Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008848

Physical Location & Seq

Genomic Coordinates Forward (+)

2724906 .. 2728119

Gene Structure 3214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G056800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1695 bp

ATGTCAAGACCAGCTTTGCTTACCATTTTACTGATCCTCCAATTAGTCCATTTTGGAAGCAGCCGGTTTGTTAGAGATTCTGATCTTATATCCGATGGCGGCATAATAGACAACAAAATAACCCAACCTTCAATCCTAGAAGTAGTGGATCTTCAAGCAGATACTGTGACTTGTGAACCAATTTATGGCTTCTTGCCCTGTGCAACTTCAGTGTGGGGGCTGCTTTTCCTGATAATTGTGTACGAGGTCTTGCTGTCCCTTGCAGATCAGTATGTTTCAGCAGGGTCTGATCTCTTCTTTGAATTGTTTGGGACTGGTATCTTTGGTGCTAGTGCTTTCCACATGCTTGGCATGATACCACAAGTAGGATTGGTACTTGTAACTGGAGTGACAGGAAGTACAGAAACTGCAGAGGCAATGGCAGAAATGAGCATGGGCCTACTTGCAGGATCAGCAATCATGCTTCTGACACTAGTTTGGGGTTCTGTTGTTGCTTTTGGAAGCCATGACCTCTCGGTGTCTCAAACTTCATCAAATACAGAAAATAAGAAATCCTTCAGTTTAACTGGTTATGGTGTAACAACTGATGTTGAAACCAAAGCTACTGCAAGAATCATGATGTTCTCATTGATCCCCTTTCTTGTTCTTCAAGTGGCAAAAATGCTCAGTTCTTCTTCGGGGATTCGAGTTGTGATATTAGTCTCTCTACTTATTGCATTTGCATTCCTTGTCATTTACTGCATCTATCAGATCATGCAACCATGGATTCAGAAAAGAAGACTTGATTTTGTGATGCGTAAATATGTACAAAAAAACTTACTACAAAGTCTTCTGACAGTTGGAGGCAACCCCAATGTATCCATTATACAAGGGCTGTTTCATAAATTAGACCAGAATAATAACACATACATATCATCACATGAGCTGAGAGCATTGATCCTTGGAATACAAATAGAAGAAGTAGGTCTGGATGATGATGATTATGCAGCAAAAGTGATGGAGGAATTTGATATCCCTGGTGATTCTCAAATAGTTGAGACAGAGTTTGTCAATGGAATCTCAAAATGGATTAATCCAGCTAAGCCCTCTGCCAACGGTAGCAGTCATGAACACAAATGGTTTTTTAGAAGAAATCCCAAGGATGAGAAAACTAAGGAAGATCAGAAAAGGCTCGTGGCGAAGAAAAAGAAGGCTAAGGGTGCTGATAAATCTTGGACAAATCTCGTGAAGGCTGCTTATCTATTGATTCTTGGTACTGGCATTACAGTTTTGCTTGCAGTGCCCCTCATGCAAACTATGAAAGAATTCTCTACTGCTGCAAGCATCCCTTCATTCTTAACCTCGTATATTTTGATACCCTGGGCCACAAACTACAGACTAGCACTGAGATCAGTAACTTCTGCCAGAGAGAAGACAGATAATGCCATATCTTTAACACTTTCTGAGATTTACAATGGAGTGTTCATGAACAACATCATGGGTTTGACCATCTTCTTGGCACTTGTTTACATACGAAATTTATCGTGGGAAGTCTCTGCAGAATCTTTAGTTGTCTTGATTATTTGCACAGCCATGGGACTTTCTACCAGCTTCAGCAGAAAATTCCCATTTTGGACAAGTATCATAGCCTACATTCTGTACCCTGTATCACTGCTGCTGGTTTATGTCCTCACTACTTTTTTTGGATGGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_7 Na_Ca_ex

Protein Analysis

565

Amino Acids

62.33

Weight (kDa)

6.42

Isoelectric Point (pI)

