Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0008848

Physical Location & Seq

Genomic Coordinates Reverse (-)

25813334 .. 25815473

Gene Structure 2140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g23800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1494 bp

ATGACAGAAATTCACATTTTGTTCCCCAGTTATTGGAGTTACAGCAACTACAGAAACTGCGGAGGAAATGGCAGAAATGAGCATGAGCATGCTTGCAGGATCGATCTGAGCTTCATCATGATTCTTACCATAATTTGGGGTTCTGCTGTTGCTTTCGGTAGCTCCGACCTCTCGGAGTCTCAAACTTCATCAAATCCAGAAAATAAGAAACCCTTCAGTTTAACTGATTCTGGTGTAAGAACTGATATCGAAGCCCGAGATACTGCAAGAATCATGATGCTCTCGTTGATCCCATATCTCATTCTTCAGCTGGCAAAAATCTTGACTTCAACTACAGCGGTTCGAGTTGCGATCTTAATTTCTCTACTGATTGCATCTGCATTCCTTGCCACTTACTTCATTTACCAGGTAACACACTTCAAGAATATAAAATCTGCTCGGCAATACTTAGATGAAATTCGAAATGTTGTATTCGTGAACTTCTTAACTGATAGAAAAAAAATTATGCAGTTCTTTCAACCATGGATTCAACACAGAAGGCTTGAATATTTGATGCGTAAATACATACCAAAAAGCATACTGGCGAGTCTTATGAGAGTAGGCGGAAACCCTAATGTATCCAGTATAAAAGGGCTGTTCCATAGAATAGACAAGAATAATAACGCATACATCTCAGCAGATGAGCTTAAAGCATTGATCCTAGGAATACAAATAAACGAAATAGGTCTGGATGACGATGATTATGTAGCAGAAGTGATGAAGCAATTTGATCCCTCTGGCGACGGTCAAATAGATGAGACGGAGTTTGTGAATGGAATCTCAAAATGGATTAATCTAGCTAAGCCCCCTGCCAACGGTAAAGGTCATGAACATAGATCGCTTTTCAGAAGAAATAATTCCAAGAGTTTCATCCGGGTCATTAAACTGCACTTGCAGAATGAGAAATCTATAGAAGATCAGCTTACGCGATCGATCTCTAAGAAAAAGGAGACTAAGGGTGCTACTACATCGTGGATGAATCTCCTGAAGGCTGCTTTTCTAATTATTCTAGGAACTGCCATGACGGTTTTTCTTTCAACGCCCCTCATGGAAAGTCTCCAAAAGTTTTCCACTGCTGCAAGCATCCCTTCTTTCGCGGTCTCGTATGTTGTGATACCCTTGGCTACAAACTACAGACTGGCGCTAATGTCAGTAACGTCTGCCAAAGAGAAGACGGAGAATGCCATCTCTTTAACACTTTCTGAGATTTACAACGCCACGTTCATGAACAACATTGTGGGGTTGGTCATATTTTTGGCGCTCGTTTATATACGCAATTTATCATGGGACGTGGCTGCTGATGTTTTAGTTGTTTTACTTATTTCGACAGCAGTTGGTCTTTCTACCAGCTTCAGCAGGAAGTTCCCATTTTGGACAAGCATTCTAGCATACATTCTGTACCCTCTATCACTGCTGCTGGTTTATGTTCTTACCACTGTTATCGGATGGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_7 Na_Ca_ex

Protein Analysis

498

Amino Acids

55.99

Weight (kDa)

9.36

Isoelectric Point (pI)

