pycom10g23790

EF-hand, calcium binding motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0008848
Physical Location & Seq
Reverse (-)
25808402 .. 25809383
982 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g23790.1

Sequence Viewer

Length: 609 bp
ATGCGTAAATACATACCGAAGATACTGCCGAGTCTTCTGACAATAGACGGAAATGCTAATGAATCCAGTATAAAAGAGCTGTTCCATAGAATAGACAAGAATCATAACACATACATATCAGCAGATGAACTTAGAGCATTGATCCTAGGAATACAAATAGAAGAAATAGGTCTGGATGATGATGATTATATGGAGTTTGTGAATGGACTCTCAAAATGGATTAATCTATATAAGACCCCTGCCAACGGTAAAGATAACGAACATAGATCGCTTTTCAGAAGAAATCATTCCAAGAAAAACAAGATTTTCATTCGGGTCATTAACCTGCACTTGCAGAATGAGACATCTATGGAAGATCAGCAGATACGGCTGATCTCTAAGAAAAAGAAGACTAGGGGAACTGCAATAACGGTTTTTCTTTCAATGCCCCTCATGGTAAGTCTCCAAGAGTTTTCCACTGCTGCAAGCATCCCTTCTTTCACGACCTCGTATGTTGTGATACCCTTGGCTACAAAATACAGAGTGGCGCCAATGTCTGTATCGTCTGCCAAAGACAAGACGGAGAATGCCATCTCCTTAACACTTTCTGAGGTCTGTTTGTCTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EF-hand_7 Na_Ca_ex

Protein Analysis

203

Amino Acids

22.93

Weight (kDa)

9.23

Isoelectric Point (pI)