30.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008848)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08180 FvH4_3g08181 FvH4_3g08181
malus_domestica	MD05G1305500.v1.1 MD10G1284700.v1.1 MD10G1284800.v1.1 MD10G1284900.v1.1
prunus_persica	Prupe.4G056800_v2.0.a1
pyrus_communis	pycom05g28280 pycom10g23770 pycom10g23790 pycom10g23800 pycom10g23810
rosa_chinensis	RchiOBHm_Chr5g0010001
rosa_laevigata	RLG00000031718
rosa_roxburghii	Rroxscaffold_1G00066160
rosa_rugosa	Rorug04G0448600 Rorug04G0448700
rosa_samantha	Rh5AG079300 Rh5BG074100 Rh5CG086700 Rh5DG074800
rosa_wichuraiana	Rw5G007340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	185
AciI	CCGC	1 cut(s)	99
AclWI	GGATC	5 cut(s)	28, 156, 457, 625, 931
AcsI	RAATTY	4 cut(s)	1004, 1304, 1516, 1601
AcuI	CTGAAG	3 cut(s)	192, 541, 1576
AfaI	GTAC	6 cut(s)	242, 375, 400, 807, 1255, 1640
AfiI	CCNNNNNNNGG	2 cut(s)	185, 365
AgsI	TTSAA	5 cut(s)	132, 155, 302, 593, 650
AhlI	ACTAGT	1 cut(s)	472
AjnI	CCWGG	2 cut(s)	1015, 1358
AluBI	AGCT	5 cut(s)	14, 602, 925, 1079, 1590
AluI	AGCT	5 cut(s)	14, 602, 925, 1079, 1590
Alw26I	GTCTC	4 cut(s)	525, 706, 1031, 1537
AlwI	GGATC	5 cut(s)	28, 156, 457, 625, 931
AlwNI	CAGNNNCTG	3 cut(s)	164, 287, 407
AoxI	GGCC	2 cut(s)	436, 1362
ApeKI	GCWGC	6 cut(s)	60, 220, 986, 1232, 1316, 1654
ApoI	RAATTY	4 cut(s)	1004, 1304, 1516, 1601
AseI	ATTAAT	1 cut(s)	1071
Asp700I	GAANNNNTTC	2 cut(s)	554, 1304
AspS9I	GGNCC	2 cut(s)	436, 1362
AsuHPI	GGTGA	1 cut(s)	1031
BaeGI	GKGCMC	1 cut(s)	1284
BarI	GAAGNNNNNNTAC	2 cut(s)	135, 167
BauI	CACGAG	2 cut(s)	1172, 1223
BbsI	GAAGAC	3 cut(s)	784, 821, 1418
BbvI	GCAGC	6 cut(s)	72, 207, 998, 1219, 1303, 1641
BccI	CCATC	4 cut(s)	89, 991, 1496, 1680
BciT130I	CCWGG	2 cut(s)	1017, 1360
BciVI	GTATCC	1 cut(s)	868
BcoDI	GTCTC	4 cut(s)	525, 706, 1031, 1537
BcuI	ACTAGT	1 cut(s)	472
BfaI	CTAG	4 cut(s)	137, 330, 473, 1379
BfmI	CTRYAG	3 cut(s)	408, 1372, 1536
BfuI	GTATCC	1 cut(s)	868
BisI	GCNGC	7 cut(s)	61, 100, 221, 987, 1233, 1317, 1655
BlpI	GCTNAGC	1 cut(s)	1080
BlsI	GCNGC	7 cut(s)	62, 101, 222, 988, 1234, 1318, 1656
Bme1390I	CCNGG	2 cut(s)	1017, 1360
BmgT120I	GGNCC	2 cut(s)	436, 1362
BmrFI	CCNGG	2 cut(s)	1017, 1360
BmsI	GCATC	3 cut(s)	750, 783, 1332
BpiI	GAAGAC	3 cut(s)	784, 821, 1418
BpmI	CTGGAG	1 cut(s)	405
Bpu10I	CCTNAGC	1 cut(s)	1194
Bpu1102I	GCTNAGC	1 cut(s)	1080