30.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008848)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08180 FvH4_3g08181 FvH4_3g08181
malus_domestica	MD05G1305500.v1.1 MD10G1284700.v1.1 MD10G1284800.v1.1 MD10G1284900.v1.1
prunus_persica	Prupe.4G056800_v2.0.a1
pyrus_communis	pycom05g28280 pycom10g23770 pycom10g23790 pycom10g23800 pycom10g23810
rosa_chinensis	RchiOBHm_Chr5g0010001
rosa_laevigata	RLG00000031718
rosa_roxburghii	Rroxscaffold_1G00066160
rosa_rugosa	Rorug04G0448600 Rorug04G0448700
rosa_samantha	Rh5AG079300 Rh5BG074100 Rh5CG086700 Rh5DG074800
rosa_wichuraiana	Rw5G007340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	33, 135
AccII	CGCG	2 cut(s)	967, 1136
AciI	CCGC	4 cut(s)	60, 338, 603, 1136
AclWI	GGATC	4 cut(s)	107, 283, 691, 764
AcsI	RAATTY	2 cut(s)	9, 456
AcuI	CTGAAG	4 cut(s)	199, 290, 1046, 1375
AfaI	GTAC	1 cut(s)	1439
AfiI	CCNNNNNNNGG	3 cut(s)	33, 135, 854
AgsI	TTSAA	6 cut(s)	330, 421, 518, 530, 545, 1077
AjiI	CACGTC	1 cut(s)	1330
AjnI	CCWGG	1 cut(s)	405
AluBI	AGCT	7 cut(s)	111, 162, 310, 685, 839, 961, 1389
AluI	AGCT	7 cut(s)	111, 162, 310, 685, 839, 961, 1389
Alw26I	GTCTC	5 cut(s)	183, 791, 983, 1100, 1144
AlwI	GGATC	4 cut(s)	107, 283, 691, 764
AlwNI	CAGNNNCTG	1 cut(s)	57
Ama87I	CYCGRG	1 cut(s)	255
ApeKI	GCWGC	4 cut(s)	1031, 1115, 1334, 1453
ApoI	RAATTY	2 cut(s)	9, 456
AseI	ATTAAT	1 cut(s)	831
Asp700I	GAANNNNTTC	2 cut(s)	212, 895
AspA2I	CCTAGG	1 cut(s)	700
AspLEI	GCGC	2 cut(s)	1183, 1300
AsuC2I	CCSGG	1 cut(s)	914
AsuII	TTCGAA	1 cut(s)	460
AvaI	CYCGRG	1 cut(s)	255
AvrII	CCTAGG	1 cut(s)	700
BbsI	GAAGAC	1 cut(s)	1217
BbvI	GCAGC	4 cut(s)	1018, 1102, 1321, 1440
BccI	CCATC	2 cut(s)	1232, 1479
BciT130I	CCWGG	1 cut(s)	407
BciVI	GTATCC	1 cut(s)	628
BcnI	CCSGG	1 cut(s)	914
BcoDI	GTCTC	5 cut(s)	183, 791, 983, 1100, 1144
BfaI	CTAG	4 cut(s)	701, 836, 1049, 1424
BfmI	CTRYAG	4 cut(s)	49, 333, 948, 1171
BfoI	RGCGCY	2 cut(s)	1184, 1301
BfuI	GTATCC	1 cut(s)	628
BisI	GCNGC	4 cut(s)	1032, 1116, 1335, 1454
BlnI	CCTAGG	1 cut(s)	700
BlpI	GCTNAGC	1 cut(s)	840
BlsI	GCNGC	4 cut(s)	1033, 1117, 1336, 1455
Bme1390I	CCNGG	2 cut(s)	407, 914
BmeT110I	CYCGRG	1 cut(s)	255
BmgBI	CACGTC	1 cut(s)	1330
BmrFI	CCNGG	2 cut(s)	407, 914
BmrI	ACTGGG	1 cut(s)	21
BmsI	GCATC	4 cut(s)	267, 383, 543, 1131
BmuI	ACTGGG	1 cut(s)	21
BpiI	GAAGAC	1 cut(s)	1217
Bpu1102I	GCTNAGC	1 cut(s)	840
Bpu14I	TTCGAA	1 cut(s)	460
BpuMI	CCSGG	1 cut(s)	914