41.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 333
AccB1I GGYRCC 1 cut(s) 526
AclWI GGATC 1 cut(s) 136
AcyI GRCGYC 1 cut(s) 527
AfiI CCNNNNNNNGG 1 cut(s) 245
AgsI TTSAA 1 cut(s) 423
AluBI AGCT 1 cut(s) 79
AluI AGCT 1 cut(s) 79
Alw26I GTCTC 2 cut(s) 335, 446
AlwI GGATC 1 cut(s) 136
ApeKI GCWGC 1 cut(s) 461
AseI ATTAAT 1 cut(s) 222
Asp700I GAANNNNTTC 1 cut(s) 286
AspA2I CCTAGG 1 cut(s) 145
AspLEI GCGC 1 cut(s) 529
AvrII CCTAGG 1 cut(s) 145
BanI GGYRCC 1 cut(s) 526
BbsI GAAGAC 2 cut(s) 26, 395
BbvI GCAGC 1 cut(s) 448
BccI CCATC 1 cut(s) 578
BceAI ACGGC 1 cut(s) 383
BcgI CGANNNNNNTGC 2 cut(s) 7, 41
BcoDI GTCTC 2 cut(s) 335, 446
BfaI CTAG 2 cut(s) 146, 393
BfoI RGCGCY 1 cut(s) 530
BfuAI ACCTGC 1 cut(s) 333
BisI GCNGC 1 cut(s) 462
BlnI CCTAGG 1 cut(s) 145
BlsI GCNGC 1 cut(s) 463
BmiI GGNNCC 1 cut(s) 528
BmsI GCATC 1 cut(s) 477
BpiI GAAGAC 2 cut(s) 26, 395
BsaHI GRCGYC 1 cut(s) 527
BsaJI CCNNGG 2 cut(s) 145, 504
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse1I ACTGG 1 cut(s) 66
BseDI CCNNGG 2 cut(s) 145, 504
BseGI GGATG 2 cut(s) 181, 468
BseLI CCNNNNNNNGG 1 cut(s) 245
BseMII CTCAG 1 cut(s) 579
BseNI ACTGG 1 cut(s) 66
BseXI GCAGC 1 cut(s) 448
BsgI GTGCAG 1 cut(s) 311
BshNI GGYRCC 1 cut(s) 526
BslI CCNNNNNNNGG 1 cut(s) 245
BsmAI GTCTC 2 cut(s) 335, 446
BsmI GAATGC 1 cut(s) 571
Bsp143I GATC 4 cut(s) 141, 266, 355, 372
BspCNI CTCAG 1 cut(s) 580
BspLI GGNNCC 1 cut(s) 528
BspMI ACCTGC 1 cut(s) 333
BspPI GGATC 1 cut(s) 136
BspT107I GGYRCC 1 cut(s) 526
BsrI ACTGG 1 cut(s) 66
BssECI CCNNGG 2 cut(s) 145, 504
BssMI GATC 4 cut(s) 141, 266, 355, 372
BssNI GRCGYC 1 cut(s) 527
BssT1I CCWWGG 2 cut(s) 145, 504
Bst4CI ACNGT 2 cut(s) 248, 412
BstACI GRCGYC 1 cut(s) 527
BstC8I GCNNGC 1 cut(s) 466
BstDEI CTNAG 3 cut(s) 131, 378, 588
BstF5I GGATG 2 cut(s) 181, 468
BstH2I RGCGCY 1 cut(s) 530
BstHHI GCGC 1 cut(s) 529
BstKTI GATC 4 cut(s) 144, 269, 358, 375
BstMAI GTCTC 2 cut(s) 335, 446
BstMBI GATC 4 cut(s) 141, 266, 355, 372
BstMWI GCNNNNNNNGC 1 cut(s) 367
BstV1I GCAGC 1 cut(s) 448
BstV2I GAAGAC 2 cut(s) 26, 395
BtsCI GGATG 2 cut(s) 181, 468
BtsI GCAGTG 1 cut(s) 456
BtsIMutI CAGTG 1 cut(s) 456
BveI ACCTGC 1 cut(s) 333
Cac8I GCNNGC 1 cut(s) 466
CfoI GCGC 1 cut(s) 529
CviAII CATG 1 cut(s) 433
CviJI RGCY 3 cut(s) 79, 370, 509
CviKI_1 RGCY 3 cut(s) 79, 370, 509
DdeI CTNAG 3 cut(s) 131, 378, 588
DinI GGCGCC 1 cut(s) 528
DpnI GATC 4 cut(s) 143, 268, 357, 374
DpnII GATC 4 cut(s) 141, 266, 355, 372
Eco130I CCWWGG 2 cut(s) 145, 504
EcoT14I CCWWGG 2 cut(s) 145, 504
EgeI GGCGCC 1 cut(s) 528
EheI GGCGCC 1 cut(s) 528
ErhI CCWWGG 2 cut(s) 145, 504
FaeI CATG 1 cut(s) 436
FalI AAGNNNNNCTT 2 cut(s) 457, 489
FatI CATG 1 cut(s) 432
Fnu4HI GCNGC 1 cut(s) 462
FokI GGATG 2 cut(s) 188, 455
Fsp4HI GCNGC 1 cut(s) 462
FspBI CTAG 2 cut(s) 146, 393
GlaI GCGC 1 cut(s) 528
GluI GCNGC 1 cut(s) 462
HaeII RGCGCY 1 cut(s) 530
HhaI GCGC 1 cut(s) 529
Hin1I GRCGYC 1 cut(s) 527
Hin1II CATG 1 cut(s) 436
Hin6I GCGC 1 cut(s) 527
HinP1I GCGC 1 cut(s) 527
HinfI GANTC 4 cut(s) 31, 62, 100, 207
Hpy188I TCNGA 3 cut(s) 39, 278, 589
Hpy188III TCNNGA 2 cut(s) 173, 481
HpyAV CCTTC 1 cut(s) 483
HpyCH4III ACNGT 2 cut(s) 248, 412
HpyCH4V TGCA 4 cut(s) 328, 334, 404, 464
HpyF10VI GCNNNNNNNGC 1 cut(s) 367
HpyF3I CTNAG 3 cut(s) 131, 378, 588
Hsp92I GRCGYC 1 cut(s) 527
Hsp92II CATG 1 cut(s) 436
HspAI GCGC 1 cut(s) 527
KasI GGCGCC 1 cut(s) 526
Kzo9I GATC 4 cut(s) 141, 266, 355, 372
LpnPI CCDG 4 cut(s) 79, 158, 252, 338
Lsp1109I GCAGC 1 cut(s) 448
LweI GCATC 1 cut(s) 477
MaeI CTAG 2 cut(s) 146, 393
MalI GATC 4 cut(s) 143, 268, 357, 374
MboI GATC 4 cut(s) 141, 266, 355, 372
MboII GAAGA 6 cut(s) 26, 31, 173, 291, 365, 400
Mly113I GGCGCC 1 cut(s) 527
MlyI GAGTC 2 cut(s) 40, 201
MnlI CCTC 3 cut(s) 440, 496, 583
MroXI GAANNNNTTC 1 cut(s) 286
MseI TTAA 3 cut(s) 222, 321, 578
Mva1269I GAATGC 1 cut(s) 571
MwoI GCNNNNNNNGC 1 cut(s) 367
NarI GGCGCC 1 cut(s) 527
NdeII GATC 4 cut(s) 141, 266, 355, 372
NlaIII CATG 1 cut(s) 436
NlaIV GGNNCC 1 cut(s) 528
NmeAIII GCCGAG 1 cut(s) 54
PctI GAATGC 1 cut(s) 571
PdmI GAANNNNTTC 1 cut(s) 286
PfeI GAWTC 2 cut(s) 62, 100
PkrI GCNGC 1 cut(s) 463
PleI GAGTC 2 cut(s) 39, 201
PluTI GGCGCC 1 cut(s) 530
PpsI GAGTC 2 cut(s) 39, 201
PshBI ATTAAT 1 cut(s) 222
PspN4I GGNNCC 1 cut(s) 528
SaqAI TTAA 3 cut(s) 222, 321, 578
SatI GCNGC 1 cut(s) 462
Sau3AI GATC 4 cut(s) 141, 266, 355, 372
SchI GAGTC 2 cut(s) 40, 201
SetI ASST 5 cut(s) 81, 172, 327, 488, 594
SfaNI GCATC 1 cut(s) 477
SfoI GGCGCC 1 cut(s) 528
SspDI GGCGCC 1 cut(s) 526
SspMI CTAG 2 cut(s) 146, 393
StyI CCWWGG 2 cut(s) 145, 504
TaaI ACNGT 2 cut(s) 248, 412
TfiI GAWTC 2 cut(s) 62, 100
Tru1I TTAA 3 cut(s) 222, 321, 578
Tru9I TTAA 3 cut(s) 222, 321, 578
TscAI CASTG 1 cut(s) 463
TseI GCWGC 1 cut(s) 461
TspDTI ATGAA 3 cut(s) 75, 141, 298
TspGWI ACGGA 2 cut(s) 63, 575
TspRI CASTG 1 cut(s) 463
VspI ATTAAT 1 cut(s) 222
XmaJI CCTAGG 1 cut(s) 145
XmnI GAANNNNTTC 1 cut(s) 286
XspI CTAG 2 cut(s) 146, 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.