BsaBI	GATNNNNATC	1 cut(s)	81
BsaJI	CCNNGG	7 cut(s)	761, 940, 1015, 1137, 1358, 1359, 1572
BsaXI	ACNNNNNCTCC	2 cut(s)	21, 51
Bsc4I	CCNNNNNNNGG	2 cut(s)	185, 365
Bse118I	RCCGGY	1 cut(s)	63
Bse1I	ACTGG	4 cut(s)	319, 388, 571, 1261
Bse3DI	GCAATG	1 cut(s)	423
Bse8I	GATNNNNATC	1 cut(s)	81
BseBI	CCWGG	2 cut(s)	1017, 1360
BseDI	CCNNGG	7 cut(s)	761, 940, 1015, 1137, 1358, 1359, 1572
BseGI	GGATG	4 cut(s)	976, 1147, 1323, 1691
BseJI	GATNNNNATC	1 cut(s)	81
BseLI	CCNNNNNNNGG	2 cut(s)	185, 365
BseMI	GCAATG	1 cut(s)	423
BseMII	CTCAG	4 cut(s)	679, 917, 1376, 1434
BseNI	ACTGG	4 cut(s)	319, 388, 571, 1261
BseSI	GKGCMC	1 cut(s)	1284
BseXI	GCAGC	6 cut(s)	72, 207, 998, 1219, 1303, 1641
BshFI	GGCC	2 cut(s)	438, 1364
BsiSI	CCGG	1 cut(s)	64
BslFI	GGGAC	3 cut(s)	241, 325, 1590
BslI	CCNNNNNNNGG	2 cut(s)	185, 365
BsmAI	GTCTC	4 cut(s)	525, 706, 1031, 1537
BsmFI	GGGAC	3 cut(s)	241, 325, 1590
BsmI	GAATGC	1 cut(s)	722
BsnI	GGCC	2 cut(s)	438, 1364
Bsp1286I	GDGCHC	1 cut(s)	1284
Bsp1407I	TGTACA	1 cut(s)	805
Bsp1720I	GCTNAGC	1 cut(s)	1080
Bsp19I	CCATGG	2 cut(s)	761, 1572
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	2 cut(s)	438, 1364
BspCNI	CTCAG	4 cut(s)	678, 918, 1377, 1435
BspHI	TCATGA	3 cut(s)	615, 1105, 1464
BspMAI	CTGCAG	2 cut(s)	412, 1540
BspPI	GGATC	5 cut(s)	28, 156, 457, 625, 931
BsrDI	GCAATG	1 cut(s)	423
BsrFI	RCCGGY	1 cut(s)	63
BsrGI	TGTACA	1 cut(s)	805
BsrI	ACTGG	4 cut(s)	319, 388, 571, 1261
BssAI	RCCGGY	1 cut(s)	63
BssECI	CCNNGG	7 cut(s)	761, 940, 1015, 1137, 1358, 1359, 1572
BssSI	CACGAG	2 cut(s)	1172, 1223
BssT1I	CCWWGG	4 cut(s)	761, 940, 1137, 1572
Bst2BI	CACGAG	2 cut(s)	1172, 1223
Bst2UI	CCWGG	2 cut(s)	1017, 1360
Bst4CI	ACNGT	4 cut(s)	166, 838, 1097, 1267
Bst6I	CTCTTC	1 cut(s)	299
BstAUI	TGTACA	1 cut(s)	805
BstC8I	GCNNGC	2 cut(s)	1275, 1321
BstDEI	CTNAG	7 cut(s)	665, 926, 1080, 1152, 1194, 1385, 1443
BstDSI	CCRYGG	2 cut(s)	761, 1572
BstF5I	GGATG	4 cut(s)	976, 1147, 1323, 1691
BstMAI	GTCTC	4 cut(s)	525, 706, 1031, 1537
BstMWI	GCNNNNNNNGC	4 cut(s)	452, 1199, 1279, 1288
BstNI	CCWGG	2 cut(s)	1017, 1360
BstNSI	RCATGY	1 cut(s)	346
BstSCI	CCNGG	2 cut(s)	1015, 1358
BstSFI	CTRYAG	3 cut(s)	408, 1372, 1536
BstSLI	GKGCMC	1 cut(s)	1284
BstV1I	GCAGC	6 cut(s)	72, 207, 998, 1219, 1303, 1641
BstV2I	GAAGAC	3 cut(s)	784, 821, 1418
BstX2I	RGATCY	1 cut(s)	148
