 785
Hsp92II CATG 6 cut(s) 376, 400, 502, 743, 1040, 1242
HspAI GCGC 2 cut(s) 334, 538
Kpn2I TCCGGA 1 cut(s) 1363
Ksp22I TGATCA 2 cut(s) 72, 375
Kzo9I GATC 9 cut(s) 38, 72, 174, 375, 507, 564, 805, 894, 1300
LmnI GCTCC 1 cut(s) 680
Lsp1109I GCAGC 9 cut(s) 67, 343, 488, 706, 728, 953, 976, 985, 992
LweI GCATC 3 cut(s) 217, 300, 1232
MaeI CTAG 7 cut(s) 36, 246, 284, 524, 590, 1298, 1307
MaeII ACGT 3 cut(s) 185, 348, 785
MaeIII GTNAC 2 cut(s) 878, 965
MalI GATC 9 cut(s) 40, 74, 176, 377, 509, 566, 807, 896, 1302
MbiI CCGCTC 1 cut(s) 461
MboI GATC 9 cut(s) 38, 72, 174, 375, 507, 564, 805, 894, 1300
MfeI CAATTG 2 cut(s) 161, 1110
MflI RGATCY 5 cut(s) 38, 174, 507, 564, 805
MhlI GDGCHC 1 cut(s) 1016
MluCI AATT 9 cut(s) 161, 303, 405, 828, 1075, 1097, 1110, 1160, 1187
MlyI GAGTC 3 cut(s) 102, 1340, 1346
MmeI TCCRAC 2 cut(s) 535, 1269
MnlI CCTC 8 cut(s) 70, 142, 280, 400, 490, 706, 1096, 1215
MroI TCCGGA 1 cut(s) 1363
MslI CAYNNNNRTG 1 cut(s) 371
MspA1I CMGCKG 1 cut(s) 719
MspI CCGG 1 cut(s) 1364
MspR9I CCNGG 1 cut(s) 772
MunI CAATTG 2 cut(s) 161, 1110
Mva1269I GAATGC 1 cut(s) 435
MvaI CCWGG 1 cut(s) 772
MwoI GCNNNNNNNGC 7 cut(s) 333, 407, 986, 989, 995, 998, 1025
NdeII GATC 9 cut(s) 38, 72, 174, 375, 507, 564, 805, 894, 1300
NlaIII CATG 6 cut(s) 376, 400, 502, 743, 1040, 1242
NmeAIII GCCGAG 1 cut(s) 1334
PagI TCATGA 1 cut(s) 498
PctI GAATGC 1 cut(s) 435
PfeI GAWTC 1 cut(s) 215
PflMI CCANNNNNTGG 1 cut(s) 677
PfoI TCCNGGA 1 cut(s) 770
PkrI GCNGC 9 cut(s) 82, 333, 478, 718, 721, 943, 982, 991, 1000
PleI GAGTC 3 cut(s) 102, 1339, 1346
PpsI GAGTC 3 cut(s) 102, 1339, 1346
Ppu21I YACGTR 1 cut(s) 186
PpuMI RGGWCCY 1 cut(s) 920
Psp5II RGGWCCY 1 cut(s) 920
Psp6I CCWGG 1 cut(s) 770
PspGI CCWGG 1 cut(s) 770
PspPI GGNCC 2 cut(s) 920, 1357
PspPPI RGGWCCY 1 cut(s) 920
PstI CTGCAG 3 cut(s) 478, 994, 1021
PstNI CAGNNNCTG 2 cut(s) 416, 998
PsuI RGATCY 5 cut(s) 38, 174, 507, 564, 805
PvuII CAGCTG 1 cut(s) 719
RsaI GTAC 5 cut(s) 147, 188, 250, 351, 698
RsaNI GTAC 5 cut(s) 146, 187, 249, 350, 697
RseI CAYNNNNRTG 1 cut(s) 371
SatI GCNGC 9 cut(s) 81, 332, 477, 717, 720, 942, 981, 990, 999
Sau3AI GATC 9 cut(s) 38, 72, 174, 375, 507, 564, 805, 894, 1300
Sau96I GGNCC 2 cut(s) 920, 1357
ScaI AGTACT 1 cut(s) 250
SchI GAGTC 3 cut(s) 102, 1340, 1346
ScrFI CCNGG 1 cut(s) 772
SduI GDGCHC 1 cut(s) 1016
SfaNI GCATC 3 cut(s) 217, 300, 1232
SfcI CTRYAG 4 cut(s) 255, 474, 990, 1017
SinI GGWCC 1 cut(s) 920
SmiMI CAYNNNNRTG 1 cut(s) 371
SmlI CTYRAG 1 cut(s) 61
SmoI CTYRAG 1 cut(s) 61
SpeI ACTAGT 1 cut(s) 245
Sse9I AATT 9 cut(s) 161, 303, 405, 828, 1075, 1097, 1110, 1160, 1187
SsiI CCGC 2 cut(s) 112, 459
SspI AATATT 1 cut(s) 1339
SspMI CTAG 7 cut(s) 36, 246, 284, 524, 590, 1298, 1307
StyD4I CCNGG 1 cut(s) 770
TaaI ACNGT 2 cut(s) 418, 1258
TaiI ACGT 3 cut(s) 188, 351, 788
TaqI TCGA 1 cut(s) 1329
TasI AATT 9 cut(s) 161, 303, 405, 828, 1075, 1097, 1110, 1160, 1187
TatI WGTACW 1 cut(s) 248
TfiI GAWTC 1 cut(s) 215
TscAI CASTG 5 cut(s) 421, 843, 894, 999, 1021
TseI GCWGC 9 cut(s) 80, 331, 476, 716, 719, 941, 980, 989, 998
TspDTI ATGAA 6 cut(s) 221, 515, 831, 996, 1187, 1227
TspRI CASTG 5 cut(s) 421, 843, 894, 999, 1021
Van91I CCANNNNNTGG 1 cut(s) 677
VpaK11BI GGWCC 1 cut(s) 920
XcmI CCANNNNNNNNNTGG 1 cut(s) 991
XspI CTAG 7 cut(s) 36, 246, 284, 524, 590, 1298, 1307
ZraI GACGTC 1 cut(s) 786
ZrmI AGTACT 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.