Bsa29I	ATCGAT	2 cut(s)	102, 971
BsaI	GGTCTC	1 cut(s)	1144
BsaJI	CCNNGG	3 cut(s)	521, 700, 1158
Bsc4I	CCNNNNNNNGG	3 cut(s)	33, 135, 854
Bse1I	ACTGG	4 cut(s)	27, 585, 621, 1182
BseBI	CCWGG	1 cut(s)	407
BseCI	ATCGAT	2 cut(s)	102, 971
BseDI	CCNNGG	3 cut(s)	521, 700, 1158
BseGI	GGATG	5 cut(s)	736, 909, 1020, 1122, 1490
BseLI	CCNNNNNNNGG	3 cut(s)	33, 135, 854
BseMII	CTCAG	3 cut(s)	98, 687, 1233
BseNI	ACTGG	4 cut(s)	27, 585, 621, 1182
BseXI	GCAGC	4 cut(s)	1018, 1102, 1321, 1440
BsgI	GTGCAG	1 cut(s)	911
Bsh1236I	CGCG	2 cut(s)	967, 1136
Bsh1285I	CGRYCG	1 cut(s)	971
BshVI	ATCGAT	2 cut(s)	102, 971
BsiEI	CGRYCG	1 cut(s)	971
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	913
BslFI	GGGAC	1 cut(s)	1340
BslI	CCNNNNNNNGG	3 cut(s)	33, 135, 854
BsmAI	GTCTC	5 cut(s)	183, 791, 983, 1100, 1144
BsmBI	CGTCTC	1 cut(s)	791
BsmFI	GGGAC	1 cut(s)	1340
BsmI	GAATGC	3 cut(s)	380, 1225, 1419
Bso31I	GGTCTC	1 cut(s)	1144
BsoBI	CYCGRG	1 cut(s)	255
Bsp119I	TTCGAA	1 cut(s)	460
Bsp1720I	GCTNAGC	1 cut(s)	840
Bsp19I	CCATGG	1 cut(s)	521
BspACI	CCGC	4 cut(s)	60, 338, 603, 1136
BspCNI	CTCAG	3 cut(s)	99, 686, 1234
BspDI	ATCGAT	2 cut(s)	102, 971
BspFNI	CGCG	2 cut(s)	967, 1136
BspHI	TCATGA	4 cut(s)	117, 273, 865, 1263
BspPI	GGATC	4 cut(s)	107, 283, 691, 764
BspT104I	TTCGAA	1 cut(s)	460
BspTNI	GGTCTC	1 cut(s)	1144
BsrI	ACTGG	4 cut(s)	27, 585, 621, 1182
BssECI	CCNNGG	3 cut(s)	521, 700, 1158
BssT1I	CCWWGG	3 cut(s)	521, 700, 1158
Bst2UI	CCWGG	1 cut(s)	407
Bst4CI	ACNGT	4 cut(s)	785, 857, 1066, 1477
BstAPI	GCANNNNNTGC	1 cut(s)	386
BstBI	TTCGAA	1 cut(s)	460
BstC8I	GCNNGC	4 cut(s)	90, 94, 312, 1120
BstDEI	CTNAG	7 cut(s)	107, 448, 673, 840, 978, 993, 1242
BstDSI	CCRYGG	1 cut(s)	521
BstF5I	GGATG	5 cut(s)	736, 909, 1020, 1122, 1490
BstFNI	CGCG	2 cut(s)	967, 1136
BstH2I	RGCGCY	2 cut(s)	1184, 1301
BstHHI	GCGC	2 cut(s)	1183, 1300
BstMAI	GTCTC	5 cut(s)	183, 791, 983, 1100, 1144
BstMCI	CGRYCG	1 cut(s)	971
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstNI	CCWGG	1 cut(s)	407
BstNSI	RCATGY	1 cut(s)	92
BstSCI	CCNGG	2 cut(s)	405, 912
BstSFI	CTRYAG	4 cut(s)	49, 333, 948, 1171
BstUI	CGCG	2 cut(s)	967, 1136
BstV1I	GCAGC	4 cut(s)	1018, 1102, 1321, 1440
BstV2I	GAAGAC	1 cut(s)	1217
Bsu15I	ATCGAT	2 cut(s)	102, 971
BsuI	GTATCC	1 cut(s)	628
BsuTUI	ATCGAT	2 cut(s)	102, 971
BtgI	CCRYGG	1 cut(s)	521
BtrI	CACGTC	1 cut(s)	1330
BtsCI	GGATG	5 cut(s)	736, 909, 1020, 1122, 1490