BstXI	CCANNNNNNTGG	2 cut(s)	347, 1495
BstYI	RGATCY	1 cut(s)	148
BsuI	GTATCC	1 cut(s)	868
BsuRI	GGCC	2 cut(s)	438, 1364
BtgI	CCRYGG	2 cut(s)	761, 1572
BtsCI	GGATG	4 cut(s)	976, 1147, 1323, 1691
BtsI	GCAGTG	2 cut(s)	1284, 1649
BtsIMutI	CAGTG	4 cut(s)	216, 1284, 1382, 1649
Cac8I	GCNNGC	2 cut(s)	1275, 1321
CaiI	CAGNNNCTG	3 cut(s)	164, 287, 407
CciI	TCATGA	3 cut(s)	615, 1105, 1464
Cfr10I	RCCGGY	1 cut(s)	63
Cfr13I	GGNCC	2 cut(s)	436, 1362
Csp6I	GTAC	6 cut(s)	241, 374, 399, 806, 1254, 1639
CviQI	GTAC	6 cut(s)	241, 374, 399, 806, 1254, 1639
DdeI	CTNAG	7 cut(s)	665, 926, 1080, 1152, 1194, 1385, 1443
Eam1104I	CTCTTC	1 cut(s)	299
EarI	CTCTTC	1 cut(s)	299
Eco130I	CCWWGG	4 cut(s)	761, 940, 1137, 1572
Eco32I	GATATC	1 cut(s)	1012
Eco57I	CTGAAG	3 cut(s)	192, 541, 1576
EcoRI	GAATTC	1 cut(s)	1304
EcoRII	CCWGG	2 cut(s)	1015, 1358
EcoRV	GATATC	1 cut(s)	1012
EcoT14I	CCWWGG	4 cut(s)	761, 940, 1137, 1572
ErhI	CCWWGG	4 cut(s)	761, 940, 1137, 1572
FalI	AAGNNNNNCTT	5 cut(s)	30, 539, 571, 1312, 1344
FaqI	GGGAC	3 cut(s)	241, 325, 1590
Fnu4HI	GCNGC	7 cut(s)	61, 100, 221, 987, 1233, 1317, 1655
FokI	GGATG	3 cut(s)	983, 1154, 1310
Fsp4HI	GCNGC	7 cut(s)	61, 100, 221, 987, 1233, 1317, 1655
FspBI	CTAG	4 cut(s)	137, 330, 473, 1379
GluI	GCNGC	7 cut(s)	61, 100, 221, 987, 1233, 1317, 1655
GsuI	CTGGAG	1 cut(s)	405
HaeIII	GGCC	2 cut(s)	438, 1364
HapII	CCGG	1 cut(s)	64
HinfI	GANTC	8 cut(s)	77, 612, 682, 766, 1022, 1056, 1246, 1541
HpaII	CCGG	1 cut(s)	64
HphI	GGTGA	1 cut(s)	1031
Hpy166II	GTNNAC	3 cut(s)	176, 241, 1507
Hpy188I	TCNGA	9 cut(s)	82, 94, 289, 468, 750, 771, 834, 1164, 1444
Hpy188III	TCNNGA	8 cut(s)	6, 229, 616, 968, 1106, 1225, 1465, 1555
Hpy8I	GTNNAC	3 cut(s)	176, 241, 1507
HpyAV	CCTTC	5 cut(s)	138, 565, 1183, 1222, 1338
HpyCH4III	ACNGT	4 cut(s)	166, 838, 1097, 1267
HpyF10VI	GCNNNNNNNGC	4 cut(s)	452, 1199, 1279, 1288
HpyF3I	CTNAG	7 cut(s)	665, 926, 1080, 1152, 1194, 1385, 1443
Lsp1109I	GCAGC	6 cut(s)	72, 207, 998, 1219, 1303, 1641
LweI	GCATC	3 cut(s)	750, 783, 1332
MaeI	CTAG	4 cut(s)	137, 330, 473, 1379
MaeIII	GTNAC	5 cut(s)	166, 379, 388, 577, 1393
MflI	RGATCY	1 cut(s)	148
MhlI	GDGCHC	1 cut(s)	1284
MluCI	AATT	9 cut(s)	41, 180, 234, 302, 884, 1004, 1304, 1516, 1601
MmeI	TCCRAC	1 cut(s)	820
MroXI	GAANNNNTTC	2 cut(s)	554, 1304
MseI	TTAA	5 cut(s)	563, 1071, 1337, 1433, 1693