BtsI	GCAGTG	2 cut(s)	1110, 1448
BtsIMutI	CAGTG	3 cut(s)	1110, 1448, 1473
Cac8I	GCNNGC	4 cut(s)	90, 94, 312, 1120
CaiI	CAGNNNCTG	1 cut(s)	57
CciI	TCATGA	4 cut(s)	117, 273, 865, 1263
CfoI	GCGC	2 cut(s)	1183, 1300
ClaI	ATCGAT	2 cut(s)	102, 971
CsiI	ACCWGGT	1 cut(s)	405
Csp6I	GTAC	1 cut(s)	1438
CviQI	GTAC	1 cut(s)	1438
DdeI	CTNAG	7 cut(s)	107, 448, 673, 840, 978, 993, 1242
EciI	GGCGGA	1 cut(s)	618
Eco130I	CCWWGG	3 cut(s)	521, 700, 1158
Eco31I	GGTCTC	1 cut(s)	1144
Eco32I	GATATC	1 cut(s)	247
Eco57I	CTGAAG	4 cut(s)	199, 290, 1046, 1375
Eco88I	CYCGRG	1 cut(s)	255
EcoRII	CCWGG	1 cut(s)	405
EcoRV	GATATC	1 cut(s)	247
EcoT14I	CCWWGG	3 cut(s)	521, 700, 1158
ErhI	CCWWGG	3 cut(s)	521, 700, 1158
Esp3I	CGTCTC	1 cut(s)	791
FalI	AAGNNNNNCTT	6 cut(s)	197, 229, 945, 977, 1111, 1143
FaqI	GGGAC	1 cut(s)	1340
Fnu4HI	GCNGC	4 cut(s)	1032, 1116, 1335, 1454
FokI	GGATG	4 cut(s)	743, 896, 1027, 1109
Fsp4HI	GCNGC	4 cut(s)	1032, 1116, 1335, 1454
FspBI	CTAG	4 cut(s)	701, 836, 1049, 1424
GlaI	GCGC	2 cut(s)	1182, 1299
GluI	GCNGC	4 cut(s)	1032, 1116, 1335, 1454
HaeII	RGCGCY	2 cut(s)	1184, 1301
HapII	CCGG	1 cut(s)	913
HhaI	GCGC	2 cut(s)	1183, 1300
Hin6I	GCGC	2 cut(s)	1181, 1298
HinP1I	GCGC	2 cut(s)	1181, 1298
HinfI	GANTC	8 cut(s)	121, 176, 227, 270, 526, 586, 816, 1018
HpaII	CCGG	1 cut(s)	913
Hpy166II	GTNNAC	1 cut(s)	478
Hpy188I	TCNGA	6 cut(s)	108, 166, 175, 887, 1243, 1484
Hpy8I	GTNNAC	1 cut(s)	478
Hpy99I	CGWCG	1 cut(s)	785
HpyAV	CCTTC	4 cut(s)	223, 531, 1021, 1137
HpyCH4III	ACNGT	4 cut(s)	785, 857, 1066, 1477
HpyCH4IV	ACGT	3 cut(s)	1196, 1259, 1329
HpyCH4V	TGCA	8 cut(s)	96, 266, 374, 380, 508, 928, 934, 1118
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpyF3I	CTNAG	7 cut(s)	107, 448, 673, 840, 978, 993, 1242
HpySE526I	ACGT	3 cut(s)	1196, 1259, 1329
HspAI	GCGC	2 cut(s)	1181, 1298
LmnI	GCTCC	1 cut(s)	167
Lsp1109I	GCAGC	4 cut(s)	1018, 1102, 1321, 1440
LweI	GCATC	4 cut(s)	267, 383, 543, 1131
MabI	ACCWGGT	1 cut(s)	405
MaeI	CTAG	4 cut(s)	701, 836, 1049, 1424
MaeII	ACGT	3 cut(s)	1196, 1259, 1329
MaeIII	GTNAC	3 cut(s)	38, 409, 1192
MboII	GAAGA	4 cut(s)	296, 900, 965, 1222
MluCI	AATT	9 cut(s)	9, 132, 357, 456, 501, 764, 895, 1041, 1315
MlyI	GAGTC	2 cut(s)	185, 595
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	5 cut(s)	56, 179, 784, 1094, 1452
MroXI	GAANNNNTTC	2 cut(s)	212, 895
MseI	TTAA	8 cut(s)	221, 356, 485, 687, 831, 921, 1232, 1492
MslI	CAYNNNNRTG	2 cut(s)	87, 1262
MspA1I	CMGCKG	2 cut(s)	310, 338
MspI	CCGG	1 cut(s)	913
MspR9I	CCNGG	2 cut(s)	407, 914
Mva1269I	GAATGC	3 cut(s)	380, 1225, 1419
MvaI	CCWGG	1 cut(s)	407
MvnI	CGCG	2 cut(s)	967, 1136
MwoI	GCNNNNNNNGC	1 cut(s)	386
NciI	CCSGG	1 cut(s)	914
NcoI	CCATGG	1 cut(s)	521
NmeAIII	GCCGAG	1 cut(s)	418
NspI	RCATGY	1 cut(s)	92
NspV	TTCGAA	1 cut(s)	460
PaeI	GCATGC	1 cut(s)	92
PagI	TCATGA	4 cut(s)	117, 273, 865, 1263
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PctI	GAATGC	3 cut(s)	380, 1225, 1419
PdmI	GAANNNNTTC	2 cut(s)	212, 895
PfeI	GAWTC	6 cut(s)	121, 227, 270, 526, 816, 1018
PflMI	CCANNNNNTGG	2 cut(s)	33, 135
PkrI	GCNGC	4 cut(s)	1033, 1117, 1336, 1455
Ple19I	CGATCG	1 cut(s)	971
PleI	GAGTC	2 cut(s)	184, 594
PpsI	GAGTC	2 cut(s)	184, 594
PshBI	ATTAAT	1 cut(s)	831
Psp6I	CCWGG	1 cut(s)	405
PspGI	CCWGG	1 cut(s)	405
PstNI	CAGNNNCTG	1 cut(s)	57
PvuI	CGATCG	1 cut(s)	971
PvuII	CAGCTG	1 cut(s)	310
RsaI	GTAC	1 cut(s)	1439
RsaNI	GTAC	1 cut(s)	1438
RseI	CAYNNNNRTG	2 cut(s)	87, 1262
SaqAI	TTAA	8 cut(s)	221, 356, 485, 687, 831, 921, 1232, 1492
SatI	GCNGC	4 cut(s)	1032, 1116, 1335, 1454
SchI	GAGTC	2 cut(s)	185, 595
ScrFI	CCNGG	2 cut(s)	407, 914
SexAI	ACCWGGT	1 cut(s)	405
SfaNI	GCATC	4 cut(s)	267, 383, 543, 1131
SfcI	CTRYAG	4 cut(s)	49, 333, 948, 1171
SfuI	TTCGAA	1 cut(s)	460
SmiMI	CAYNNNNRTG	2 cut(s)	87, 1262
SphI	GCATGC	1 cut(s)	92
Sse9I	AATT	9 cut(s)	9, 132, 357, 456, 501, 764, 895, 1041, 1315
SsiI	CCGC	4 cut(s)	60, 338, 603, 1136
SspI	AATATT	1 cut(s)	548
SspMI	CTAG	4 cut(s)	701, 836, 1049, 1424
StyD4I	CCNGG	2 cut(s)	405, 912
StyI	CCWWGG	3 cut(s)	521, 700, 1158
TaaI	ACNGT	4 cut(s)	785, 857, 1066, 1477
TaiI	ACGT	3 cut(s)	1199, 1262, 1332
TaqI	TCGA	6 cut(s)	102, 249, 343, 460, 971, 1364
TasI	AATT	9 cut(s)	9, 132, 357, 456, 501, 764, 895, 1041, 1315
TfiI	GAWTC	6 cut(s)	121, 227, 270, 526, 816, 1018
Tru1I	TTAA	8 cut(s)	221, 356, 485, 687, 831, 921, 1232, 1492
Tru9I	TTAA	8 cut(s)	221, 356, 485, 687, 831, 921, 1232, 1492
TscAI	CASTG	3 cut(s)	1117, 1455, 1480
TseI	GCWGC	4 cut(s)	1031, 1115, 1334, 1453
TspGWI	ACGGA	2 cut(s)	815, 1229
TspRI	CASTG	3 cut(s)	1117, 1455, 1480
Van91I	CCANNNNNTGG	2 cut(s)	33, 135
VspI	ATTAAT	1 cut(s)	831
XapI	RAATTY	2 cut(s)	9, 456
XceI	RCATGY	1 cut(s)	92
XmaJI	CCTAGG	1 cut(s)	700
XmnI	GAANNNNTTC	2 cut(s)	212, 895
XspI	CTAG	4 cut(s)	701, 836, 1049, 1424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.