MslI	CAYNNNNRTG	1 cut(s)	1571
MspI	CCGG	1 cut(s)	64
MspR9I	CCNGG	2 cut(s)	1017, 1360
Mva1269I	GAATGC	1 cut(s)	722
MvaI	CCWGG	2 cut(s)	1017, 1360
MwoI	GCNNNNNNNGC	4 cut(s)	452, 1199, 1279, 1288
NcoI	CCATGG	2 cut(s)	761, 1572
NmuCI	GTSAC	2 cut(s)	166, 388
NspI	RCATGY	1 cut(s)	346
PagI	TCATGA	3 cut(s)	615, 1105, 1464
PasI	CCCWGGG	1 cut(s)	1359
PctI	GAATGC	1 cut(s)	722
PdmI	GAANNNNTTC	2 cut(s)	554, 1304
PfeI	GAWTC	8 cut(s)	77, 612, 682, 766, 1022, 1056, 1246, 1541
PflMI	CCANNNNNTGG	1 cut(s)	185
PkrI	GCNGC	7 cut(s)	62, 101, 222, 988, 1234, 1318, 1656
PshBI	ATTAAT	1 cut(s)	1071
Psp6I	CCWGG	2 cut(s)	1015, 1358
PspGI	CCWGG	2 cut(s)	1015, 1358
PspPI	GGNCC	2 cut(s)	436, 1362
PstI	CTGCAG	2 cut(s)	412, 1540
PstNI	CAGNNNCTG	3 cut(s)	164, 287, 407
PsuI	RGATCY	1 cut(s)	148
RsaI	GTAC	6 cut(s)	242, 375, 400, 807, 1255, 1640
RsaNI	GTAC	6 cut(s)	241, 374, 399, 806, 1254, 1639
RseI	CAYNNNNRTG	1 cut(s)	1571
SaqAI	TTAA	5 cut(s)	563, 1071, 1337, 1433, 1693
SatI	GCNGC	7 cut(s)	61, 100, 221, 987, 1233, 1317, 1655
Sau96I	GGNCC	2 cut(s)	436, 1362
ScrFI	CCNGG	2 cut(s)	1017, 1360
SduI	GDGCHC	1 cut(s)	1284
SfaNI	GCATC	3 cut(s)	750, 783, 1332
SfcI	CTRYAG	3 cut(s)	408, 1372, 1536
SmiMI	CAYNNNNRTG	1 cut(s)	1571
SpeI	ACTAGT	1 cut(s)	472
Sse9I	AATT	9 cut(s)	41, 180, 234, 302, 884, 1004, 1304, 1516, 1601
SsiI	CCGC	1 cut(s)	99
SspMI	CTAG	4 cut(s)	137, 330, 473, 1379
StyD4I	CCNGG	2 cut(s)	1015, 1358
StyI	CCWWGG	4 cut(s)	761, 940, 1137, 1572
TaaI	ACNGT	4 cut(s)	166, 838, 1097, 1267
TaqI	TCGA	1 cut(s)	685
TasI	AATT	9 cut(s)	41, 180, 234, 302, 884, 1004, 1304, 1516, 1601
TatI	WGTACW	2 cut(s)	398, 805
TauI	GCSGC	1 cut(s)	102
TfiI	GAWTC	8 cut(s)	77, 612, 682, 766, 1022, 1056, 1246, 1541
Tru1I	TTAA	5 cut(s)	563, 1071, 1337, 1433, 1693
Tru9I	TTAA	5 cut(s)	563, 1071, 1337, 1433, 1693
TscAI	CASTG	4 cut(s)	216, 1284, 1389, 1656
TseFI	GTSAC	2 cut(s)	166, 388
TseI	GCWGC	6 cut(s)	60, 220, 986, 1232, 1316, 1654
Tsp45I	GTSAC	2 cut(s)	166, 388
TspDTI	ATGAA	7 cut(s)	519, 869, 1122, 1313, 1320, 1453, 1481
TspRI	CASTG	4 cut(s)	216, 1284, 1389, 1656
Van91I	CCANNNNNTGG	1 cut(s)	185
VspI	ATTAAT	1 cut(s)	1071
XapI	RAATTY	4 cut(s)	1004, 1304, 1516, 1601
XceI	RCATGY	1 cut(s)	346
XmnI	GAANNNNTTC	2 cut(s)	554, 1304
XspI	CTAG	4 cut(s)	137, 330, 473, 1379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.